Wall clock time and date at job start Mon Mar 30 2020 03:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 110.99953 * 2 1 4 4 C 1.46896 * 111.00141 * 123.95308 * 2 1 3 5 5 C 1.53002 * 109.47243 * 66.04370 * 4 2 1 6 6 C 1.50706 * 109.46925 * 180.02562 * 5 4 2 7 7 N 1.30450 * 126.07274 * 90.02970 * 6 5 4 8 8 O 1.21273 * 110.68586 * 179.97438 * 7 6 5 9 9 C 1.34757 * 109.53374 * 0.02562 * 8 7 6 10 10 C 1.40340 * 126.79168 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99645 * 179.97438 * 10 9 8 12 12 C 1.40458 * 120.00464 * 359.97438 * 10 9 8 13 13 N 1.30510 * 119.99849 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00164 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.47164 * 59.99592 * 14 12 10 16 16 H 1.48502 * 109.47236 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47355 * 299.99794 * 14 12 10 18 18 N 1.33330 * 106.40929 * 359.73801 * 9 8 7 19 19 H 1.09004 * 109.47324 * 296.04620 * 1 2 3 20 20 H 1.09000 * 109.47134 * 56.04693 * 1 2 3 21 21 H 1.09002 * 109.47308 * 176.05293 * 1 2 3 22 22 H 1.08997 * 109.47247 * 183.95659 * 3 2 1 23 23 H 1.09002 * 109.46766 * 303.95244 * 3 2 1 24 24 H 1.09002 * 109.47469 * 63.95032 * 3 2 1 25 25 H 1.09004 * 109.47041 * 306.04581 * 4 2 1 26 26 H 1.09004 * 109.47535 * 186.04620 * 4 2 1 27 27 H 1.09000 * 109.46497 * 60.00307 * 5 4 2 28 28 H 1.09000 * 109.47312 * 300.00087 * 5 4 2 29 29 H 0.96995 * 120.00153 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6314 -2.2426 0.9704 6 6 2.1711 -3.0282 2.1378 7 7 1.5461 -3.2667 3.2577 8 8 2.2392 -3.9261 4.0031 9 6 3.4214 -4.1831 3.4095 10 6 4.4907 -4.9153 3.9480 11 1 5.3936 -5.0552 3.3721 12 6 4.3867 -5.4663 5.2358 13 7 3.2959 -5.2968 5.9319 14 14 5.8098 -6.4414 5.9522 15 1 7.0143 -5.5761 6.0283 16 1 5.4516 -6.9114 7.3146 17 1 6.0951 -7.6116 5.0835 18 7 3.3720 -3.6086 2.2073 19 1 -0.3634 0.4513 0.9233 20 1 -0.3633 0.5740 -0.8524 21 1 -0.3634 -1.0252 -0.0707 22 1 3.0827 1.3432 -0.0709 23 1 1.5898 1.9163 -0.8525 24 1 1.7043 1.8724 0.9233 25 1 1.5611 -0.3872 2.0628 26 1 3.0798 -0.6611 1.1756 27 1 2.0658 -2.6213 0.0452 28 1 0.5472 -2.3475 0.9324 29 1 3.2242 -5.6769 6.8214 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234226838.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:20 Heat of formation + Delta-G solvation = 45.882265 kcal Electronic energy + Delta-G solvation = -13643.250719 eV Core-core repulsion = 11182.979871 eV Total energy + Delta-G solvation = -2460.270848 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.99050 -37.49774 -34.09993 -33.96521 -31.34562 -29.34024 -27.49938 -26.47503 -24.67469 -21.60087 -21.26613 -20.19654 -17.59120 -15.85002 -15.45314 -15.37442 -15.23277 -14.75179 -14.42211 -13.61287 -12.98063 -12.53707 -12.30700 -11.78004 -11.69333 -11.58132 -11.49988 -11.42793 -11.29539 -10.65165 -10.44704 -10.02045 -9.90154 -9.45347 -8.87248 -8.28144 -8.21492 -7.07116 -5.00716 2.81829 2.96406 3.00408 3.28989 3.74343 3.85102 4.16250 5.02071 5.17153 5.26032 5.30244 5.44559 5.48558 5.52376 5.67643 5.79253 5.88667 5.89796 6.02751 6.13395 6.44023 6.72047 6.86182 7.13593 7.13654 7.46668 7.91805 8.13185 8.34506 8.48683 9.92258 10.41723 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.076351 B = 0.006229 C = 0.006016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.641497 B = 4494.266259 C = 4653.331302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.548 5.548 3 C 0.026 3.974 4 C 0.065 3.935 5 C -0.009 4.009 6 C 0.159 3.841 7 N -0.473 5.473 8 O 0.045 5.955 9 C 0.301 3.699 10 C -0.417 4.417 11 H 0.112 0.888 12 C 0.070 3.930 13 N -0.765 5.765 14 Si 0.937 3.063 15 H -0.259 1.259 16 H -0.274 1.274 17 H -0.259 1.259 18 N -0.612 5.612 19 H 0.024 0.976 20 H 0.064 0.936 21 H 0.072 0.928 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.023 0.977 25 H 0.035 0.965 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.077 5.696 -4.399 7.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.064 4.064 5 C -0.049 4.049 6 C -0.115 4.115 7 N -0.203 5.203 8 O -0.002 6.002 9 C 0.110 3.890 10 C -0.455 4.455 11 H 0.130 0.870 12 C -0.154 4.154 13 N -0.392 5.392 14 Si 0.759 3.241 15 H -0.184 1.184 16 H -0.199 1.199 17 H -0.183 1.183 18 N -0.356 5.356 19 H 0.043 0.957 20 H 0.083 0.917 21 H 0.091 0.909 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.644 5.793 -4.846 7.729 hybrid contribution 0.359 -0.129 1.308 1.363 sum -1.284 5.663 -3.537 6.800 Atomic orbital electron populations 1.22446 0.87687 1.02561 1.00096 1.61978 1.07892 1.13548 1.43745 1.22355 1.00902 0.88891 1.00104 1.22055 1.00634 0.93005 0.90664 1.19530 0.99751 0.91826 0.93776 1.24857 0.90599 1.00642 0.95438 1.74304 1.21544 1.19361 1.05053 1.85524 1.23152 1.53934 1.37615 1.24244 0.87203 0.92168 0.85366 1.18532 0.98996 1.28198 0.99740 0.86995 1.26198 0.97684 0.95198 0.96354 1.69630 1.25807 1.32840 1.10964 0.85887 0.80096 0.79900 0.78188 1.18371 1.19883 1.18344 1.72240 1.19468 1.24545 1.19351 0.95694 0.91694 0.90922 0.91304 0.91579 0.95849 0.94676 0.90245 0.89526 0.90994 0.89655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.32 60.06 0.56 0.82 15 2 N -0.55 -8.07 5.02 -251.26 -1.26 -9.33 15 3 C 0.03 0.31 9.57 60.06 0.57 0.89 15 4 C 0.07 1.15 4.94 -3.83 -0.02 1.13 15 5 C -0.01 -0.19 5.77 -27.88 -0.16 -0.35 15 6 C 0.16 4.08 7.43 -156.78 -1.17 2.92 15 7 N -0.47 -13.17 12.15 31.51 0.38 -12.78 15 8 O 0.04 1.32 9.74 15.12 0.15 1.47 15 9 C 0.30 8.72 7.82 -16.35 -0.13 8.59 15 10 C -0.42 -11.15 9.48 -37.96 -0.36 -11.51 15 11 H 0.11 2.81 7.85 -52.49 -0.41 2.40 15 12 C 0.07 1.72 5.50 -17.28 -0.10 1.63 15 13 N -0.77 -19.67 12.06 55.57 0.67 -19.00 15 14 Si 0.94 17.69 29.56 -169.99 -5.03 12.67 15 15 H -0.26 -4.80 7.11 56.52 0.40 -4.40 15 16 H -0.27 -4.98 7.11 56.52 0.40 -4.58 15 17 H -0.26 -4.80 7.11 56.52 0.40 -4.40 15 18 N -0.61 -17.09 11.61 -11.51 -0.13 -17.23 15 19 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 15 20 H 0.06 0.69 8.12 -51.93 -0.42 0.27 15 21 H 0.07 0.94 6.47 -51.93 -0.34 0.60 15 22 H 0.07 0.81 8.12 -51.93 -0.42 0.39 15 23 H 0.07 0.67 8.12 -51.93 -0.42 0.25 15 24 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 15 25 H 0.03 0.65 8.12 -51.93 -0.42 0.23 15 26 H 0.08 1.47 8.06 -51.93 -0.42 1.05 15 27 H 0.09 1.67 8.14 -51.93 -0.42 1.24 15 28 H 0.07 1.32 6.55 -51.93 -0.34 0.98 15 29 H 0.29 6.66 8.29 -40.82 -0.34 6.32 15 LS Contribution 255.43 15.07 3.85 3.85 Total: -1.00 -30.38 255.43 -5.76 -36.14 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -3.60 Total: 0.10 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -0.79 Total: 4.12 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.34 Total: -58.34 kcal Atomic # 8 Polarization: 1.32 SS G_CDS: 0.15 Total: 1.47 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.67 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.38 -5.76 -36.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234226838.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.023 kcal (2) G-P(sol) polarization free energy of solvation -30.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds