Wall clock time and date at job start Mon Mar 30 2020 02:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47416 * 2 1 4 4 C 1.50706 * 109.47354 * 119.99891 * 2 1 3 5 5 N 1.34404 * 126.46812 * 299.95905 * 4 2 1 6 6 H 0.96998 * 124.10402 * 0.02562 * 5 4 2 7 7 O 1.20961 * 111.79505 * 180.02562 * 5 4 2 8 8 C 1.34198 * 110.91049 * 359.73985 * 7 5 4 9 9 O 1.22008 * 126.98793 * 180.25946 * 8 7 5 10 10 C 1.36072 * 126.46198 * 119.99825 * 4 2 1 11 11 C 1.50703 * 127.90397 * 359.94645 * 10 4 2 12 12 C 1.50701 * 109.47064 * 89.99742 * 11 10 4 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 H 1.09006 * 109.46724 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46831 * 299.99611 * 1 2 3 22 22 H 1.08997 * 109.46942 * 60.00121 * 1 2 3 23 23 H 1.09008 * 109.47375 * 239.99787 * 2 1 3 24 24 H 1.08997 * 109.47650 * 179.97438 * 3 2 1 25 25 H 1.09004 * 109.46681 * 300.00493 * 3 2 1 26 26 H 1.09003 * 109.46557 * 59.99670 * 3 2 1 27 27 H 1.09002 * 109.47152 * 329.99835 * 11 10 4 28 28 H 1.09001 * 109.46980 * 209.99935 * 11 10 4 29 29 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7898 -0.3659 2.5068 6 1 1.2513 0.3961 2.7715 7 8 2.3246 -1.1216 3.2853 8 6 2.9970 -2.0833 2.6342 9 8 3.6358 -2.9968 3.1302 10 6 2.8178 -1.8212 1.2589 11 6 3.3656 -2.5979 0.0894 12 6 4.7083 -2.0365 -0.3018 13 1 5.1236 -1.2011 0.2422 14 6 5.4070 -2.5901 -1.3537 15 7 4.9014 -3.6077 -2.0159 16 14 7.0716 -1.8946 -1.8382 17 1 8.0068 -2.0032 -0.6898 18 1 7.6113 -2.6599 -2.9907 19 1 6.9198 -0.4675 -2.2198 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 2.6789 -2.5183 -0.7533 28 1 3.4773 -3.6455 0.3693 29 1 5.3928 -3.9969 -2.7562 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260980848.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:46 Heat of formation + Delta-G solvation = -15.210881 kcal Electronic energy + Delta-G solvation = -14196.277383 eV Core-core repulsion = 11701.064586 eV Total energy + Delta-G solvation = -2495.212797 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.94331 -38.98031 -37.88317 -35.33227 -33.55519 -32.55129 -29.74101 -27.98764 -25.67403 -24.54309 -22.84512 -21.07642 -19.63415 -19.07812 -18.30241 -17.24736 -16.53861 -16.43059 -15.48661 -14.90459 -14.52077 -14.43351 -14.25415 -13.89192 -13.38136 -13.02225 -12.71416 -12.60515 -12.43624 -12.24113 -11.89522 -11.75580 -11.64678 -11.13097 -11.08646 -10.53483 -8.93431 -8.11830 -6.25851 0.34699 1.25488 1.39597 1.44540 1.51600 1.80720 2.40958 2.46625 3.16048 3.49074 3.90391 4.11273 4.21078 4.49826 4.53996 4.81517 4.98890 4.99851 5.11644 5.23398 5.35273 5.42184 5.44503 5.63693 5.78808 5.94371 6.26082 6.63696 6.84159 6.89634 7.41340 8.95453 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.027700 B = 0.011156 C = 0.009262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.588219 B = 2509.348000 C = 3022.328282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.037 4.037 3 C -0.142 4.142 4 C 0.176 3.824 5 N -0.480 5.480 6 H 0.481 0.519 7 O -0.065 6.065 8 C 0.442 3.558 9 O -0.547 6.547 10 C -0.336 4.336 11 C 0.120 3.880 12 C -0.524 4.524 13 H 0.048 0.952 14 C 0.004 3.996 15 N -0.931 5.931 16 Si 0.961 3.039 17 H -0.280 1.280 18 H -0.279 1.279 19 H -0.257 1.257 20 H 0.050 0.950 21 H 0.081 0.919 22 H 0.090 0.910 23 H 0.087 0.913 24 H 0.042 0.958 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.023 0.977 28 H -0.019 1.019 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.083 14.187 3.061 18.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.057 4.057 3 C -0.200 4.200 4 C 0.059 3.941 5 N -0.144 5.144 6 H 0.336 0.664 7 O -0.088 6.088 8 C 0.298 3.702 9 O -0.442 6.442 10 C -0.346 4.346 11 C 0.082 3.918 12 C -0.562 4.562 13 H 0.067 0.933 14 C -0.194 4.194 15 N -0.571 5.571 16 Si 0.785 3.215 17 H -0.205 1.205 18 H -0.204 1.204 19 H -0.182 1.182 20 H 0.069 0.931 21 H 0.100 0.900 22 H 0.109 0.891 23 H 0.105 0.895 24 H 0.061 0.939 25 H 0.109 0.891 26 H 0.100 0.900 27 H 0.041 0.959 28 H -0.001 1.001 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.838 13.760 3.540 17.869 hybrid contribution 1.039 -0.289 -0.012 1.078 sum -9.799 13.471 3.528 17.027 Atomic orbital electron populations 1.21888 0.90620 1.02748 1.04646 1.20165 0.98082 0.96766 0.90651 1.21862 1.01067 0.92510 1.04531 1.21734 0.91966 0.92702 0.87740 1.40805 1.48121 1.25744 0.99720 0.66377 1.84481 1.58949 1.35938 1.29418 1.19987 0.80651 0.81485 0.88102 1.90951 1.44446 1.31697 1.77082 1.21320 1.12912 1.05228 0.95185 1.16999 0.94510 0.91903 0.88363 1.21394 1.04155 1.16053 1.14587 0.93320 1.25892 1.01869 0.95277 0.96331 1.70069 1.40253 1.24692 1.22063 0.85567 0.79159 0.79204 0.77525 1.20521 1.20397 1.18160 0.93129 0.90040 0.89134 0.89475 0.93874 0.89114 0.90029 0.95920 1.00105 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.18 71.98 0.66 -1.65 15 2 C -0.04 -0.91 3.31 -11.54 -0.04 -0.95 15 3 C -0.14 -2.66 9.18 71.98 0.66 -1.99 15 4 C 0.18 5.62 5.74 41.66 0.24 5.86 15 5 N -0.48 -12.15 6.70 -48.08 -0.32 -12.47 15 6 H 0.48 6.27 8.96 -92.71 -0.83 5.44 15 7 O -0.07 -2.27 11.25 93.15 1.05 -1.22 15 8 C 0.44 21.06 8.65 68.53 0.59 21.65 15 9 O -0.55 -31.16 18.07 17.73 0.32 -30.84 15 10 C -0.34 -15.57 5.51 -19.65 -0.11 -15.68 15 11 C 0.12 6.78 5.23 29.10 0.15 6.94 15 12 C -0.52 -31.18 9.09 25.60 0.23 -30.95 15 13 H 0.05 2.85 7.74 -2.91 -0.02 2.83 15 14 C 0.00 0.24 5.46 84.66 0.46 0.70 15 15 N -0.93 -57.61 13.29 21.45 0.28 -57.32 15 16 Si 0.96 45.48 29.54 68.60 2.03 47.50 15 17 H -0.28 -13.28 7.11 99.48 0.71 -12.57 15 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 19 H -0.26 -11.26 7.11 99.48 0.71 -10.55 15 20 H 0.05 0.98 8.14 -2.38 -0.02 0.96 15 21 H 0.08 0.84 8.14 -2.39 -0.02 0.82 15 22 H 0.09 1.14 8.14 -2.39 -0.02 1.12 15 23 H 0.09 2.77 7.07 -2.38 -0.02 2.75 15 24 H 0.04 1.04 8.14 -2.39 -0.02 1.02 15 25 H 0.09 1.32 8.14 -2.39 -0.02 1.30 15 26 H 0.08 0.98 8.14 -2.39 -0.02 0.96 15 27 H 0.02 1.27 7.38 -2.39 -0.02 1.25 15 28 H -0.02 -1.27 8.14 -2.39 -0.02 -1.28 15 29 H 0.26 15.36 8.31 -92.71 -0.77 14.59 15 Total: -1.00 -80.36 257.98 6.54 -73.82 By element: Atomic # 1 Polarization: -3.72 SS G_CDS: 0.33 Total: -3.39 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 2.85 Total: -16.07 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -0.04 Total: -69.79 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: 1.37 Total: -32.06 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -80.36 6.54 -73.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260980848.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.609 kcal (2) G-P(sol) polarization free energy of solvation -80.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds