Wall clock time and date at job start Mon Mar 30 2020 02:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30254 * 125.62204 * 2 1 4 4 C 1.34476 * 108.70324 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.16269 * 180.02562 * 4 3 2 6 6 C 1.34325 * 107.66972 * 0.02562 * 4 3 2 7 7 C 1.50694 * 126.44529 * 180.02562 * 6 4 3 8 8 C 1.53006 * 109.46919 * 300.86863 * 7 6 4 9 9 O 1.42907 * 109.47311 * 180.87194 * 7 6 4 10 10 C 1.50700 * 109.47597 * 60.86812 * 7 6 4 11 11 H 1.08006 * 119.99269 * 0.02562 * 10 7 6 12 12 C 1.37866 * 120.00449 * 180.02562 * 10 7 6 13 13 N 1.31513 * 120.00059 * 359.97438 * 12 10 7 14 14 Si 1.86806 * 120.00362 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.46848 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47118 * 119.99492 * 14 12 10 17 17 H 1.48494 * 109.47032 * 240.00074 * 14 12 10 18 18 O 1.33970 * 125.61622 * 180.29945 * 2 1 3 19 19 H 1.09001 * 109.47528 * 90.01757 * 1 2 3 20 20 H 1.08998 * 109.47084 * 210.01848 * 1 2 3 21 21 H 1.09003 * 109.46979 * 330.01605 * 1 2 3 22 22 H 1.09008 * 109.46782 * 264.62055 * 5 4 3 23 23 H 1.08996 * 109.47788 * 24.61869 * 5 4 3 24 24 H 1.08998 * 109.47045 * 144.62540 * 5 4 3 25 25 H 1.09005 * 109.46991 * 306.73954 * 8 7 6 26 26 H 1.08999 * 109.47089 * 66.74174 * 8 7 6 27 27 H 1.08998 * 109.47000 * 186.74443 * 8 7 6 28 28 H 0.96697 * 113.99304 * 299.99688 * 9 7 6 29 29 H 0.97008 * 120.00489 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6675 0.0006 5 6 4.7570 1.5727 0.0013 6 6 3.5698 -0.6757 0.0004 7 6 4.7937 -1.5549 0.0014 8 6 5.6408 -1.2512 -1.2360 9 8 4.3946 -2.9270 -0.0198 10 6 5.6041 -1.2866 1.2432 11 1 5.2664 -0.5529 1.9603 12 6 6.7766 -1.9775 1.4640 13 7 7.1875 -2.8712 0.5911 14 14 7.7815 -1.6443 3.0030 15 1 7.1081 -0.6012 3.8177 16 1 7.8996 -2.8935 3.7972 17 1 9.1358 -1.1729 2.6174 18 8 2.2872 -1.0891 -0.0057 19 1 -0.3634 -0.0003 -1.0276 20 1 -0.3633 -0.8898 0.5141 21 1 -0.3633 0.8902 0.5136 22 1 5.1059 1.7140 -1.0217 23 1 4.4863 2.5378 0.4294 24 1 5.5505 1.1209 0.5966 25 1 5.0207 -1.3295 -2.1291 26 1 6.0443 -0.2413 -1.1612 27 1 6.4610 -1.9663 -1.2993 28 1 3.8532 -3.1907 0.7368 29 1 8.0123 -3.3576 0.7465 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259730995.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:55 Heat of formation + Delta-G solvation = -61.887621 kcal Electronic energy + Delta-G solvation = -14481.330721 eV Core-core repulsion = 11984.093869 eV Total energy + Delta-G solvation = -2497.236852 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.18097 -38.34994 -36.07786 -34.40603 -33.73488 -31.36441 -29.79546 -27.52277 -27.08858 -22.96323 -22.47718 -21.28513 -19.16526 -18.03765 -17.52923 -16.77994 -16.35558 -15.35144 -15.21427 -14.36633 -14.21030 -13.92230 -13.74216 -13.43809 -13.40671 -13.22833 -12.96701 -12.78249 -12.65321 -12.44848 -12.10469 -11.89716 -11.75426 -11.13499 -10.69553 -10.54437 -9.25581 -8.13484 -6.41575 0.65697 1.41566 1.44876 1.55255 1.75726 1.89085 2.41064 3.07934 3.22882 3.86967 4.10772 4.12535 4.55340 4.63005 4.66375 4.76785 4.82932 4.87711 4.93459 5.04984 5.15242 5.27034 5.41563 5.59563 5.65228 5.80391 6.01994 6.61015 6.85552 7.21593 7.39965 8.86574 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.040170 B = 0.010701 C = 0.010089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.864449 B = 2615.908878 C = 2774.522132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C 0.155 3.845 3 N -0.506 5.506 4 C -0.040 4.040 5 C -0.065 4.065 6 C -0.055 4.055 7 C 0.326 3.674 8 C -0.112 4.112 9 O -0.570 6.570 10 C -0.566 4.566 11 H 0.054 0.946 12 C 0.044 3.956 13 N -0.881 5.881 14 Si 0.959 3.041 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.273 1.273 18 O -0.216 6.216 19 H 0.108 0.892 20 H 0.102 0.898 21 H 0.111 0.889 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.021 0.979 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.360 0.640 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.588 4.832 -0.115 8.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.052 4.052 3 N -0.238 5.238 4 C -0.158 4.158 5 C -0.122 4.122 6 C -0.108 4.108 7 C 0.286 3.714 8 C -0.169 4.169 9 O -0.373 6.373 10 C -0.603 4.603 11 H 0.072 0.928 12 C -0.160 4.160 13 N -0.517 5.517 14 Si 0.784 3.216 15 H -0.195 1.195 16 H -0.206 1.206 17 H -0.198 1.198 18 O -0.104 6.104 19 H 0.126 0.874 20 H 0.121 0.879 21 H 0.130 0.870 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.205 0.795 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.341 5.281 -0.745 9.074 hybrid contribution 0.545 -0.708 1.186 1.485 sum -6.796 4.573 0.440 8.203 Atomic orbital electron populations 1.20447 0.77731 1.06208 1.05907 1.27396 0.98291 0.78481 1.00983 1.70226 1.01905 1.31304 1.20315 1.21665 0.93668 0.92524 1.07961 1.20195 0.91987 0.97054 1.02951 1.25348 0.83762 0.97011 1.04677 1.17534 0.81833 0.76133 0.95883 1.21584 0.99706 1.02050 0.93576 1.86471 1.73183 1.29053 1.48623 1.21493 1.07905 1.24782 1.06126 0.92820 1.25643 0.97511 0.93740 0.99140 1.70131 1.22236 1.23510 1.35803 0.85505 0.78641 0.78073 0.79375 1.19473 1.20601 1.19800 1.84377 1.17040 1.38457 1.70478 0.87403 0.87892 0.87007 0.90565 0.90568 0.90113 0.96015 0.91561 0.90546 0.79508 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.99 10.51 71.24 0.75 -0.24 15 2 C 0.16 5.68 8.34 88.34 0.74 6.42 15 3 N -0.51 -20.73 11.29 -291.98 -3.30 -24.03 15 4 C -0.04 -1.75 6.91 41.26 0.29 -1.47 15 5 C -0.06 -2.47 8.77 71.24 0.62 -1.84 15 6 C -0.05 -2.59 5.76 24.79 0.14 -2.45 15 7 C 0.33 16.58 0.75 -12.29 -0.01 16.57 15 8 C -0.11 -5.46 8.27 71.98 0.60 -4.87 15 9 O -0.57 -30.02 12.22 -137.64 -1.68 -31.70 15 10 C -0.57 -29.78 6.63 25.60 0.17 -29.61 15 11 H 0.05 2.87 7.37 -2.91 -0.02 2.85 15 12 C 0.04 2.29 5.24 84.65 0.44 2.74 15 13 N -0.88 -48.27 10.95 21.44 0.23 -48.03 15 14 Si 0.96 41.34 29.54 68.60 2.03 43.36 15 15 H -0.27 -11.51 7.11 99.48 0.71 -10.80 15 16 H -0.28 -11.96 7.11 99.48 0.71 -11.26 15 17 H -0.27 -11.36 7.11 99.48 0.71 -10.66 15 18 O -0.22 -9.40 10.59 7.49 0.08 -9.32 15 19 H 0.11 1.87 8.14 -2.39 -0.02 1.85 15 20 H 0.10 1.82 8.14 -2.39 -0.02 1.80 15 21 H 0.11 2.01 8.14 -2.39 -0.02 1.99 15 22 H 0.08 2.64 7.74 -2.38 -0.02 2.62 15 23 H 0.08 2.57 8.14 -2.39 -0.02 2.55 15 24 H 0.08 3.30 6.09 -2.39 -0.01 3.28 15 25 H 0.02 0.98 8.14 -2.38 -0.02 0.96 15 26 H 0.07 2.98 6.22 -2.39 -0.01 2.97 15 27 H 0.08 4.06 6.28 -2.39 -0.01 4.05 15 28 H 0.36 17.31 9.03 -74.06 -0.67 16.64 15 29 H 0.27 13.74 8.31 -92.70 -0.77 12.97 15 Total: -1.00 -64.27 248.84 1.60 -62.67 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.50 Total: 21.81 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 3.74 Total: -14.76 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -3.06 Total: -72.06 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -1.60 Total: -41.02 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.36 kcal Total: -64.27 1.60 -62.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259730995.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.779 kcal (2) G-P(sol) polarization free energy of solvation -64.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds