Wall clock time and date at job start Mon Mar 30 2020 02:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30251 * 125.62111 * 2 1 4 4 C 1.34476 * 108.69867 * 179.83751 * 3 2 1 5 5 C 1.50707 * 126.16604 * 180.16888 * 4 3 2 6 6 C 1.34324 * 107.67032 * 0.42409 * 4 3 2 7 7 C 1.50708 * 126.44599 * 179.71950 * 6 4 3 8 8 H 1.09000 * 109.47155 * 345.00656 * 7 6 4 9 9 O 1.42891 * 109.47178 * 225.00341 * 7 6 4 10 10 C 1.53000 * 109.46730 * 105.00305 * 7 6 4 11 11 C 1.50698 * 109.46768 * 185.00287 * 10 7 6 12 12 H 1.07997 * 120.00414 * 0.02562 * 11 10 7 13 13 C 1.37880 * 119.99921 * 179.97438 * 11 10 7 14 14 N 1.31522 * 119.99917 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00220 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47605 * 89.99807 * 15 13 11 17 17 H 1.48501 * 109.47347 * 210.00507 * 15 13 11 18 18 H 1.48503 * 109.47053 * 329.99990 * 15 13 11 19 19 O 1.33964 * 125.61467 * 180.30782 * 2 1 3 20 20 H 1.08999 * 109.47015 * 269.69408 * 1 2 3 21 21 H 1.09000 * 109.46646 * 29.68560 * 1 2 3 22 22 H 1.09000 * 109.47248 * 149.69278 * 1 2 3 23 23 H 1.08997 * 109.47298 * 270.30536 * 5 4 3 24 24 H 1.08999 * 109.46697 * 30.30436 * 5 4 3 25 25 H 1.09001 * 109.47022 * 150.30087 * 5 4 3 26 26 H 0.96699 * 114.00249 * 299.99984 * 9 7 6 27 27 H 1.08998 * 109.47441 * 304.99783 * 10 7 6 28 28 H 1.09000 * 109.47302 * 64.99982 * 10 7 6 29 29 H 0.96996 * 119.99640 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6674 0.0036 5 6 4.7572 1.5725 0.0085 6 6 3.5698 -0.6757 -0.0036 7 6 4.7937 -1.5551 -0.0089 8 1 5.6679 -0.9595 -0.2719 9 8 4.6243 -2.6015 -0.9671 10 6 4.9905 -2.1634 1.3812 11 6 6.2798 -2.9431 1.4103 12 1 6.8972 -2.9988 0.5260 13 6 6.6716 -3.5844 2.5662 14 7 5.9204 -3.5153 3.6436 15 14 8.2701 -4.5503 2.6026 16 1 9.3799 -3.6555 3.0181 17 1 8.1494 -5.6711 3.5693 18 1 8.5517 -5.0925 1.2490 19 8 2.2872 -1.0890 -0.0059 20 1 -0.3633 -0.0055 1.0276 21 1 -0.3632 0.8928 -0.5090 22 1 -0.3634 -0.8872 -0.5186 23 1 5.0477 1.7963 -1.0180 24 1 4.5131 2.4995 0.5274 25 1 5.5822 1.0763 0.5197 26 1 3.8633 -3.1728 -0.7952 27 1 5.0309 -1.3667 2.1240 28 1 4.1579 -2.8294 1.6076 29 1 6.1959 -3.9668 4.4566 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259791649.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:25 Heat of formation + Delta-G solvation = -73.581746 kcal Electronic energy + Delta-G solvation = -13886.248883 eV Core-core repulsion = 11388.504935 eV Total energy + Delta-G solvation = -2497.743948 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.36663 -38.50691 -36.20627 -35.04745 -33.86510 -31.64036 -30.18566 -28.36141 -25.72176 -23.33011 -22.67984 -21.58190 -19.02729 -17.95291 -17.81813 -16.95095 -16.38113 -16.30575 -15.34260 -14.91869 -14.38106 -14.21727 -13.99297 -13.85892 -13.45526 -13.25687 -13.11272 -12.84045 -12.65329 -12.53086 -12.18002 -11.89554 -11.75849 -11.35084 -10.94220 -10.62858 -9.49611 -8.23779 -6.35078 0.41195 1.41610 1.42563 1.54276 1.58174 1.69606 2.40442 3.07338 3.09489 3.50126 3.71604 3.89075 4.16956 4.43600 4.51817 4.62222 4.65148 4.71978 4.76466 4.89407 4.99461 5.14323 5.26661 5.43948 5.44827 5.71362 6.10562 6.62707 6.72307 6.79841 7.34242 8.88100 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.045045 B = 0.007696 C = 0.007432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.455249 B = 3637.591397 C = 3766.628902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.177 3.823 3 N -0.507 5.507 4 C -0.024 4.024 5 C -0.071 4.071 6 C -0.087 4.087 7 C 0.211 3.789 8 H 0.129 0.871 9 O -0.556 6.556 10 C 0.008 3.992 11 C -0.531 4.531 12 H 0.066 0.934 13 C 0.002 3.998 14 N -0.934 5.934 15 Si 0.968 3.032 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.264 1.264 19 O -0.212 6.212 20 H 0.106 0.894 21 H 0.117 0.883 22 H 0.107 0.893 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.382 0.618 27 H 0.004 0.996 28 H -0.004 1.004 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.416 6.362 -7.095 12.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.029 4.029 3 N -0.238 5.238 4 C -0.143 4.143 5 C -0.128 4.128 6 C -0.140 4.140 7 C 0.151 3.849 8 H 0.146 0.854 9 O -0.361 6.361 10 C -0.029 4.029 11 C -0.569 4.569 12 H 0.084 0.916 13 C -0.195 4.195 14 N -0.574 5.574 15 Si 0.793 3.207 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.188 1.188 19 O -0.100 6.100 20 H 0.125 0.875 21 H 0.135 0.865 22 H 0.125 0.875 23 H 0.110 0.890 24 H 0.102 0.898 25 H 0.096 0.904 26 H 0.230 0.770 27 H 0.022 0.978 28 H 0.015 0.985 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.140 7.149 -7.189 12.400 hybrid contribution 0.373 -1.444 0.786 1.686 sum -6.767 5.705 -6.403 10.924 Atomic orbital electron populations 1.20541 0.77575 1.06669 1.06060 1.27463 0.98308 0.78139 0.99002 1.70302 1.01769 1.31105 1.20626 1.21977 0.94407 0.92287 1.05673 1.20242 0.90961 0.97646 1.03975 1.24662 0.84378 0.96525 1.08429 1.20562 0.88470 0.85414 0.90434 0.85404 1.86447 1.53714 1.44499 1.51487 1.19622 0.96692 0.95195 0.91408 1.21418 1.06210 1.31599 0.97627 0.91591 1.25951 1.00985 0.97540 0.95070 1.70103 1.39896 1.44815 1.02560 0.85393 0.78996 0.78099 0.78249 1.19537 1.20883 1.18816 1.84342 1.16691 1.38603 1.70319 0.87524 0.86500 0.87463 0.89010 0.89751 0.90398 0.77001 0.97780 0.98536 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.94 10.51 71.24 0.75 -0.19 15 2 C 0.18 5.69 8.34 88.35 0.74 6.42 15 3 N -0.51 -18.10 11.29 -291.98 -3.30 -21.39 15 4 C -0.02 -0.91 7.11 41.26 0.29 -0.61 15 5 C -0.07 -2.09 10.00 71.24 0.71 -1.38 15 6 C -0.09 -3.49 6.24 24.79 0.15 -3.34 15 7 C 0.21 9.02 3.23 29.85 0.10 9.11 15 8 H 0.13 5.17 7.17 -2.39 -0.02 5.15 15 9 O -0.56 -23.14 13.08 -148.94 -1.95 -25.08 15 10 C 0.01 0.43 4.64 29.85 0.14 0.56 15 11 C -0.53 -29.69 8.88 25.60 0.23 -29.46 15 12 H 0.07 3.59 7.74 -2.91 -0.02 3.56 15 13 C 0.00 0.14 5.46 84.65 0.46 0.60 15 14 N -0.93 -56.24 13.29 21.45 0.28 -55.96 15 15 Si 0.97 43.88 29.54 68.60 2.03 45.91 15 16 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 15 18 H -0.26 -11.53 7.11 99.48 0.71 -10.82 15 19 O -0.21 -8.03 10.78 -3.67 -0.04 -8.07 15 20 H 0.11 1.65 8.14 -2.39 -0.02 1.63 15 21 H 0.12 1.68 8.14 -2.39 -0.02 1.66 15 22 H 0.11 1.52 8.14 -2.39 -0.02 1.50 15 23 H 0.09 2.30 8.14 -2.39 -0.02 2.28 15 24 H 0.08 2.25 8.14 -2.39 -0.02 2.23 15 25 H 0.08 2.31 7.44 -2.39 -0.02 2.29 15 26 H 0.38 14.06 9.04 -74.06 -0.67 13.39 15 27 H 0.00 0.22 8.14 -2.39 -0.02 0.20 15 28 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 15 29 H 0.26 14.97 8.31 -92.71 -0.77 14.20 15 Total: -1.00 -69.84 260.38 1.08 -68.76 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.49 Total: 14.12 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 3.57 Total: -18.28 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -3.01 Total: -77.35 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -1.99 Total: -33.15 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -69.84 1.08 -68.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259791649.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.821 kcal (2) G-P(sol) polarization free energy of solvation -69.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds