Wall clock time and date at job start Mon Mar 30 2020 03:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99793 * 2 1 4 4 C 1.53005 * 109.46760 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46932 * 305.61910 * 4 3 2 6 6 C 1.50704 * 109.46689 * 185.62226 * 4 3 2 7 7 H 1.07996 * 119.99732 * 245.66196 * 6 4 3 8 8 C 1.37874 * 119.99848 * 65.67202 * 6 4 3 9 9 N 1.31515 * 119.99940 * 197.02164 * 8 6 4 10 10 Si 1.86808 * 120.00350 * 16.74475 * 8 6 4 11 11 H 1.48503 * 109.47051 * 180.27840 * 10 8 6 12 12 H 1.48498 * 109.46789 * 300.27847 * 10 8 6 13 13 H 1.48500 * 109.47088 * 60.27557 * 10 8 6 14 14 C 1.50699 * 109.46941 * 65.62395 * 4 3 2 15 15 N 1.30523 * 126.34723 * 265.01930 * 14 4 3 16 16 N 1.28591 * 109.67391 * 179.97438 * 15 14 4 17 17 C 1.30523 * 109.67064 * 0.02562 * 16 15 14 18 18 C 1.50699 * 126.34287 * 179.97438 * 17 16 15 19 19 N 1.35491 * 107.31142 * 359.77450 * 17 16 15 20 20 H 0.96995 * 126.98177 * 180.22209 * 19 17 16 21 21 H 1.09003 * 109.47073 * 299.99892 * 1 2 3 22 22 H 1.08999 * 109.47629 * 59.99483 * 1 2 3 23 23 H 1.09001 * 109.47111 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46708 * 60.00461 * 3 2 1 25 25 H 1.08998 * 109.47112 * 300.00126 * 3 2 1 26 26 H 0.97003 * 120.00003 * 354.11574 * 9 8 6 27 27 H 1.09001 * 109.47117 * 89.97487 * 18 17 16 28 28 H 1.09002 * 109.47453 * 209.97502 * 18 17 16 29 29 H 1.09003 * 109.47270 * 329.97610 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8507 0.5592 0.8345 6 6 4.1478 2.5546 0.1386 7 1 4.7257 2.9727 -0.6724 8 6 3.9706 3.2740 1.3013 9 7 4.2013 4.5687 1.3151 10 14 3.3952 2.4113 2.8551 11 1 3.2774 3.4009 3.9560 12 1 2.0722 1.7824 2.6110 13 1 4.3785 1.3647 3.2332 14 6 3.9893 0.5607 -1.2951 15 7 4.2339 -0.7050 -1.4998 16 7 4.6003 -0.8834 -2.7194 17 6 4.6066 0.2605 -3.3481 18 6 4.9767 0.4841 -4.7917 19 7 4.2145 1.2089 -2.4634 20 1 4.1167 2.1591 -2.6318 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6885 1.8463 0.8900 25 1 1.6885 1.8464 -0.8900 26 1 4.5771 5.0028 0.5332 27 1 4.0861 0.3926 -5.4135 28 1 5.4000 1.4818 -4.9080 29 1 5.7116 -0.2604 -5.0979 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259395763.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:07 Heat of formation + Delta-G solvation = 15.376036 kcal Electronic energy + Delta-G solvation = -14148.842904 eV Core-core repulsion = 11687.249206 eV Total energy + Delta-G solvation = -2461.593698 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.36993 -37.35631 -34.27571 -33.08768 -32.06512 -30.25455 -26.95686 -26.31683 -23.93810 -22.61407 -21.00680 -19.79722 -17.74450 -17.06644 -15.70301 -15.65978 -15.26137 -14.35240 -14.04819 -13.71032 -13.20010 -12.83980 -12.63710 -12.20443 -11.85666 -11.46184 -11.24227 -10.80179 -10.59836 -10.47828 -10.06736 -10.03465 -9.64541 -9.35452 -8.88957 -8.53097 -8.23069 -6.79430 -4.47665 2.53791 3.25843 3.35693 3.45418 3.54472 3.60869 4.25140 4.45728 4.83599 5.04133 5.27258 5.46504 5.56550 5.67864 5.71625 5.86534 5.96264 6.02320 6.15339 6.24834 6.33644 6.55649 6.84855 7.01259 7.50995 7.82100 7.87776 8.00927 8.49534 9.22913 9.49079 10.60878 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.027785 B = 0.012125 C = 0.009549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.478801 B = 2308.733327 C = 2931.566680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.059 3.941 4 C 0.103 3.897 5 H 0.066 0.934 6 C -0.614 4.614 7 H 0.062 0.938 8 C 0.042 3.958 9 N -0.887 5.887 10 Si 1.039 2.961 11 H -0.281 1.281 12 H -0.270 1.270 13 H -0.274 1.274 14 C 0.245 3.755 15 N -0.311 5.311 16 N -0.303 5.303 17 C 0.138 3.862 18 C -0.058 4.058 19 N -0.572 5.572 20 H 0.426 0.574 21 H 0.035 0.965 22 H 0.030 0.970 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.035 0.965 26 H 0.270 0.730 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.909 -3.142 -6.486 8.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C -0.019 4.019 4 C 0.081 3.919 5 H 0.083 0.917 6 C -0.652 4.652 7 H 0.080 0.920 8 C -0.166 4.166 9 N -0.518 5.518 10 Si 0.866 3.134 11 H -0.206 1.206 12 H -0.196 1.196 13 H -0.200 1.200 14 C -0.024 4.024 15 N -0.151 5.151 16 N -0.145 5.145 17 C -0.131 4.131 18 C -0.117 4.117 19 N -0.184 5.184 20 H 0.266 0.734 21 H 0.054 0.946 22 H 0.049 0.951 23 H 0.095 0.905 24 H 0.080 0.920 25 H 0.054 0.946 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.060 -4.678 -4.647 7.744 hybrid contribution 0.085 1.988 -2.020 2.835 sum -3.975 -2.690 -6.667 8.215 Atomic orbital electron populations 1.22619 0.82972 1.01661 0.99187 1.87994 1.18085 1.29479 1.95261 1.23415 0.95042 0.83222 1.00175 1.17731 0.90070 0.96998 0.87092 0.91660 1.21734 1.38581 1.00440 1.04428 0.92023 1.25845 0.94514 0.94909 1.01322 1.70894 1.38164 1.08306 1.34462 0.84109 0.77753 0.75768 0.75756 1.20640 1.19618 1.19966 1.25119 0.98583 0.88749 0.89913 1.74225 1.18483 1.13851 1.08492 1.74083 1.18339 1.21272 1.00828 1.24586 1.05917 0.86570 0.96021 1.20050 1.02390 1.03008 0.86258 1.43873 1.52045 1.12152 1.10379 0.73439 0.94612 0.95112 0.90458 0.91980 0.94631 0.91920 0.90449 0.91004 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 15 2 O -0.39 -8.29 10.47 -35.23 -0.37 -8.66 15 3 C 0.06 1.29 4.97 37.16 0.18 1.47 15 4 C 0.10 2.45 2.06 -92.92 -0.19 2.26 15 5 H 0.07 1.63 6.81 -51.93 -0.35 1.28 15 6 C -0.61 -15.74 8.67 -34.44 -0.30 -16.04 15 7 H 0.06 1.63 7.24 -52.49 -0.38 1.25 15 8 C 0.04 1.11 5.31 -17.82 -0.09 1.02 15 9 N -0.89 -24.86 13.69 55.43 0.76 -24.10 15 10 Si 1.04 23.61 26.28 -169.99 -4.47 19.14 15 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 12 H -0.27 -5.71 5.69 56.52 0.32 -5.38 15 13 H -0.27 -6.09 7.11 56.52 0.40 -5.68 15 14 C 0.25 5.67 6.75 -154.98 -1.05 4.62 15 15 N -0.31 -7.57 12.21 32.80 0.40 -7.17 15 16 N -0.30 -6.72 12.21 32.80 0.40 -6.32 15 17 C 0.14 2.53 8.30 -154.99 -1.29 1.25 15 18 C -0.06 -0.70 10.51 36.01 0.38 -0.32 15 19 N -0.57 -11.19 5.81 -7.60 -0.04 -11.23 15 20 H 0.43 7.34 8.36 -40.82 -0.34 7.00 15 21 H 0.04 0.53 8.14 -51.93 -0.42 0.11 15 22 H 0.03 0.46 8.14 -51.93 -0.42 0.04 15 23 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.06 1.37 4.80 -51.93 -0.25 1.12 15 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 15 26 H 0.27 7.48 8.73 -40.82 -0.36 7.13 15 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 15 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 15 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 15 LS Contribution 251.10 15.07 3.78 3.78 Total: -1.00 -31.27 251.10 -4.29 -35.56 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -3.51 Total: 3.10 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -1.24 Total: -4.09 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 1.52 Total: -48.82 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.37 Total: -8.66 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -4.47 Total: 19.14 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.27 -4.29 -35.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259395763.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.935 kcal (2) G-P(sol) polarization free energy of solvation -31.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds