Wall clock time and date at job start Mon Mar 30 2020 02:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.47110 * 2 1 4 4 C 1.53001 * 109.47573 * 239.99839 * 2 1 3 5 5 C 1.50707 * 109.46992 * 119.99878 * 2 1 3 6 6 N 1.29940 * 127.26609 * 0.02562 * 5 2 1 7 7 O 1.20530 * 113.21563 * 180.02562 * 6 5 2 8 8 C 1.33999 * 113.25405 * 0.02562 * 7 6 5 9 9 O 1.34957 * 127.17710 * 180.02562 * 8 7 6 10 10 C 1.40833 * 105.64436 * 359.72522 * 8 7 6 11 11 C 1.41198 * 128.79303 * 180.25750 * 10 8 7 12 12 H 1.08002 * 119.99939 * 204.98676 * 11 10 8 13 13 C 1.39602 * 120.00171 * 24.98640 * 11 10 8 14 14 N 1.31162 * 119.99894 * 18.38227 * 13 11 10 15 15 Si 1.86804 * 120.00114 * 198.38459 * 13 11 10 16 16 H 1.48498 * 109.46908 * 89.99900 * 15 13 11 17 17 H 1.48500 * 109.46964 * 209.99727 * 15 13 11 18 18 H 1.48499 * 109.46885 * 329.99839 * 15 13 11 19 19 H 1.08992 * 109.47392 * 300.00071 * 1 2 3 20 20 H 1.08998 * 109.46783 * 60.00076 * 1 2 3 21 21 H 1.09000 * 109.46876 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.46675 * 179.97438 * 3 2 1 23 23 H 1.08999 * 109.46916 * 300.00086 * 3 2 1 24 24 H 1.08995 * 109.46726 * 60.00140 * 3 2 1 25 25 H 1.09005 * 109.46819 * 300.00327 * 4 2 1 26 26 H 1.08999 * 109.46797 * 59.99703 * 4 2 1 27 27 H 1.09001 * 109.47046 * 179.97438 * 4 2 1 28 28 H 0.96705 * 113.99881 * 359.96929 * 9 8 7 29 29 H 0.97001 * 119.99806 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 1.3196 -1.2540 2.1713 7 8 1.9852 -1.7559 3.0418 8 6 3.3038 -1.6351 2.8358 9 8 4.2979 -2.0910 3.6265 10 6 3.4358 -0.9394 1.6184 11 6 4.6144 -0.5560 0.9420 12 1 4.5992 0.2859 0.2656 13 6 5.7992 -1.2650 1.1474 14 7 5.7610 -2.4713 1.6610 15 14 7.4392 -0.4959 0.6907 16 1 7.9765 0.2522 1.8556 17 1 8.3961 -1.5636 0.3040 18 1 7.2486 0.4351 -0.4504 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9564 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6768 -1.7490 -1.2492 26 1 1.6768 -0.2075 -2.1392 27 1 3.1301 -0.7208 -1.2493 28 1 3.9901 -2.5497 4.4202 29 1 6.5843 -2.9638 1.8041 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260987905.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:32 Heat of formation + Delta-G solvation = -6.037185 kcal Electronic energy + Delta-G solvation = -14561.998068 eV Core-core repulsion = 12067.183072 eV Total energy + Delta-G solvation = -2494.814996 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.73977 -36.56445 -36.13035 -33.39266 -30.80115 -29.13786 -26.61901 -26.53404 -25.59668 -21.96139 -20.62760 -19.06185 -17.31752 -16.04646 -16.02729 -15.05560 -14.02454 -13.74710 -13.54118 -13.43201 -12.82355 -12.42260 -11.86449 -11.72860 -11.61000 -11.32745 -11.17416 -11.03181 -10.65169 -10.39280 -10.37516 -10.24392 -9.96516 -9.39660 -8.88252 -8.30659 -7.00524 -6.47530 -4.06743 3.09299 3.21175 3.23097 3.26259 3.94881 4.13972 4.49776 5.20372 5.26275 5.44372 5.68372 5.75019 5.95019 6.11805 6.22962 6.36815 6.43084 6.50142 6.58789 6.68538 6.74195 7.01428 7.12687 7.29611 7.39076 7.62490 8.43042 8.67465 9.03189 9.08489 10.07799 10.53512 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.030005 B = 0.014001 C = 0.010484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.960267 B = 1999.318421 C = 2670.133044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.031 3.969 3 C -0.137 4.137 4 C -0.135 4.135 5 C -0.021 4.021 6 N -0.388 5.388 7 O 0.031 5.969 8 C 0.002 3.998 9 O -0.382 6.382 10 C 0.000 4.000 11 C -0.436 4.436 12 H 0.079 0.921 13 C 0.070 3.930 14 N -0.782 5.782 15 Si 0.902 3.098 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.266 1.266 19 H 0.052 0.948 20 H 0.049 0.951 21 H 0.052 0.948 22 H 0.071 0.929 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.359 0.641 29 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.016 2.938 -1.807 4.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.030 3.970 3 C -0.194 4.194 4 C -0.193 4.193 5 C -0.179 4.179 6 N -0.105 5.105 7 O -0.034 6.034 8 C -0.104 4.104 9 O -0.179 6.179 10 C -0.006 4.006 11 C -0.467 4.467 12 H 0.097 0.903 13 C -0.147 4.147 14 N -0.410 5.410 15 Si 0.727 3.273 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.190 1.190 19 H 0.071 0.929 20 H 0.068 0.932 21 H 0.072 0.928 22 H 0.090 0.910 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.094 0.906 28 H 0.207 0.793 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.694 2.852 -1.945 5.056 hybrid contribution 1.447 -0.094 0.230 1.468 sum -2.247 2.759 -1.715 3.950 Atomic orbital electron populations 1.21754 0.94916 1.01598 1.00668 1.18549 0.94032 0.94007 0.90409 1.21856 1.02752 0.94485 1.00349 1.21805 1.03204 0.99294 0.94984 1.24001 0.91569 1.04884 0.97453 1.72984 1.19361 1.16528 1.01590 1.84174 1.16792 1.61994 1.40488 1.22311 0.78362 1.13038 0.96707 1.85432 1.24049 1.73347 1.35029 1.18519 0.91362 1.00194 0.90549 1.18286 0.91290 1.13124 1.24031 0.90281 1.25610 1.00330 0.94101 0.94610 1.69896 1.29136 1.08696 1.33223 0.86422 0.81989 0.79503 0.79345 1.19873 1.20833 1.19036 0.92899 0.93239 0.92847 0.91032 0.93207 0.93335 0.93373 0.93466 0.90604 0.79278 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 8.03 37.16 0.30 -1.99 15 2 C 0.03 0.62 0.96 -155.65 -0.15 0.47 15 3 C -0.14 -2.46 8.41 37.16 0.31 -2.14 15 4 C -0.13 -2.53 8.40 37.16 0.31 -2.22 15 5 C -0.02 -0.52 5.80 -79.66 -0.46 -0.98 15 6 N -0.39 -9.60 11.33 35.02 0.40 -9.20 15 7 O 0.03 0.77 11.07 -5.70 -0.06 0.70 15 8 C 0.00 0.06 8.36 31.71 0.27 0.32 15 9 O -0.38 -9.29 11.17 -39.68 -0.44 -9.73 15 10 C 0.00 0.00 5.90 -104.07 -0.61 -0.62 15 11 C -0.44 -11.63 8.09 -37.95 -0.31 -11.94 15 12 H 0.08 2.00 6.03 -52.49 -0.32 1.69 15 13 C 0.07 1.83 5.24 -17.33 -0.09 1.74 15 14 N -0.78 -21.21 10.72 55.53 0.60 -20.62 15 15 Si 0.90 19.67 29.60 -169.99 -5.03 14.64 15 16 H -0.27 -5.99 7.11 56.52 0.40 -5.58 15 17 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 18 H -0.27 -5.64 7.11 56.52 0.40 -5.24 15 19 H 0.05 0.93 8.14 -51.93 -0.42 0.50 15 20 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 21 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 22 H 0.07 1.39 6.04 -51.93 -0.31 1.07 15 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 27 H 0.07 1.56 6.95 -51.93 -0.36 1.20 15 28 H 0.36 6.56 9.06 45.56 0.41 6.97 15 29 H 0.27 6.88 8.30 -40.82 -0.34 6.54 15 LS Contribution 247.78 15.07 3.73 3.73 Total: -1.00 -30.06 247.78 -3.92 -33.98 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -2.67 Total: 3.87 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -0.43 Total: -17.37 kcal Atomic # 7 Polarization: -30.81 SS G_CDS: 0.99 Total: -29.82 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.51 Total: -9.03 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.06 -3.92 -33.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260987905.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.939 kcal (2) G-P(sol) polarization free energy of solvation -30.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds