Wall clock time and date at job start Mon Mar 30 2020 02:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99712 * 2 1 4 4 H 1.48500 * 109.47073 * 240.00144 * 3 2 1 5 5 H 1.48504 * 109.46946 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47180 * 120.00012 * 3 2 1 7 7 C 1.37873 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99677 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00359 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.74039 * 303.14068 * 9 7 2 11 11 C 1.54543 * 110.68503 * 66.28298 * 9 7 2 12 12 C 1.51524 * 104.24008 * 98.28893 * 11 9 7 13 13 O 1.21278 * 125.40180 * 203.75110 * 12 11 9 14 14 N 1.33474 * 109.19787 * 23.73390 * 12 11 9 15 15 C 1.47648 * 127.79059 * 158.60459 * 14 12 11 16 16 C 1.53931 * 105.98314 * 235.79387 * 15 14 12 17 17 O 1.42723 * 109.92215 * 309.91905 * 16 15 14 18 18 C 1.43265 * 115.80453 * 62.30487 * 17 16 15 19 19 C 1.47646 * 111.49057 * 342.75233 * 14 12 11 20 20 H 1.09000 * 110.38218 * 242.89170 * 19 14 12 21 21 H 0.96993 * 120.00301 * 359.97438 * 1 2 3 22 22 H 1.09001 * 110.47941 * 339.60443 * 11 9 7 23 23 H 1.08997 * 110.59099 * 217.03717 * 11 9 7 24 24 H 1.09000 * 110.14116 * 354.90960 * 15 14 12 25 25 H 1.09004 * 110.14206 * 116.67651 * 15 14 12 26 26 H 1.09001 * 109.39699 * 70.05429 * 16 15 14 27 27 H 1.08996 * 109.39949 * 189.78292 * 16 15 14 28 28 H 1.09004 * 109.71416 * 177.24103 * 18 17 16 29 29 H 1.08997 * 109.72496 * 56.58572 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 1 0.5752 -2.5555 0.8515 11 6 0.4752 -2.6803 -1.3258 12 6 1.3676 -3.5755 -2.1614 13 8 1.3588 -3.6433 -3.3723 14 7 2.1653 -4.2773 -1.3535 15 6 2.8656 -5.5429 -1.6497 16 6 2.4230 -6.5371 -0.5610 17 8 2.5751 -5.9453 0.7288 18 6 1.7828 -4.7777 0.9766 19 6 2.2226 -3.6852 -0.0022 20 1 3.2369 -3.3579 0.2262 21 1 -0.4850 0.8400 0.0004 22 1 0.3314 -1.7186 -1.8183 23 1 -0.4856 -3.1621 -1.1443 24 1 2.5760 -5.9107 -2.6340 25 1 3.9446 -5.3940 -1.6058 26 1 1.3772 -6.8023 -0.7165 27 1 3.0359 -7.4364 -0.6211 28 1 1.9383 -4.4383 2.0007 29 1 0.7289 -5.0083 0.8210 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259609086.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:10 Heat of formation + Delta-G solvation = -76.788176 kcal Electronic energy + Delta-G solvation = -14552.814340 eV Core-core repulsion = 12054.931351 eV Total energy + Delta-G solvation = -2497.882989 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.16372 -37.54446 -35.42873 -33.34895 -31.83131 -28.91818 -28.03433 -25.43130 -23.64943 -22.04460 -20.24984 -18.73317 -16.74147 -16.30567 -15.55139 -15.20845 -15.02375 -14.78250 -14.21930 -14.08690 -13.18751 -12.74349 -12.45268 -12.03801 -11.61180 -11.38478 -10.97343 -10.85554 -10.75186 -10.67841 -10.31945 -9.94592 -9.54971 -9.20427 -8.97860 -8.47576 -7.93932 -6.18018 -4.24506 3.26738 3.31811 3.34580 3.37248 3.56789 4.02283 4.33244 5.01507 5.12368 5.20915 5.26439 5.56291 5.59245 5.66366 5.73744 5.94009 6.05632 6.13445 6.34202 6.45230 6.67098 7.20311 7.32228 7.38874 7.50273 7.75751 7.84778 8.16139 8.76809 8.96435 9.42310 10.90609 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.041149 B = 0.010514 C = 0.009508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.289857 B = 2662.562819 C = 2944.047536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.054 3.946 10 H 0.056 0.944 11 C -0.136 4.136 12 C 0.532 3.468 13 O -0.558 6.558 14 N -0.631 5.631 15 C 0.092 3.908 16 C 0.052 3.948 17 O -0.391 6.391 18 C 0.054 3.946 19 C 0.103 3.897 20 H 0.084 0.916 21 H 0.265 0.735 22 H 0.106 0.894 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.575 -8.966 1.807 9.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.078 0.922 9 C 0.035 3.965 10 H 0.074 0.926 11 C -0.177 4.177 12 C 0.322 3.678 13 O -0.437 6.437 14 N -0.367 5.367 15 C -0.030 4.030 16 C -0.026 4.026 17 O -0.309 6.309 18 C -0.023 4.023 19 C 0.000 4.000 20 H 0.102 0.898 21 H 0.075 0.925 22 H 0.124 0.876 23 H 0.092 0.908 24 H 0.106 0.894 25 H 0.090 0.910 26 H 0.068 0.932 27 H 0.116 0.884 28 H 0.123 0.877 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.573 -8.994 1.253 9.438 hybrid contribution 0.301 1.006 -0.252 1.080 sum 2.875 -7.988 1.001 8.549 Atomic orbital electron populations 1.69927 1.05927 1.27282 1.49068 1.24964 0.94914 0.99328 0.94440 0.86588 0.79632 0.82671 0.78801 1.20138 1.21131 1.20042 1.21033 0.92899 0.89679 1.52349 0.92155 1.19294 0.92400 0.90944 0.93848 0.92608 1.22486 0.96419 0.99837 0.98942 1.21354 0.79782 0.79835 0.86790 1.90587 1.70874 1.68614 1.13664 1.48656 1.49245 1.24678 1.14083 1.22370 0.97347 0.84115 0.99177 1.22964 1.00794 0.95235 0.83624 1.87751 1.67138 1.43887 1.32143 1.23223 0.94289 0.84633 1.00111 1.22786 1.02537 0.94081 0.80601 0.89809 0.92527 0.87581 0.90830 0.89369 0.91018 0.93214 0.88399 0.87727 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.94 12.36 55.43 0.69 -23.26 15 2 C 0.07 1.75 5.12 -17.82 -0.09 1.66 15 3 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 15 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 15 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 7 C -0.52 -13.41 8.47 -34.44 -0.29 -13.70 15 8 H 0.06 1.55 7.45 -52.49 -0.39 1.16 15 9 C 0.05 1.23 2.58 -90.80 -0.23 1.00 15 10 H 0.06 1.30 7.82 -51.93 -0.41 0.89 15 11 C -0.14 -3.15 6.07 -26.67 -0.16 -3.31 15 12 C 0.53 12.18 8.03 -11.16 -0.09 12.09 15 13 O -0.56 -14.19 17.89 5.56 0.10 -14.09 15 14 N -0.63 -12.44 2.97 -163.52 -0.49 -12.92 15 15 C 0.09 1.44 7.19 -2.93 -0.02 1.42 15 16 C 0.05 0.70 7.00 37.64 0.26 0.96 15 17 O -0.39 -6.20 10.62 -35.23 -0.37 -6.58 15 18 C 0.05 0.89 6.31 37.22 0.23 1.13 15 19 C 0.10 2.02 3.38 -67.08 -0.23 1.79 15 20 H 0.08 1.69 7.55 -51.93 -0.39 1.30 15 21 H 0.27 6.90 8.31 -40.82 -0.34 6.56 15 22 H 0.11 2.77 6.98 -51.93 -0.36 2.41 15 23 H 0.07 1.57 8.14 -51.93 -0.42 1.15 15 24 H 0.09 1.32 8.06 -51.93 -0.42 0.90 15 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 27 H 0.10 1.02 8.14 -51.93 -0.42 0.60 15 28 H 0.10 1.56 8.14 -51.93 -0.42 1.14 15 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 LS Contribution 243.87 15.07 3.67 3.67 Total: -1.00 -29.45 243.87 -5.68 -35.13 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -3.64 Total: -0.52 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -0.62 Total: 3.03 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.20 Total: -36.18 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.27 Total: -20.67 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.45 -5.68 -35.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259609086.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.660 kcal (2) G-P(sol) polarization free energy of solvation -29.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds