Wall clock time and date at job start Mon Mar 30 2020 03:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 110.99953 * 2 1 4 4 C 1.46896 * 111.00141 * 123.95308 * 2 1 3 5 5 C 1.53002 * 109.47243 * 66.04370 * 4 2 1 6 6 C 1.50706 * 109.46925 * 180.02562 * 5 4 2 7 7 N 1.30450 * 126.07274 * 90.02970 * 6 5 4 8 8 O 1.21273 * 110.68586 * 179.97438 * 7 6 5 9 9 C 1.34757 * 109.53374 * 0.02562 * 8 7 6 10 10 C 1.40340 * 126.79168 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99645 * 179.97438 * 10 9 8 12 12 C 1.40458 * 120.00464 * 359.97438 * 10 9 8 13 13 N 1.30510 * 119.99849 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00164 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.47164 * 59.99592 * 14 12 10 16 16 H 1.48502 * 109.47236 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47355 * 299.99794 * 14 12 10 18 18 N 1.33330 * 106.40929 * 359.73801 * 9 8 7 19 19 H 1.09004 * 109.47324 * 296.04620 * 1 2 3 20 20 H 1.09000 * 109.47134 * 56.04693 * 1 2 3 21 21 H 1.09002 * 109.47308 * 176.05293 * 1 2 3 22 22 H 1.08997 * 109.47247 * 183.95659 * 3 2 1 23 23 H 1.09002 * 109.46766 * 303.95244 * 3 2 1 24 24 H 1.09002 * 109.47469 * 63.95032 * 3 2 1 25 25 H 1.09004 * 109.47041 * 306.04581 * 4 2 1 26 26 H 1.09004 * 109.47535 * 186.04620 * 4 2 1 27 27 H 1.09000 * 109.46497 * 60.00307 * 5 4 2 28 28 H 1.09000 * 109.47312 * 300.00087 * 5 4 2 29 29 H 0.96995 * 120.00153 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6314 -2.2426 0.9704 6 6 2.1711 -3.0282 2.1378 7 7 1.5461 -3.2667 3.2577 8 8 2.2392 -3.9261 4.0031 9 6 3.4214 -4.1831 3.4095 10 6 4.4907 -4.9153 3.9480 11 1 5.3936 -5.0552 3.3721 12 6 4.3867 -5.4663 5.2358 13 7 3.2959 -5.2968 5.9319 14 14 5.8098 -6.4414 5.9522 15 1 7.0143 -5.5761 6.0283 16 1 5.4516 -6.9114 7.3146 17 1 6.0951 -7.6116 5.0835 18 7 3.3720 -3.6086 2.2073 19 1 -0.3634 0.4513 0.9233 20 1 -0.3633 0.5740 -0.8524 21 1 -0.3634 -1.0252 -0.0707 22 1 3.0827 1.3432 -0.0709 23 1 1.5898 1.9163 -0.8525 24 1 1.7043 1.8724 0.9233 25 1 1.5611 -0.3872 2.0628 26 1 3.0798 -0.6611 1.1756 27 1 2.0658 -2.6213 0.0452 28 1 0.5472 -2.3475 0.9324 29 1 3.2242 -5.6769 6.8214 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234226838.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:20 Heat of formation + Delta-G solvation = 22.383078 kcal Electronic energy + Delta-G solvation = -13644.269720 eV Core-core repulsion = 11182.979871 eV Total energy + Delta-G solvation = -2461.289849 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.05845 -38.74249 -36.07961 -35.89086 -33.19823 -31.11446 -28.53823 -28.49452 -26.09781 -23.63636 -22.84149 -21.86771 -19.53519 -17.89532 -17.38336 -16.98306 -16.54228 -16.25308 -15.70154 -15.22117 -14.45191 -14.17386 -13.59037 -13.42982 -13.35209 -13.08155 -12.99748 -12.60916 -12.58555 -12.23159 -12.01508 -11.89733 -11.79918 -11.33735 -10.98595 -10.30407 -9.41717 -8.96176 -7.10834 0.98120 1.40866 1.54735 1.59384 2.00088 2.15415 2.84703 3.01871 3.28466 3.65714 3.81575 4.04549 4.21134 4.34737 4.42940 4.50571 4.67537 4.71849 4.90940 4.92863 4.95606 4.97883 5.04528 5.52319 5.86546 5.91613 6.05634 6.06953 6.29168 6.44085 8.05913 8.30060 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.076351 B = 0.006229 C = 0.006016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.641497 B = 4494.266259 C = 4653.331302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.553 5.553 3 C 0.024 3.976 4 C 0.079 3.921 5 C -0.004 4.004 6 C 0.169 3.831 7 N -0.499 5.499 8 O 0.010 5.990 9 C 0.268 3.732 10 C -0.434 4.434 11 H 0.123 0.877 12 C 0.028 3.972 13 N -0.796 5.796 14 Si 1.023 2.977 15 H -0.250 1.250 16 H -0.259 1.259 17 H -0.250 1.250 18 N -0.637 5.637 19 H 0.023 0.977 20 H 0.092 0.908 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.092 0.908 24 H 0.024 0.976 25 H 0.021 0.979 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.251 5.632 -4.586 7.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.277 5.277 3 C -0.124 4.124 4 C -0.051 4.051 5 C -0.044 4.044 6 C -0.106 4.106 7 N -0.234 5.234 8 O -0.031 6.031 9 C 0.080 3.920 10 C -0.471 4.471 11 H 0.141 0.859 12 C -0.194 4.194 13 N -0.423 5.423 14 Si 0.839 3.161 15 H -0.174 1.174 16 H -0.183 1.183 17 H -0.173 1.173 18 N -0.383 5.383 19 H 0.041 0.959 20 H 0.110 0.890 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.110 0.890 24 H 0.042 0.958 25 H 0.039 0.961 26 H 0.085 0.915 27 H 0.112 0.888 28 H 0.106 0.894 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.827 5.731 -5.020 7.664 hybrid contribution 0.074 -0.087 1.349 1.354 sum -0.753 5.644 -3.671 6.775 Atomic orbital electron populations 1.22539 0.86321 1.02892 1.01232 1.61982 1.09181 1.14831 1.41684 1.22458 1.01088 0.87547 1.01304 1.21780 0.99853 0.92002 0.91423 1.19703 1.00473 0.92530 0.91666 1.25741 0.89686 0.99209 0.96011 1.74241 1.22159 1.20993 1.06028 1.85462 1.23699 1.55326 1.38601 1.24874 0.87840 0.93184 0.86104 1.19132 0.98825 1.27952 1.01194 0.85934 1.27419 1.00866 0.95523 0.95592 1.69689 1.28014 1.32776 1.11828 0.84650 0.75654 0.78079 0.77730 1.17351 1.18312 1.17342 1.72234 1.20750 1.25844 1.19446 0.95860 0.88960 0.91313 0.91303 0.88966 0.95750 0.96105 0.91530 0.88765 0.89442 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.32 127.69 1.19 1.61 15 2 N -0.55 -15.38 5.02 -948.84 -4.76 -20.14 15 3 C 0.02 0.53 9.57 127.69 1.22 1.75 15 4 C 0.08 2.77 4.94 86.30 0.43 3.20 15 5 C 0.00 -0.18 5.77 29.85 0.17 0.00 15 6 C 0.17 8.83 7.43 138.61 1.03 9.86 15 7 N -0.50 -28.64 12.15 -56.64 -0.69 -29.33 15 8 O 0.01 0.64 9.74 64.19 0.63 1.26 15 9 C 0.27 15.99 7.82 85.06 0.66 16.65 15 10 C -0.43 -23.43 9.48 23.32 0.22 -23.21 15 11 H 0.12 6.15 7.85 -2.91 -0.02 6.12 15 12 C 0.03 1.35 5.50 85.43 0.47 1.82 15 13 N -0.80 -41.02 12.06 21.91 0.26 -40.75 15 14 Si 1.02 34.68 29.56 68.60 2.03 36.71 15 15 H -0.25 -8.09 7.11 99.48 0.71 -7.38 15 16 H -0.26 -8.13 7.11 99.48 0.71 -7.43 15 17 H -0.25 -8.09 7.11 99.48 0.71 -7.38 15 18 N -0.64 -36.50 11.61 -305.23 -3.54 -40.04 15 19 H 0.02 0.55 8.14 -2.39 -0.02 0.53 15 20 H 0.09 1.66 8.12 -2.39 -0.02 1.65 15 21 H 0.07 1.65 6.47 -2.39 -0.02 1.64 15 22 H 0.07 1.52 8.12 -2.39 -0.02 1.50 15 23 H 0.09 1.58 8.12 -2.39 -0.02 1.57 15 24 H 0.02 0.54 8.14 -2.39 -0.02 0.52 15 25 H 0.02 0.78 8.12 -2.38 -0.02 0.76 15 26 H 0.07 2.49 8.06 -2.39 -0.02 2.47 15 27 H 0.09 3.57 8.14 -2.39 -0.02 3.55 15 28 H 0.09 3.17 6.55 -2.39 -0.02 3.15 15 29 H 0.31 13.76 8.29 -92.71 -0.77 12.99 15 Total: -1.00 -66.83 255.43 0.46 -66.36 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 1.14 Total: 14.25 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 5.40 Total: 11.68 kcal Atomic # 7 Polarization: -121.54 SS G_CDS: -8.73 Total: -130.27 kcal Atomic # 8 Polarization: 0.64 SS G_CDS: 0.63 Total: 1.26 kcal Atomic # 14 Polarization: 34.68 SS G_CDS: 2.03 Total: 36.71 kcal Total: -66.83 0.46 -66.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234226838.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.746 kcal (2) G-P(sol) polarization free energy of solvation -66.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds