Wall clock time and date at job start Mon Mar 30 2020 02:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47292 * 2 1 4 4 C 1.50699 * 109.47351 * 119.99483 * 2 1 3 5 5 H 1.08003 * 120.00206 * 119.99474 * 4 2 1 6 6 C 1.37877 * 119.99986 * 300.00583 * 4 2 1 7 7 N 1.31513 * 120.00191 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00080 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47221 * 89.99869 * 8 6 4 10 10 H 1.48496 * 109.47332 * 209.99492 * 8 6 4 11 11 H 1.48503 * 109.47303 * 329.99895 * 8 6 4 12 12 C 1.53004 * 109.47383 * 239.99749 * 2 1 3 13 13 H 1.09001 * 109.51858 * 299.87603 * 12 2 1 14 14 C 1.53241 * 109.52237 * 60.00170 * 12 2 1 15 15 C 1.53239 * 108.56680 * 175.52452 * 14 12 2 16 16 C 1.50590 * 109.15820 * 304.38230 * 15 14 12 17 17 O 1.21233 * 119.35608 * 209.07180 * 16 15 14 18 18 N 1.34138 * 121.28145 * 29.35424 * 16 15 14 19 19 C 1.34148 * 122.58404 * 358.91936 * 18 16 15 20 20 O 1.21221 * 119.36191 * 180.84673 * 19 18 16 21 21 H 1.09001 * 109.47292 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47185 * 300.00501 * 1 2 3 23 23 H 1.09004 * 109.46924 * 60.00542 * 1 2 3 24 24 H 0.97002 * 120.00446 * 180.02562 * 7 6 4 25 25 H 1.08994 * 109.62537 * 55.79515 * 14 12 2 26 26 H 1.09004 * 109.61881 * 295.24679 * 14 12 2 27 27 H 1.09003 * 109.52192 * 184.47734 * 15 14 12 28 28 H 1.08998 * 109.57757 * 64.32179 * 15 14 12 29 29 H 0.97001 * 118.70905 * 179.17785 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9434 0.8303 2.6034 8 14 2.3213 -1.1200 4.0080 9 1 3.6297 -0.5455 4.4125 10 1 1.3431 -0.9489 5.1121 11 1 2.4859 -2.5659 3.7122 12 6 2.0400 -0.7213 -1.2492 13 1 1.6790 -1.7498 -1.2489 14 6 1.5299 0.0001 -2.5013 15 6 2.1432 -0.6708 -3.7349 16 6 3.6435 -0.6675 -3.6048 17 8 4.3268 -0.6402 -4.6058 18 7 4.2385 -0.6997 -2.4030 19 6 3.5459 -0.7152 -1.2542 20 8 4.1439 -0.7288 -0.1998 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 0.7093 1.1620 3.4843 25 1 1.8291 1.0477 -2.4676 26 1 0.4433 -0.0716 -2.5478 27 1 1.8540 -0.1207 -4.6304 28 1 1.7862 -1.6981 -3.8074 29 1 5.2076 -0.7085 -2.3629 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260425923.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:06 Heat of formation + Delta-G solvation = -107.866251 kcal Electronic energy + Delta-G solvation = -14354.664831 eV Core-core repulsion = 11855.434196 eV Total energy + Delta-G solvation = -2499.230635 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.32638 -39.84177 -37.23997 -35.98430 -34.29938 -32.09893 -28.45910 -27.22961 -24.60297 -24.03231 -21.90357 -19.88272 -18.62582 -18.34149 -17.72124 -16.96250 -16.51749 -15.81638 -15.43551 -15.30963 -14.88550 -14.47668 -13.84714 -13.34446 -13.03992 -12.94541 -12.64018 -12.45574 -12.13777 -12.06559 -11.89682 -11.26077 -11.17699 -11.14649 -10.91987 -10.51726 -10.30784 -7.99959 -6.04404 0.67240 1.40026 1.43152 1.51130 1.93746 1.99693 2.50127 3.22410 3.31053 3.83791 3.90937 4.00160 4.40422 4.62933 4.76489 4.93909 4.94920 5.10226 5.21966 5.25831 5.35064 5.40053 5.75434 5.96534 6.03404 6.26784 6.47070 6.53002 6.99252 7.06645 7.58864 9.05149 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.048425 B = 0.009766 C = 0.008476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.075826 B = 2866.506499 C = 3302.562149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.055 3.945 3 H -0.006 1.006 4 C -0.493 4.493 5 H 0.051 0.949 6 C 0.006 3.994 7 N -0.923 5.923 8 Si 0.939 3.061 9 H -0.291 1.291 10 H -0.283 1.283 11 H -0.271 1.271 12 C -0.095 4.095 13 H 0.119 0.881 14 C -0.113 4.113 15 C -0.130 4.130 16 C 0.529 3.471 17 O -0.552 6.552 18 N -0.677 5.677 19 C 0.519 3.481 20 O -0.512 6.512 21 H 0.037 0.963 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.255 0.745 25 H 0.066 0.934 26 H 0.119 0.881 27 H 0.135 0.865 28 H 0.137 0.863 29 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.386 -3.187 -11.719 12.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.036 3.964 3 H 0.012 0.988 4 C -0.531 4.531 5 H 0.069 0.931 6 C -0.190 4.190 7 N -0.565 5.565 8 Si 0.767 3.233 9 H -0.218 1.218 10 H -0.208 1.208 11 H -0.196 1.196 12 C -0.116 4.116 13 H 0.136 0.864 14 C -0.150 4.150 15 C -0.169 4.169 16 C 0.321 3.679 17 O -0.429 6.429 18 N -0.341 5.341 19 C 0.309 3.691 20 O -0.383 6.383 21 H 0.056 0.944 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.085 0.915 26 H 0.137 0.863 27 H 0.153 0.847 28 H 0.155 0.845 29 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -1.037 -3.084 -11.523 11.974 hybrid contribution 1.215 -0.180 1.432 1.887 sum 0.178 -3.265 -10.091 10.607 Atomic orbital electron populations 1.21680 0.96316 0.99860 1.00739 1.18548 0.94021 0.93666 0.90125 0.98797 1.21525 1.28074 1.11939 0.91582 0.93111 1.25533 0.96030 0.96088 1.01356 1.69989 1.38826 1.24424 1.23246 0.85846 0.77584 0.79342 0.80526 1.21784 1.20834 1.19558 1.21621 0.87498 1.03820 0.98643 0.86370 1.21862 1.03863 0.99250 0.90069 1.22043 0.86518 1.06749 1.01595 1.21700 0.93519 0.71635 0.81049 1.90731 1.67402 1.48028 1.36705 1.45121 1.12704 1.68364 1.07918 1.21643 0.92593 0.72887 0.81972 1.90814 1.71672 1.44218 1.31602 0.94358 0.93130 0.93021 0.93552 0.91516 0.86318 0.84729 0.84518 0.75729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.32 8.62 71.98 0.62 -4.70 15 2 C 0.06 2.52 1.81 -11.54 -0.02 2.50 15 3 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 15 4 C -0.49 -26.70 6.94 25.60 0.18 -26.53 15 5 H 0.05 2.83 6.54 -2.91 -0.02 2.81 15 6 C 0.01 0.36 5.30 84.65 0.45 0.81 15 7 N -0.92 -53.39 11.32 21.45 0.24 -53.14 15 8 Si 0.94 45.64 29.54 68.60 2.03 47.67 15 9 H -0.29 -14.41 7.11 99.48 0.71 -13.71 15 10 H -0.28 -13.28 7.11 99.48 0.71 -12.57 15 11 H -0.27 -12.79 7.11 99.48 0.71 -12.08 15 12 C -0.09 -3.19 1.99 -11.49 -0.02 -3.21 15 13 H 0.12 3.62 8.14 -2.39 -0.02 3.60 15 14 C -0.11 -2.61 4.87 30.75 0.15 -2.46 15 15 C -0.13 -2.34 6.07 29.89 0.18 -2.16 15 16 C 0.53 13.87 7.74 87.72 0.68 14.55 15 17 O -0.55 -17.33 17.88 -2.88 -0.05 -17.38 15 18 N -0.68 -20.12 5.09 -428.62 -2.18 -22.30 15 19 C 0.52 19.18 7.40 87.72 0.65 19.82 15 20 O -0.51 -24.23 14.58 -2.85 -0.04 -24.28 15 21 H 0.04 1.48 8.14 -2.39 -0.02 1.46 15 22 H 0.05 2.50 6.07 -2.39 -0.01 2.48 15 23 H 0.05 1.70 6.54 -2.38 -0.02 1.68 15 24 H 0.26 14.25 8.31 -92.71 -0.77 13.48 15 25 H 0.07 1.66 8.14 -2.39 -0.02 1.64 15 26 H 0.12 2.23 6.71 -2.38 -0.02 2.21 15 27 H 0.13 1.80 8.14 -2.39 -0.02 1.78 15 28 H 0.14 1.78 8.14 -2.39 -0.02 1.76 15 29 H 0.40 11.50 8.79 -92.71 -0.81 10.68 15 Total: -1.00 -69.12 242.29 3.21 -65.91 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 0.35 Total: 4.89 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 2.86 Total: -1.36 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -1.94 Total: -75.45 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -0.09 Total: -41.66 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -69.12 3.21 -65.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260425923.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.958 kcal (2) G-P(sol) polarization free energy of solvation -69.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds