Wall clock time and date at job start Mon Mar 30 2020 02:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34482 * 126.16352 * 2 1 4 4 C 1.30259 * 108.69955 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.61665 * 180.02562 * 4 3 2 6 6 C 1.53007 * 109.46993 * 65.00494 * 5 4 3 7 7 O 1.42895 * 109.47456 * 305.00491 * 5 4 3 8 8 C 1.50700 * 109.46931 * 185.00161 * 5 4 3 9 9 H 1.08000 * 120.00147 * 0.02562 * 8 5 4 10 10 C 1.37878 * 119.99726 * 180.02562 * 8 5 4 11 11 N 1.31516 * 120.00364 * 359.97438 * 10 8 5 12 12 Si 1.86801 * 119.99839 * 180.02562 * 10 8 5 13 13 H 1.48506 * 109.47316 * 59.99843 * 12 10 8 14 14 H 1.48503 * 109.47156 * 179.97438 * 12 10 8 15 15 H 1.48493 * 109.47037 * 299.99824 * 12 10 8 16 16 O 1.33966 * 108.76366 * 359.73796 * 4 3 2 17 17 C 1.34329 * 126.17137 * 180.02562 * 2 1 3 18 18 C 1.50706 * 126.43925 * 359.97438 * 17 2 1 19 19 H 1.09000 * 109.46956 * 269.99765 * 1 2 3 20 20 H 1.08998 * 109.47037 * 30.00089 * 1 2 3 21 21 H 1.09007 * 109.46788 * 149.99569 * 1 2 3 22 22 H 1.09001 * 109.47331 * 59.99608 * 6 5 4 23 23 H 1.08998 * 109.47035 * 179.97438 * 6 5 4 24 24 H 1.09002 * 109.46823 * 300.00146 * 6 5 4 25 25 H 0.96698 * 114.00024 * 299.99950 * 7 5 4 26 26 H 0.96994 * 119.99893 * 180.02562 * 11 10 8 27 27 H 1.09001 * 109.46953 * 90.00182 * 18 17 2 28 28 H 1.09000 * 109.47318 * 209.99779 * 18 17 2 29 29 H 1.09000 * 109.47161 * 330.00410 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5431 0.6948 0.0006 5 6 4.7479 1.6001 0.0013 6 6 4.7889 2.3935 1.3089 7 8 4.6651 2.5042 -1.1021 8 6 5.9998 0.7702 -0.1221 9 1 5.9299 -0.3051 -0.1943 10 6 7.2343 1.3838 -0.1428 11 7 7.3194 2.6933 -0.0554 12 14 8.7861 0.3552 -0.2965 13 1 8.7464 -0.4140 -1.5662 14 1 9.9733 1.2472 -0.2956 15 1 8.8720 -0.5852 0.8495 16 8 3.5735 -0.6445 0.0067 17 6 2.2998 -1.0844 -0.0005 18 6 1.8494 -2.5226 -0.0006 19 1 -0.3633 0.0000 1.0277 20 1 -0.3633 0.8900 -0.5138 21 1 -0.3633 -0.8900 -0.5139 22 1 4.8520 1.7038 2.1506 23 1 5.6605 3.0479 1.3097 24 1 3.8833 2.9937 1.3982 25 1 4.6354 2.0696 -1.9654 26 1 8.1879 3.1249 -0.0704 27 1 1.7405 -2.8691 -1.0283 28 1 2.5903 -3.1354 0.5128 29 1 0.8916 -2.6034 0.5135 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259810784.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:03 Heat of formation + Delta-G solvation = -37.913712 kcal Electronic energy + Delta-G solvation = -14266.902483 eV Core-core repulsion = 11770.705218 eV Total energy + Delta-G solvation = -2496.197266 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.53226 -36.34345 -34.44851 -32.42398 -32.31768 -29.59374 -28.74650 -25.52881 -24.96727 -22.08279 -20.39030 -19.55716 -16.94770 -16.25538 -16.00902 -14.88314 -14.71349 -13.68351 -13.45647 -13.12237 -12.88006 -12.84519 -12.44254 -12.13829 -11.64414 -11.41193 -11.16874 -11.06435 -10.82451 -10.56486 -10.23388 -10.14470 -9.71913 -9.56528 -8.63375 -8.51525 -7.83252 -6.11525 -4.33407 2.15959 3.25215 3.30286 3.32972 3.40358 3.51325 4.28263 4.86746 5.12830 5.18640 5.31222 5.49731 5.58142 5.79021 5.83604 5.84976 6.00128 6.10618 6.63060 6.74741 6.83851 6.92718 7.07235 7.35339 7.65285 7.83129 8.00648 8.51381 8.77431 9.15395 9.42445 10.89058 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.042752 B = 0.010111 C = 0.008674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.780151 B = 2768.576009 C = 3227.208775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.027 4.027 3 N -0.494 5.494 4 C 0.211 3.789 5 C 0.342 3.658 6 C -0.116 4.116 7 O -0.536 6.536 8 C -0.570 4.570 9 H 0.066 0.934 10 C 0.085 3.915 11 N -0.854 5.854 12 Si 0.899 3.101 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.274 1.274 16 O -0.185 6.185 17 C -0.089 4.089 18 C -0.058 4.058 19 H 0.067 0.933 20 H 0.070 0.930 21 H 0.066 0.934 22 H 0.042 0.958 23 H 0.102 0.898 24 H 0.029 0.971 25 H 0.354 0.646 26 H 0.265 0.735 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.177 -7.101 0.191 10.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.147 4.147 3 N -0.224 5.224 4 C 0.004 3.996 5 C 0.301 3.699 6 C -0.174 4.174 7 O -0.338 6.338 8 C -0.608 4.608 9 H 0.084 0.916 10 C -0.122 4.122 11 N -0.489 5.489 12 Si 0.726 3.274 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.200 1.200 16 O -0.072 6.072 17 C -0.143 4.143 18 C -0.115 4.115 19 H 0.086 0.914 20 H 0.089 0.911 21 H 0.085 0.915 22 H 0.061 0.939 23 H 0.121 0.879 24 H 0.048 0.952 25 H 0.198 0.802 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.188 -5.862 0.688 10.093 hybrid contribution 0.981 -1.731 -0.522 2.057 sum -7.207 -7.593 0.166 10.470 Atomic orbital electron populations 1.19996 0.87558 1.02503 1.02033 1.21511 0.97480 0.88586 1.07107 1.70429 1.01075 1.30591 1.20341 1.28838 0.96535 0.78776 0.95497 1.17417 0.82109 0.83223 0.87200 1.21590 1.02398 0.99777 0.93586 1.86622 1.95857 1.35861 1.15459 1.21456 0.90348 0.93700 1.55315 0.91631 1.24953 0.99038 0.94913 0.93323 1.69979 1.24845 1.08042 1.46001 0.86553 0.81823 0.80055 0.78951 1.20005 1.20984 1.19970 1.84523 1.28511 1.25172 1.69010 1.23046 0.82417 0.97729 1.11094 1.20086 1.01203 0.87380 1.02831 0.91449 0.91053 0.91495 0.93882 0.87926 0.95150 0.80184 0.92514 0.90699 0.90850 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.05 36.00 0.36 -0.52 15 2 C -0.03 -0.52 7.11 -82.81 -0.59 -1.11 15 3 N -0.49 -11.56 11.29 -7.36 -0.08 -11.65 15 4 C 0.21 5.19 6.80 -12.94 -0.09 5.10 15 5 C 0.34 8.97 0.95 -92.92 -0.09 8.89 15 6 C -0.12 -2.95 8.60 37.16 0.32 -2.63 15 7 O -0.54 -14.20 12.36 -35.23 -0.44 -14.63 15 8 C -0.57 -15.60 8.13 -34.44 -0.28 -15.88 15 9 H 0.07 1.80 6.97 -52.49 -0.37 1.44 15 10 C 0.08 2.28 5.24 -17.82 -0.09 2.19 15 11 N -0.85 -23.73 10.87 55.43 0.60 -23.13 15 12 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 15 13 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 16 O -0.19 -4.31 9.68 5.36 0.05 -4.26 15 17 C -0.09 -1.68 7.39 -35.68 -0.26 -1.95 15 18 C -0.06 -0.74 10.04 36.01 0.36 -0.38 15 19 H 0.07 0.84 8.14 -51.93 -0.42 0.41 15 20 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 21 H 0.07 0.73 7.79 -51.93 -0.40 0.33 15 22 H 0.04 1.04 8.14 -51.93 -0.42 0.62 15 23 H 0.10 2.77 6.07 -51.93 -0.32 2.46 15 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 25 H 0.35 8.40 9.03 45.56 0.41 8.81 15 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 15 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 29 H 0.08 0.83 7.80 -51.93 -0.40 0.42 15 LS Contribution 254.19 15.07 3.83 3.83 Total: -1.00 -31.18 254.19 -4.16 -35.34 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -2.75 Total: 5.11 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -0.36 Total: -6.29 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.52 Total: -34.77 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.38 Total: -18.89 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.18 -4.16 -35.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259810784.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.572 kcal (2) G-P(sol) polarization free energy of solvation -31.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds