Wall clock time and date at job start Mon Mar 30 2020 02:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47292 * 2 1 4 4 C 1.50699 * 109.47351 * 119.99483 * 2 1 3 5 5 H 1.08003 * 120.00206 * 119.99474 * 4 2 1 6 6 C 1.37877 * 119.99986 * 300.00583 * 4 2 1 7 7 N 1.31513 * 120.00191 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00080 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47221 * 89.99869 * 8 6 4 10 10 H 1.48496 * 109.47332 * 209.99492 * 8 6 4 11 11 H 1.48503 * 109.47303 * 329.99895 * 8 6 4 12 12 C 1.53004 * 109.47383 * 239.99749 * 2 1 3 13 13 H 1.09001 * 109.51858 * 299.87603 * 12 2 1 14 14 C 1.53241 * 109.52237 * 60.00170 * 12 2 1 15 15 C 1.53239 * 108.56680 * 175.52452 * 14 12 2 16 16 C 1.50590 * 109.15820 * 304.38230 * 15 14 12 17 17 O 1.21233 * 119.35608 * 209.07180 * 16 15 14 18 18 N 1.34138 * 121.28145 * 29.35424 * 16 15 14 19 19 C 1.34148 * 122.58404 * 358.91936 * 18 16 15 20 20 O 1.21221 * 119.36191 * 180.84673 * 19 18 16 21 21 H 1.09001 * 109.47292 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47185 * 300.00501 * 1 2 3 23 23 H 1.09004 * 109.46924 * 60.00542 * 1 2 3 24 24 H 0.97002 * 120.00446 * 180.02562 * 7 6 4 25 25 H 1.08994 * 109.62537 * 55.79515 * 14 12 2 26 26 H 1.09004 * 109.61881 * 295.24679 * 14 12 2 27 27 H 1.09003 * 109.52192 * 184.47734 * 15 14 12 28 28 H 1.08998 * 109.57757 * 64.32179 * 15 14 12 29 29 H 0.97001 * 118.70905 * 179.17785 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9434 0.8303 2.6034 8 14 2.3213 -1.1200 4.0080 9 1 3.6297 -0.5455 4.4125 10 1 1.3431 -0.9489 5.1121 11 1 2.4859 -2.5659 3.7122 12 6 2.0400 -0.7213 -1.2492 13 1 1.6790 -1.7498 -1.2489 14 6 1.5299 0.0001 -2.5013 15 6 2.1432 -0.6708 -3.7349 16 6 3.6435 -0.6675 -3.6048 17 8 4.3268 -0.6402 -4.6058 18 7 4.2385 -0.6997 -2.4030 19 6 3.5459 -0.7152 -1.2542 20 8 4.1439 -0.7288 -0.1998 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 0.7093 1.1620 3.4843 25 1 1.8291 1.0477 -2.4676 26 1 0.4433 -0.0716 -2.5478 27 1 1.8540 -0.1207 -4.6304 28 1 1.7862 -1.6981 -3.8074 29 1 5.2076 -0.7085 -2.3629 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260425923.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:06 Heat of formation + Delta-G solvation = -85.316427 kcal Electronic energy + Delta-G solvation = -14353.686997 eV Core-core repulsion = 11855.434196 eV Total energy + Delta-G solvation = -2498.252802 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.98879 -38.42172 -35.70408 -34.48432 -32.64766 -30.49718 -26.98556 -25.32858 -23.26146 -22.66457 -20.26770 -18.56658 -17.20826 -16.73104 -16.06273 -15.62006 -14.57645 -14.46766 -14.06172 -13.94083 -13.37929 -12.76704 -12.46825 -11.81183 -11.68158 -11.16041 -10.82959 -10.78734 -10.56398 -10.29270 -10.18800 -9.95945 -9.74610 -9.58428 -9.18324 -8.66734 -8.25806 -5.91174 -3.91740 1.97061 3.20881 3.33729 3.38603 3.44449 3.48601 4.43599 4.52909 4.98277 5.06425 5.07740 5.41925 5.54328 5.77203 5.82632 6.08354 6.38265 6.39778 6.45637 6.80296 6.97185 7.17089 7.34820 7.71532 7.77413 7.89891 8.15298 8.42361 8.46139 9.08047 9.70057 11.16008 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.048425 B = 0.009766 C = 0.008476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.075826 B = 2866.506499 C = 3302.562149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.059 3.941 3 H 0.030 0.970 4 C -0.488 4.488 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.892 3.108 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.276 1.276 12 C -0.098 4.098 13 H 0.102 0.898 14 C -0.123 4.123 15 C -0.143 4.143 16 C 0.528 3.472 17 O -0.530 6.530 18 N -0.682 5.682 19 C 0.512 3.488 20 O -0.456 6.456 21 H 0.028 0.972 22 H 0.087 0.913 23 H 0.012 0.988 24 H 0.257 0.743 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.422 -2.412 -9.824 10.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.040 3.960 3 H 0.048 0.952 4 C -0.526 4.526 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.540 5.540 8 Si 0.721 3.279 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.201 1.201 12 C -0.119 4.119 13 H 0.120 0.880 14 C -0.160 4.160 15 C -0.182 4.182 16 C 0.318 3.682 17 O -0.406 6.406 18 N -0.348 5.348 19 C 0.301 3.699 20 O -0.323 6.323 21 H 0.047 0.953 22 H 0.106 0.894 23 H 0.031 0.969 24 H 0.067 0.933 25 H 0.091 0.909 26 H 0.112 0.888 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -0.066 -2.301 -9.589 9.861 hybrid contribution 0.857 -0.428 0.905 1.318 sum 0.791 -2.729 -8.684 9.137 Atomic orbital electron populations 1.21861 0.97760 0.99315 1.00647 1.18641 0.92885 0.95549 0.88924 0.95229 1.21173 1.29170 1.12386 0.89860 0.91880 1.24888 0.95315 0.95198 0.98916 1.69870 1.37666 1.23364 1.23097 0.86586 0.78449 0.80047 0.82808 1.20914 1.21595 1.20116 1.21725 0.88319 1.02991 0.98833 0.88037 1.21918 1.02416 1.00073 0.91632 1.21960 0.89833 1.04671 1.01777 1.21023 0.92084 0.72934 0.82207 1.90725 1.66479 1.47083 1.36330 1.45233 1.12464 1.68957 1.08121 1.21426 0.92033 0.74386 0.82105 1.90836 1.70653 1.41308 1.29471 0.95281 0.89448 0.96888 0.93276 0.90883 0.88842 0.87659 0.87555 0.76014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.62 37.16 0.32 -2.65 15 2 C 0.06 1.35 1.81 -91.77 -0.17 1.19 15 3 H 0.03 0.76 8.14 -51.93 -0.42 0.34 15 4 C -0.49 -13.08 6.94 -34.44 -0.24 -13.32 15 5 H 0.06 1.73 6.54 -52.48 -0.34 1.39 15 6 C 0.06 1.56 5.30 -17.82 -0.09 1.47 15 7 N -0.90 -25.53 11.32 55.43 0.63 -24.91 15 8 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 15 9 H -0.28 -7.07 7.11 56.52 0.40 -6.67 15 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 12 C -0.10 -1.74 1.99 -91.70 -0.18 -1.92 15 13 H 0.10 1.71 8.14 -51.93 -0.42 1.29 15 14 C -0.12 -1.66 4.87 -26.48 -0.13 -1.79 15 15 C -0.14 -1.63 6.07 -27.81 -0.17 -1.80 15 16 C 0.53 7.70 7.74 -11.32 -0.09 7.61 15 17 O -0.53 -9.03 17.88 5.60 0.10 -8.93 15 18 N -0.68 -10.61 5.09 -11.75 -0.06 -10.67 15 19 C 0.51 9.64 7.40 -11.32 -0.08 9.55 15 20 O -0.46 -10.58 14.58 5.61 0.08 -10.50 15 21 H 0.03 0.59 8.14 -51.93 -0.42 0.17 15 22 H 0.09 2.18 6.07 -51.93 -0.32 1.86 15 23 H 0.01 0.22 6.54 -51.93 -0.34 -0.12 15 24 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 26 H 0.09 1.14 6.71 -51.93 -0.35 0.79 15 27 H 0.11 1.02 8.14 -51.93 -0.42 0.59 15 28 H 0.11 1.02 8.14 -51.93 -0.42 0.59 15 29 H 0.40 5.82 8.79 -40.82 -0.36 5.47 15 LS Contribution 242.29 15.07 3.65 3.65 Total: -1.00 -31.17 242.29 -4.83 -36.00 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -3.38 Total: 0.08 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -0.83 Total: -1.67 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.57 Total: -35.58 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: 0.18 Total: -19.43 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -31.17 -4.83 -36.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260425923.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.316 kcal (2) G-P(sol) polarization free energy of solvation -31.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds