Wall clock time and date at job start Mon Mar 30 2020 02:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30254 * 125.62204 * 2 1 4 4 C 1.34476 * 108.70324 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.16269 * 180.02562 * 4 3 2 6 6 C 1.34325 * 107.66972 * 0.02562 * 4 3 2 7 7 C 1.50694 * 126.44529 * 180.02562 * 6 4 3 8 8 C 1.53006 * 109.46919 * 300.86863 * 7 6 4 9 9 O 1.42907 * 109.47311 * 180.87194 * 7 6 4 10 10 C 1.50700 * 109.47597 * 60.86812 * 7 6 4 11 11 H 1.08006 * 119.99269 * 0.02562 * 10 7 6 12 12 C 1.37866 * 120.00449 * 180.02562 * 10 7 6 13 13 N 1.31513 * 120.00059 * 359.97438 * 12 10 7 14 14 Si 1.86806 * 120.00362 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.46848 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47118 * 119.99492 * 14 12 10 17 17 H 1.48494 * 109.47032 * 240.00074 * 14 12 10 18 18 O 1.33970 * 125.61622 * 180.29945 * 2 1 3 19 19 H 1.09001 * 109.47528 * 90.01757 * 1 2 3 20 20 H 1.08998 * 109.47084 * 210.01848 * 1 2 3 21 21 H 1.09003 * 109.46979 * 330.01605 * 1 2 3 22 22 H 1.09008 * 109.46782 * 264.62055 * 5 4 3 23 23 H 1.08996 * 109.47788 * 24.61869 * 5 4 3 24 24 H 1.08998 * 109.47045 * 144.62540 * 5 4 3 25 25 H 1.09005 * 109.46991 * 306.73954 * 8 7 6 26 26 H 1.08999 * 109.47089 * 66.74174 * 8 7 6 27 27 H 1.08998 * 109.47000 * 186.74443 * 8 7 6 28 28 H 0.96697 * 113.99304 * 299.99688 * 9 7 6 29 29 H 0.97008 * 120.00489 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6675 0.0006 5 6 4.7570 1.5727 0.0013 6 6 3.5698 -0.6757 0.0004 7 6 4.7937 -1.5549 0.0014 8 6 5.6408 -1.2512 -1.2360 9 8 4.3946 -2.9270 -0.0198 10 6 5.6041 -1.2866 1.2432 11 1 5.2664 -0.5529 1.9603 12 6 6.7766 -1.9775 1.4640 13 7 7.1875 -2.8712 0.5911 14 14 7.7815 -1.6443 3.0030 15 1 7.1081 -0.6012 3.8177 16 1 7.8996 -2.8935 3.7972 17 1 9.1358 -1.1729 2.6174 18 8 2.2872 -1.0891 -0.0057 19 1 -0.3634 -0.0003 -1.0276 20 1 -0.3633 -0.8898 0.5141 21 1 -0.3633 0.8902 0.5136 22 1 5.1059 1.7140 -1.0217 23 1 4.4863 2.5378 0.4294 24 1 5.5505 1.1209 0.5966 25 1 5.0207 -1.3295 -2.1291 26 1 6.0443 -0.2413 -1.1612 27 1 6.4610 -1.9663 -1.2993 28 1 3.8532 -3.1907 0.7368 29 1 8.0123 -3.3576 0.7465 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259730995.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:56 Heat of formation + Delta-G solvation = -38.587719 kcal Electronic energy + Delta-G solvation = -14480.320362 eV Core-core repulsion = 11984.093869 eV Total energy + Delta-G solvation = -2496.226493 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.54367 -36.42945 -34.42071 -32.43149 -32.15388 -29.74538 -28.23666 -25.71044 -25.25962 -21.21326 -20.88603 -19.55344 -17.19451 -16.27581 -15.87511 -14.84234 -14.66041 -13.78157 -13.43910 -12.91324 -12.67584 -12.55117 -12.31410 -11.99899 -11.60789 -11.47051 -11.11859 -11.00425 -10.80721 -10.57348 -10.27796 -10.15746 -10.14831 -9.29058 -8.71802 -8.58682 -7.56477 -6.15750 -4.37048 2.28961 3.19122 3.27801 3.30682 3.39549 3.45696 4.27904 4.63765 5.07141 5.43672 5.57044 5.64495 5.72564 5.86847 5.95596 6.30373 6.39414 6.53443 6.66910 6.75203 6.81990 6.94147 7.18321 7.34455 7.61058 7.78387 7.98230 8.47905 8.63836 9.15462 9.38623 10.84668 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.040170 B = 0.010701 C = 0.010089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.864449 B = 2615.908878 C = 2774.522132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C 0.139 3.861 3 N -0.482 5.482 4 C -0.038 4.038 5 C -0.067 4.067 6 C -0.016 4.016 7 C 0.331 3.669 8 C -0.119 4.119 9 O -0.554 6.554 10 C -0.559 4.559 11 H 0.063 0.937 12 C 0.085 3.915 13 N -0.853 5.853 14 Si 0.897 3.103 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.280 1.280 18 O -0.201 6.201 19 H 0.082 0.918 20 H 0.080 0.920 21 H 0.091 0.909 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.094 0.906 25 H 0.017 0.983 26 H 0.054 0.946 27 H 0.098 0.902 28 H 0.355 0.645 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.567 3.918 -0.558 7.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.068 4.068 3 N -0.214 5.214 4 C -0.158 4.158 5 C -0.124 4.124 6 C -0.070 4.070 7 C 0.291 3.709 8 C -0.177 4.177 9 O -0.356 6.356 10 C -0.597 4.597 11 H 0.081 0.919 12 C -0.122 4.122 13 N -0.488 5.488 14 Si 0.724 3.276 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.206 1.206 18 O -0.088 6.088 19 H 0.100 0.900 20 H 0.099 0.901 21 H 0.110 0.890 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.113 0.887 25 H 0.036 0.964 26 H 0.073 0.927 27 H 0.117 0.883 28 H 0.199 0.801 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.324 4.350 -1.187 7.767 hybrid contribution 0.377 -0.446 1.349 1.470 sum -5.946 3.904 0.162 7.115 Atomic orbital electron populations 1.20021 0.82453 1.04131 1.03643 1.25910 0.96121 0.79684 1.05053 1.70154 1.02253 1.30634 1.18357 1.21257 0.92421 0.92590 1.09489 1.20169 0.93235 0.96830 1.02146 1.25735 0.83421 0.96742 1.01062 1.17595 0.80854 0.76373 0.96097 1.21679 1.00459 1.02102 0.93414 1.86511 1.72888 1.28092 1.48152 1.21390 1.07477 1.25010 1.05793 0.91860 1.24952 0.96680 0.94028 0.96569 1.70020 1.21770 1.22716 1.34282 0.86469 0.79968 0.78410 0.82799 1.19529 1.20710 1.20574 1.84396 1.17230 1.37251 1.69934 0.89967 0.90067 0.89048 0.92025 0.92382 0.88727 0.96426 0.92713 0.88331 0.80111 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.57 10.51 36.01 0.38 -0.19 15 2 C 0.14 2.68 8.34 -12.95 -0.11 2.57 15 3 N -0.48 -10.29 11.29 -7.36 -0.08 -10.37 15 4 C -0.04 -0.86 6.91 -82.82 -0.57 -1.43 15 5 C -0.07 -1.30 8.77 36.00 0.32 -0.99 15 6 C -0.02 -0.38 5.76 -35.69 -0.21 -0.58 15 7 C 0.33 8.33 0.75 -92.92 -0.07 8.26 15 8 C -0.12 -2.88 8.27 37.16 0.31 -2.58 15 9 O -0.55 -14.35 12.22 -47.09 -0.58 -14.92 15 10 C -0.56 -14.62 6.63 -34.44 -0.23 -14.85 15 11 H 0.06 1.68 7.37 -52.48 -0.39 1.29 15 12 C 0.08 2.21 5.24 -17.82 -0.09 2.11 15 13 N -0.85 -23.17 10.95 55.43 0.61 -22.57 15 14 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 15 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 18 O -0.20 -4.47 10.59 -6.53 -0.07 -4.54 15 19 H 0.08 0.89 8.14 -51.93 -0.42 0.46 15 20 H 0.08 0.88 8.14 -51.93 -0.42 0.45 15 21 H 0.09 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.06 1.10 7.74 -51.92 -0.40 0.70 15 23 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 24 H 0.09 1.95 6.09 -51.93 -0.32 1.63 15 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 15 26 H 0.05 1.22 6.22 -51.93 -0.32 0.90 15 27 H 0.10 2.57 6.28 -51.93 -0.33 2.25 15 28 H 0.35 8.33 9.03 45.56 0.41 8.74 15 29 H 0.26 6.78 8.31 -40.82 -0.34 6.45 15 LS Contribution 248.84 15.07 3.75 3.75 Total: -1.00 -30.30 248.84 -4.26 -34.56 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -2.59 Total: 6.60 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -0.28 Total: -7.67 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.52 Total: -32.94 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.64 Total: -19.46 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.30 -4.26 -34.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259730995.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.030 kcal (2) G-P(sol) polarization free energy of solvation -30.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds