Wall clock time and date at job start Mon Mar 30 2020 02:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47416 * 2 1 4 4 C 1.50706 * 109.47354 * 119.99891 * 2 1 3 5 5 N 1.34404 * 126.46812 * 299.95905 * 4 2 1 6 6 H 0.96998 * 124.10402 * 0.02562 * 5 4 2 7 7 O 1.20961 * 111.79505 * 180.02562 * 5 4 2 8 8 C 1.34198 * 110.91049 * 359.73985 * 7 5 4 9 9 O 1.22008 * 126.98793 * 180.25946 * 8 7 5 10 10 C 1.36072 * 126.46198 * 119.99825 * 4 2 1 11 11 C 1.50703 * 127.90397 * 359.94645 * 10 4 2 12 12 C 1.50701 * 109.47064 * 89.99742 * 11 10 4 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 H 1.09006 * 109.46724 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46831 * 299.99611 * 1 2 3 22 22 H 1.08997 * 109.46942 * 60.00121 * 1 2 3 23 23 H 1.09008 * 109.47375 * 239.99787 * 2 1 3 24 24 H 1.08997 * 109.47650 * 179.97438 * 3 2 1 25 25 H 1.09004 * 109.46681 * 300.00493 * 3 2 1 26 26 H 1.09003 * 109.46557 * 59.99670 * 3 2 1 27 27 H 1.09002 * 109.47152 * 329.99835 * 11 10 4 28 28 H 1.09001 * 109.46980 * 209.99935 * 11 10 4 29 29 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7898 -0.3659 2.5068 6 1 1.2513 0.3961 2.7715 7 8 2.3246 -1.1216 3.2853 8 6 2.9970 -2.0833 2.6342 9 8 3.6358 -2.9968 3.1302 10 6 2.8178 -1.8212 1.2589 11 6 3.3656 -2.5979 0.0894 12 6 4.7083 -2.0365 -0.3018 13 1 5.1236 -1.2011 0.2422 14 6 5.4070 -2.5901 -1.3537 15 7 4.9014 -3.6077 -2.0159 16 14 7.0716 -1.8946 -1.8382 17 1 8.0068 -2.0032 -0.6898 18 1 7.6113 -2.6599 -2.9907 19 1 6.9198 -0.4675 -2.2198 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 2.6789 -2.5183 -0.7533 28 1 3.4773 -3.6455 0.3693 29 1 5.3928 -3.9969 -2.7562 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260980848.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:46 Heat of formation + Delta-G solvation = 7.427038 kcal Electronic energy + Delta-G solvation = -14195.295729 eV Core-core repulsion = 11701.064586 eV Total energy + Delta-G solvation = -2494.231143 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.35314 -37.16736 -36.54129 -33.34710 -31.93133 -30.87224 -27.72852 -27.12661 -23.65335 -23.19871 -21.12760 -19.59047 -18.17126 -17.42070 -16.10212 -15.67561 -14.88575 -14.46018 -14.17389 -13.68697 -13.27258 -12.63570 -12.39497 -12.25847 -11.97553 -11.44463 -11.22752 -11.20006 -10.85106 -10.70621 -10.50257 -10.01420 -9.70740 -9.31948 -9.23431 -8.31594 -7.18408 -5.93250 -3.96313 1.93002 2.70748 3.36920 3.41683 3.44359 3.60127 4.11358 4.52626 4.77634 4.98100 5.20348 5.39593 5.51290 5.57477 5.73152 5.79563 5.86192 6.08935 6.12964 6.33879 6.45935 6.95541 7.27076 7.61560 7.80748 8.01787 8.35362 8.46886 8.54477 9.06612 9.66167 11.15809 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.027700 B = 0.011156 C = 0.009262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.588219 B = 2509.348000 C = 3022.328282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.033 4.033 3 C -0.145 4.145 4 C 0.114 3.886 5 N -0.520 5.520 6 H 0.451 0.549 7 O -0.083 6.083 8 C 0.455 3.545 9 O -0.487 6.487 10 C -0.265 4.265 11 C 0.104 3.896 12 C -0.506 4.506 13 H 0.052 0.948 14 C 0.058 3.942 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.278 1.278 20 H 0.062 0.938 21 H 0.049 0.951 22 H 0.066 0.934 23 H 0.117 0.883 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.047 0.953 27 H 0.030 0.970 28 H 0.032 0.968 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.832 10.774 3.169 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.053 4.053 3 C -0.203 4.203 4 C 0.003 3.997 5 N -0.184 5.184 6 H 0.299 0.701 7 O -0.105 6.105 8 C 0.307 3.693 9 O -0.377 6.377 10 C -0.276 4.276 11 C 0.066 3.934 12 C -0.544 4.544 13 H 0.071 0.929 14 C -0.143 4.143 15 N -0.535 5.535 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 H 0.081 0.919 21 H 0.068 0.932 22 H 0.085 0.915 23 H 0.135 0.865 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.527 10.268 3.610 14.465 hybrid contribution 0.816 0.636 -0.047 1.036 sum -8.711 10.904 3.563 14.404 Atomic orbital electron populations 1.21875 0.94161 1.02592 1.01782 1.19941 0.95342 0.95924 0.94063 1.21834 1.02629 0.94295 1.01500 1.21362 0.96599 0.95738 0.85961 1.40452 1.50552 1.26635 1.00773 0.70084 1.84487 1.59740 1.36616 1.29675 1.20033 0.80188 0.81124 0.87912 1.91008 1.41275 1.29096 1.76295 1.21890 1.07547 1.01591 0.96558 1.17451 0.94799 0.94168 0.86934 1.21072 1.02972 1.15972 1.14422 0.92936 1.24974 0.97811 0.95042 0.96457 1.69938 1.38526 1.23483 1.21560 0.86655 0.84483 0.78891 0.77978 1.20242 1.21264 1.20324 0.91860 0.93229 0.91527 0.86462 0.91336 0.91607 0.93409 0.95214 0.94976 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.18 37.16 0.34 -1.18 15 2 C -0.03 -0.46 3.31 -91.77 -0.30 -0.76 15 3 C -0.15 -1.66 9.18 37.16 0.34 -1.32 15 4 C 0.11 1.93 5.74 -82.24 -0.47 1.46 15 5 N -0.52 -7.48 6.70 33.48 0.22 -7.26 15 6 H 0.45 4.24 8.96 -40.82 -0.37 3.87 15 7 O -0.08 -1.50 11.25 -7.39 -0.08 -1.59 15 8 C 0.45 10.53 8.65 31.83 0.28 10.81 15 9 O -0.49 -13.09 18.07 -19.22 -0.35 -13.44 15 10 C -0.26 -5.96 5.51 -104.30 -0.58 -6.53 15 11 C 0.10 2.77 5.23 -29.03 -0.15 2.61 15 12 C -0.51 -14.50 9.09 -34.44 -0.31 -14.81 15 13 H 0.05 1.50 7.74 -52.49 -0.41 1.09 15 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 15 15 N -0.90 -26.83 13.29 55.43 0.74 -26.09 15 16 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 15 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 15 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 20 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 21 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 15 22 H 0.07 0.59 8.14 -51.93 -0.42 0.16 15 23 H 0.12 1.90 7.07 -51.92 -0.37 1.53 15 24 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 15 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 15 27 H 0.03 0.78 7.38 -51.93 -0.38 0.40 15 28 H 0.03 0.95 8.14 -51.93 -0.42 0.53 15 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 LS Contribution 257.98 15.07 3.89 3.89 Total: -1.00 -34.06 257.98 -5.18 -39.23 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: -3.62 Total: -3.50 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -0.96 Total: -8.15 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.96 Total: -33.35 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.43 Total: -15.03 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -34.06 -5.18 -39.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260980848.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.660 kcal (2) G-P(sol) polarization free energy of solvation -34.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds