Wall clock time and date at job start Mon Mar 30 2020 02:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.61377 * 59.29750 * 9 7 2 11 11 C 1.54576 * 110.68876 * 296.24297 * 9 7 2 12 12 C 1.51577 * 103.98566 * 221.09475 * 11 9 7 13 13 O 1.21280 * 125.50163 * 205.91411 * 12 11 9 14 14 N 1.33459 * 108.99758 * 25.93328 * 12 11 9 15 15 C 1.47431 * 128.50276 * 158.46793 * 14 12 11 16 16 C 1.53928 * 106.13764 * 232.56694 * 15 14 12 17 17 O 1.42731 * 109.87960 * 309.85888 * 16 15 14 18 18 C 1.43244 * 115.75989 * 62.23374 * 17 16 15 19 19 C 1.48268 * 111.05714 * 339.47862 * 14 12 11 20 20 H 1.09004 * 110.55508 * 246.59231 * 19 14 12 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.08995 * 110.52345 * 339.71451 * 11 9 7 23 23 H 1.08994 * 110.52827 * 102.46704 * 11 9 7 24 24 H 1.09006 * 110.10985 * 351.71801 * 15 14 12 25 25 H 1.08993 * 110.11153 * 113.40838 * 15 14 12 26 26 H 1.08995 * 109.40648 * 69.98526 * 16 15 14 27 27 H 1.09004 * 109.39940 * 189.82034 * 16 15 14 28 28 H 1.09006 * 109.70673 * 56.54718 * 18 17 16 29 29 H 1.08996 * 109.70994 * 177.17341 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6078 -2.5708 -0.8775 11 6 0.4247 -2.6526 1.2968 12 6 0.6113 -4.1072 1.6800 13 8 -0.1654 -4.7678 2.3367 14 7 1.7686 -4.5436 1.1785 15 6 2.5823 -5.6933 1.6141 16 6 4.0042 -5.1494 1.8413 17 8 4.4237 -4.3970 0.7033 18 6 3.6437 -3.2333 0.4045 19 6 2.2212 -3.6847 0.0579 20 1 2.2006 -4.2381 -0.8810 21 1 -0.4850 0.8401 0.0004 22 1 0.8139 -1.9989 2.0773 23 1 -0.6272 -2.4392 1.1074 24 1 2.1850 -6.1034 2.5426 25 1 2.5935 -6.4596 0.8391 26 1 4.0099 -4.5074 2.7221 27 1 4.6901 -5.9824 1.9960 28 1 3.6215 -2.5730 1.2715 29 1 4.0775 -2.7087 -0.4468 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259609084.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:07 Heat of formation + Delta-G solvation = -90.730928 kcal Electronic energy + Delta-G solvation = -14638.937465 eV Core-core repulsion = 12140.449873 eV Total energy + Delta-G solvation = -2498.487592 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.77226 -39.05767 -37.12696 -35.13813 -33.41184 -30.45656 -29.83158 -26.71504 -25.34741 -23.71309 -21.89962 -20.26605 -18.54340 -17.65259 -16.87356 -16.85023 -16.67042 -16.40517 -15.72475 -15.49470 -14.95826 -14.39112 -14.15793 -13.76744 -13.23182 -12.92325 -12.67580 -12.47152 -12.42139 -12.05517 -11.90819 -11.33177 -11.24225 -11.15061 -10.63044 -10.36997 -9.47158 -8.13662 -6.24849 1.48589 1.51047 1.51523 1.57600 2.01380 2.46035 2.89778 3.20064 3.66237 3.83268 4.03298 4.16007 4.27461 4.37958 4.43124 4.59087 4.69586 4.75605 4.79819 4.97794 5.10853 5.37948 5.49175 5.67658 5.81037 6.10212 6.18967 6.27887 6.82136 7.17216 7.45495 8.95958 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.036043 B = 0.012013 C = 0.009614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.670397 B = 2330.249984 C = 2911.696712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.018 3.982 3 Si 0.954 3.046 4 H -0.294 1.294 5 H -0.270 1.270 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.086 0.914 9 C 0.047 3.953 10 H 0.025 0.975 11 C -0.118 4.118 12 C 0.519 3.481 13 O -0.587 6.587 14 N -0.627 5.627 15 C 0.087 3.913 16 C 0.053 3.947 17 O -0.400 6.400 18 C 0.078 3.922 19 C 0.108 3.892 20 H 0.085 0.915 21 H 0.262 0.738 22 H 0.083 0.917 23 H 0.064 0.936 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.049 0.951 27 H 0.137 0.863 28 H 0.056 0.944 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.737 -6.273 1.116 10.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.182 4.182 3 Si 0.780 3.220 4 H -0.220 1.220 5 H -0.195 1.195 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.104 0.896 9 C 0.028 3.972 10 H 0.043 0.957 11 C -0.159 4.159 12 C 0.310 3.690 13 O -0.469 6.469 14 N -0.362 5.362 15 C -0.033 4.033 16 C -0.024 4.024 17 O -0.319 6.319 18 C 0.001 3.999 19 C 0.005 3.995 20 H 0.103 0.897 21 H 0.071 0.929 22 H 0.101 0.899 23 H 0.083 0.917 24 H 0.112 0.888 25 H 0.107 0.893 26 H 0.067 0.933 27 H 0.155 0.845 28 H 0.075 0.925 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.380 -6.638 1.382 10.779 hybrid contribution -0.550 1.096 0.167 1.238 sum 7.830 -5.542 1.550 9.717 Atomic orbital electron populations 1.70088 1.07525 1.27678 1.50329 1.25761 0.95448 1.02561 0.94427 0.85655 0.78283 0.78901 0.79132 1.21997 1.19507 1.19043 1.21479 0.94071 0.89738 1.51552 0.89569 1.19243 0.92580 0.92672 0.92685 0.95663 1.22298 1.02020 0.90188 1.01355 1.21392 0.80201 0.90299 0.77138 1.90571 1.47891 1.64430 1.44013 1.48831 1.21959 1.30055 1.35337 1.22698 0.91189 0.87753 1.01694 1.23145 0.94412 0.96689 0.88197 1.87760 1.55039 1.40522 1.48544 1.23058 0.89069 0.85973 1.01793 1.22671 0.96504 0.91801 0.88556 0.89687 0.92926 0.89921 0.91718 0.88811 0.89343 0.93298 0.84485 0.92545 0.86635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.93 12.63 21.45 0.27 -49.66 15 2 C 0.02 0.92 5.34 84.66 0.45 1.37 15 3 Si 0.95 39.85 29.54 68.60 2.03 41.88 15 4 H -0.29 -12.54 7.11 99.48 0.71 -11.83 15 5 H -0.27 -10.94 7.11 99.48 0.71 -10.24 15 6 H -0.27 -10.63 7.11 99.48 0.71 -9.92 15 7 C -0.53 -25.20 7.58 25.60 0.19 -25.01 15 8 H 0.09 3.75 5.13 -2.91 -0.01 3.74 15 9 C 0.05 2.16 2.95 -10.90 -0.03 2.12 15 10 H 0.03 1.26 8.14 -2.39 -0.02 1.24 15 11 C -0.12 -5.56 5.64 30.66 0.17 -5.39 15 12 C 0.52 23.18 8.02 88.14 0.71 23.89 15 13 O -0.59 -29.07 17.97 -3.03 -0.05 -29.12 15 14 N -0.63 -23.46 2.97 -789.24 -2.35 -25.81 15 15 C 0.09 2.46 7.19 86.51 0.62 3.08 15 16 C 0.05 1.30 7.00 72.30 0.51 1.81 15 17 O -0.40 -12.07 10.63 -148.98 -1.58 -13.66 15 18 C 0.08 2.62 4.88 72.05 0.35 2.97 15 19 C 0.11 4.03 3.79 44.82 0.17 4.20 15 20 H 0.09 3.00 8.14 -2.38 -0.02 2.98 15 21 H 0.26 13.78 8.31 -92.71 -0.77 13.01 15 22 H 0.08 4.05 7.84 -2.39 -0.02 4.03 15 23 H 0.06 3.31 8.14 -2.39 -0.02 3.29 15 24 H 0.09 2.54 8.13 -2.38 -0.02 2.52 15 25 H 0.09 2.20 8.14 -2.39 -0.02 2.18 15 26 H 0.05 1.25 8.14 -2.39 -0.02 1.23 15 27 H 0.14 2.31 8.14 -2.38 -0.02 2.29 15 28 H 0.06 2.06 7.27 -2.38 -0.02 2.04 15 29 H 0.12 3.70 7.32 -2.39 -0.02 3.68 15 Total: -1.00 -59.69 240.30 2.60 -57.08 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 1.15 Total: 10.23 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 3.14 Total: 9.05 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -2.08 Total: -75.47 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -1.64 Total: -42.78 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -59.69 2.60 -57.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259609084.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.647 kcal (2) G-P(sol) polarization free energy of solvation -59.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds