Wall clock time and date at job start Mon Mar 30 2020 02:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99712 * 2 1 4 4 H 1.48500 * 109.47073 * 240.00144 * 3 2 1 5 5 H 1.48504 * 109.46946 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47180 * 120.00012 * 3 2 1 7 7 C 1.37873 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99677 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00359 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.74039 * 303.14068 * 9 7 2 11 11 C 1.54543 * 110.68503 * 66.28298 * 9 7 2 12 12 C 1.51524 * 104.24008 * 98.28893 * 11 9 7 13 13 O 1.21278 * 125.40180 * 203.75110 * 12 11 9 14 14 N 1.33474 * 109.19787 * 23.73390 * 12 11 9 15 15 C 1.47648 * 127.79059 * 158.60459 * 14 12 11 16 16 C 1.53931 * 105.98314 * 235.79387 * 15 14 12 17 17 O 1.42723 * 109.92215 * 309.91905 * 16 15 14 18 18 C 1.43265 * 115.80453 * 62.30487 * 17 16 15 19 19 C 1.47646 * 111.49057 * 342.75233 * 14 12 11 20 20 H 1.09000 * 110.38218 * 242.89170 * 19 14 12 21 21 H 0.96993 * 120.00301 * 359.97438 * 1 2 3 22 22 H 1.09001 * 110.47941 * 339.60443 * 11 9 7 23 23 H 1.08997 * 110.59099 * 217.03717 * 11 9 7 24 24 H 1.09000 * 110.14116 * 354.90960 * 15 14 12 25 25 H 1.09004 * 110.14206 * 116.67651 * 15 14 12 26 26 H 1.09001 * 109.39699 * 70.05429 * 16 15 14 27 27 H 1.08996 * 109.39949 * 189.78292 * 16 15 14 28 28 H 1.09004 * 109.71416 * 177.24103 * 18 17 16 29 29 H 1.08997 * 109.72496 * 56.58572 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 1 0.5752 -2.5555 0.8515 11 6 0.4752 -2.6803 -1.3258 12 6 1.3676 -3.5755 -2.1614 13 8 1.3588 -3.6433 -3.3723 14 7 2.1653 -4.2773 -1.3535 15 6 2.8656 -5.5429 -1.6497 16 6 2.4230 -6.5371 -0.5610 17 8 2.5751 -5.9453 0.7288 18 6 1.7828 -4.7777 0.9766 19 6 2.2226 -3.6852 -0.0022 20 1 3.2369 -3.3579 0.2262 21 1 -0.4850 0.8400 0.0004 22 1 0.3314 -1.7186 -1.8183 23 1 -0.4856 -3.1621 -1.1443 24 1 2.5760 -5.9107 -2.6340 25 1 3.9446 -5.3940 -1.6058 26 1 1.3772 -6.8023 -0.7165 27 1 3.0359 -7.4364 -0.6211 28 1 1.9383 -4.4383 2.0007 29 1 0.7289 -5.0083 0.8210 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259609086.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:10 Heat of formation + Delta-G solvation = -96.764993 kcal Electronic energy + Delta-G solvation = -14553.680600 eV Core-core repulsion = 12054.931351 eV Total energy + Delta-G solvation = -2498.749249 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.76491 -39.05480 -37.13417 -35.07198 -33.48005 -30.50342 -29.61414 -27.24572 -25.10503 -23.51168 -21.97580 -20.35370 -18.59132 -17.81989 -16.95414 -16.86367 -16.62039 -16.37553 -15.72782 -15.61183 -14.84195 -14.43154 -14.14021 -13.72398 -13.22732 -12.91035 -12.78354 -12.61124 -12.39683 -12.20070 -12.00112 -11.33316 -11.19074 -11.13169 -10.81751 -10.41032 -9.47891 -8.18521 -6.29837 1.43290 1.45166 1.51576 1.57326 2.04645 2.41409 2.84354 3.13440 3.65932 3.78298 4.04290 4.12354 4.22443 4.38182 4.41392 4.59645 4.63733 4.69610 4.77813 4.89280 5.02312 5.43249 5.58116 5.65997 5.75633 6.10851 6.18092 6.25601 6.76677 7.20730 7.39630 8.89335 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.041149 B = 0.010514 C = 0.009508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.289857 B = 2662.562819 C = 2944.047536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.950 3.050 4 H -0.281 1.281 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.056 0.944 9 C 0.052 3.948 10 H 0.050 0.950 11 C -0.132 4.132 12 C 0.526 3.474 13 O -0.591 6.591 14 N -0.625 5.625 15 C 0.084 3.916 16 C 0.054 3.946 17 O -0.394 6.394 18 C 0.064 3.936 19 C 0.107 3.893 20 H 0.078 0.922 21 H 0.265 0.735 22 H 0.070 0.930 23 H 0.086 0.914 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.055 0.945 27 H 0.138 0.862 28 H 0.121 0.879 29 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.497 -10.223 2.578 11.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.178 4.178 3 Si 0.776 3.224 4 H -0.207 1.207 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.574 4.574 8 H 0.074 0.926 9 C 0.033 3.967 10 H 0.068 0.932 11 C -0.173 4.173 12 C 0.317 3.683 13 O -0.473 6.473 14 N -0.359 5.359 15 C -0.036 4.036 16 C -0.024 4.024 17 O -0.312 6.312 18 C -0.013 4.013 19 C 0.004 3.996 20 H 0.096 0.904 21 H 0.074 0.926 22 H 0.089 0.911 23 H 0.105 0.895 24 H 0.113 0.887 25 H 0.102 0.898 26 H 0.073 0.927 27 H 0.156 0.844 28 H 0.139 0.861 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.522 -10.282 2.059 11.062 hybrid contribution 0.042 1.355 -0.508 1.448 sum 3.564 -8.927 1.551 9.736 Atomic orbital electron populations 1.70015 1.06978 1.27818 1.49968 1.25640 0.95637 1.02193 0.94360 0.85729 0.78540 0.79387 0.78751 1.20671 1.20878 1.18919 1.21371 0.92963 0.91197 1.51893 0.92603 1.19197 0.92816 0.91426 0.93230 0.93156 1.22349 0.97559 0.98465 0.98936 1.21228 0.80417 0.80222 0.86443 1.90560 1.72150 1.69800 1.14803 1.48721 1.48219 1.25433 1.13548 1.22754 0.97741 0.82522 1.00619 1.23171 1.02055 0.95470 0.81661 1.87764 1.67003 1.43208 1.33267 1.23118 0.94573 0.83792 0.99840 1.22672 1.01334 0.94169 0.81441 0.90364 0.92623 0.91125 0.89543 0.88732 0.89757 0.92667 0.84428 0.86128 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.80 12.36 21.45 0.27 -49.54 15 2 C 0.02 1.18 5.12 84.65 0.43 1.61 15 3 Si 0.95 42.19 29.54 68.60 2.03 44.22 15 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 15 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 15 6 H -0.26 -11.21 7.11 99.48 0.71 -10.50 15 7 C -0.54 -27.68 8.47 25.60 0.22 -27.46 15 8 H 0.06 2.86 7.45 -2.91 -0.02 2.84 15 9 C 0.05 2.38 2.58 -10.91 -0.03 2.35 15 10 H 0.05 2.34 7.82 -2.39 -0.02 2.32 15 11 C -0.13 -6.20 6.07 30.64 0.19 -6.01 15 12 C 0.53 24.07 8.03 88.12 0.71 24.78 15 13 O -0.59 -30.23 17.89 -3.02 -0.05 -30.28 15 14 N -0.62 -23.76 2.97 -790.38 -2.35 -26.11 15 15 C 0.08 2.40 7.19 86.47 0.62 3.03 15 16 C 0.05 1.24 7.00 72.30 0.51 1.74 15 17 O -0.39 -11.08 10.62 -148.98 -1.58 -12.66 15 18 C 0.06 1.93 6.31 72.02 0.45 2.38 15 19 C 0.11 4.03 3.38 44.92 0.15 4.18 15 20 H 0.08 3.06 7.55 -2.39 -0.02 3.04 15 21 H 0.26 13.92 8.31 -92.71 -0.77 13.15 15 22 H 0.07 3.81 6.98 -2.39 -0.02 3.79 15 23 H 0.09 3.72 8.14 -2.39 -0.02 3.71 15 24 H 0.09 2.60 8.06 -2.39 -0.02 2.58 15 25 H 0.08 2.22 8.14 -2.38 -0.02 2.20 15 26 H 0.06 1.26 8.14 -2.39 -0.02 1.24 15 27 H 0.14 2.17 8.14 -2.39 -0.02 2.15 15 28 H 0.12 3.26 8.14 -2.39 -0.02 3.24 15 29 H 0.06 1.74 8.14 -2.39 -0.02 1.72 15 Total: -1.00 -62.59 243.87 2.69 -59.90 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 1.14 Total: 7.87 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 3.25 Total: 6.60 kcal Atomic # 7 Polarization: -73.57 SS G_CDS: -2.08 Total: -75.65 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -1.64 Total: -42.94 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -62.59 2.69 -59.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259609086.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.866 kcal (2) G-P(sol) polarization free energy of solvation -62.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds