Wall clock time and date at job start Mon Mar 30 2020 02:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.47110 * 2 1 4 4 C 1.53001 * 109.47573 * 239.99839 * 2 1 3 5 5 C 1.50707 * 109.46992 * 119.99878 * 2 1 3 6 6 N 1.29940 * 127.26609 * 0.02562 * 5 2 1 7 7 O 1.20530 * 113.21563 * 180.02562 * 6 5 2 8 8 C 1.33999 * 113.25405 * 0.02562 * 7 6 5 9 9 O 1.34957 * 127.17710 * 180.02562 * 8 7 6 10 10 C 1.40833 * 105.64436 * 359.72522 * 8 7 6 11 11 C 1.41198 * 128.79303 * 180.25750 * 10 8 7 12 12 H 1.08002 * 119.99939 * 204.98676 * 11 10 8 13 13 C 1.39602 * 120.00171 * 24.98640 * 11 10 8 14 14 N 1.31162 * 119.99894 * 18.38227 * 13 11 10 15 15 Si 1.86804 * 120.00114 * 198.38459 * 13 11 10 16 16 H 1.48498 * 109.46908 * 89.99900 * 15 13 11 17 17 H 1.48500 * 109.46964 * 209.99727 * 15 13 11 18 18 H 1.48499 * 109.46885 * 329.99839 * 15 13 11 19 19 H 1.08992 * 109.47392 * 300.00071 * 1 2 3 20 20 H 1.08998 * 109.46783 * 60.00076 * 1 2 3 21 21 H 1.09000 * 109.46876 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.46675 * 179.97438 * 3 2 1 23 23 H 1.08999 * 109.46916 * 300.00086 * 3 2 1 24 24 H 1.08995 * 109.46726 * 60.00140 * 3 2 1 25 25 H 1.09005 * 109.46819 * 300.00327 * 4 2 1 26 26 H 1.08999 * 109.46797 * 59.99703 * 4 2 1 27 27 H 1.09001 * 109.47046 * 179.97438 * 4 2 1 28 28 H 0.96705 * 113.99881 * 359.96929 * 9 8 7 29 29 H 0.97001 * 119.99806 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 1.3196 -1.2540 2.1713 7 8 1.9852 -1.7559 3.0418 8 6 3.3038 -1.6351 2.8358 9 8 4.2979 -2.0910 3.6265 10 6 3.4358 -0.9394 1.6184 11 6 4.6144 -0.5560 0.9420 12 1 4.5992 0.2859 0.2656 13 6 5.7992 -1.2650 1.1474 14 7 5.7610 -2.4713 1.6610 15 14 7.4392 -0.4959 0.6907 16 1 7.9765 0.2522 1.8556 17 1 8.3961 -1.5636 0.3040 18 1 7.2486 0.4351 -0.4504 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9564 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6768 -1.7490 -1.2492 26 1 1.6768 -0.2075 -2.1392 27 1 3.1301 -0.7208 -1.2493 28 1 3.9901 -2.5497 4.4202 29 1 6.5843 -2.9638 1.8041 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260987905.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:32 Heat of formation + Delta-G solvation = -25.390966 kcal Electronic energy + Delta-G solvation = -14562.837311 eV Core-core repulsion = 12067.183072 eV Total energy + Delta-G solvation = -2495.654239 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.66826 -38.17894 -38.02955 -35.32384 -32.68277 -31.08110 -28.10602 -27.99735 -27.50474 -23.76063 -22.56999 -20.85053 -19.23340 -17.99032 -17.83470 -16.95635 -15.79978 -15.46404 -15.29065 -14.90187 -14.47465 -14.29840 -13.77990 -13.27390 -13.04503 -12.95336 -12.92026 -12.56623 -12.36186 -11.98014 -11.91168 -11.87477 -11.75075 -11.25420 -10.78175 -10.20844 -9.00545 -8.42196 -6.08270 1.27225 1.39490 1.44526 1.55106 2.02071 2.31925 2.54616 3.30424 3.55495 3.76357 4.16207 4.20400 4.41562 4.65491 4.87045 4.89228 4.97032 5.04734 5.08094 5.10345 5.22008 5.37872 5.48549 5.57701 5.68235 5.73888 6.43945 6.78028 7.07252 7.17356 8.12643 8.60364 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.030005 B = 0.014001 C = 0.010484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.960267 B = 1999.318421 C = 2670.133044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.021 3.979 3 C -0.131 4.131 4 C -0.129 4.129 5 C -0.015 4.015 6 N -0.395 5.395 7 O 0.022 5.978 8 C -0.012 4.012 9 O -0.393 6.393 10 C -0.039 4.039 11 C -0.455 4.455 12 H 0.085 0.915 13 C 0.024 3.976 14 N -0.815 5.815 15 Si 0.972 3.028 16 H -0.274 1.274 17 H -0.277 1.277 18 H -0.254 1.254 19 H 0.046 0.954 20 H 0.087 0.913 21 H 0.042 0.958 22 H 0.051 0.949 23 H 0.088 0.912 24 H 0.044 0.956 25 H 0.035 0.965 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.382 0.618 29 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.101 4.134 -3.131 6.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.020 3.980 3 C -0.189 4.189 4 C -0.187 4.187 5 C -0.174 4.174 6 N -0.114 5.114 7 O -0.040 6.040 8 C -0.118 4.118 9 O -0.192 6.192 10 C -0.045 4.045 11 C -0.486 4.486 12 H 0.103 0.897 13 C -0.189 4.189 14 N -0.444 5.444 15 Si 0.795 3.205 16 H -0.200 1.200 17 H -0.202 1.202 18 H -0.178 1.178 19 H 0.065 0.935 20 H 0.105 0.895 21 H 0.061 0.939 22 H 0.070 0.930 23 H 0.107 0.893 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.106 0.894 27 H 0.070 0.930 28 H 0.233 0.767 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.788 4.031 -3.237 6.409 hybrid contribution 1.403 -0.493 0.669 1.631 sum -2.384 3.538 -2.568 4.980 Atomic orbital electron populations 1.21701 0.92776 1.01438 1.02266 1.18885 0.95809 0.94647 0.88658 1.21809 1.01485 0.93461 1.02095 1.21754 1.01600 0.99131 0.96194 1.24789 0.90662 1.03621 0.98313 1.72954 1.19529 1.17036 1.01923 1.84151 1.16421 1.62588 1.40882 1.22570 0.78832 1.13254 0.97110 1.85360 1.24104 1.73644 1.36117 1.19044 0.92843 1.01266 0.91307 1.18566 0.91917 1.13557 1.24595 0.89694 1.26475 1.03720 0.94329 0.94414 1.69984 1.30163 1.09868 1.34376 0.85334 0.77270 0.78697 0.79184 1.19961 1.20198 1.17787 0.93468 0.89460 0.93906 0.92959 0.89324 0.93703 0.94552 0.89405 0.93016 0.76654 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.99 8.03 71.98 0.58 -3.41 15 2 C 0.02 0.80 0.96 -52.92 -0.05 0.75 15 3 C -0.13 -4.39 8.41 71.98 0.61 -3.79 15 4 C -0.13 -4.60 8.40 71.98 0.60 -3.99 15 5 C -0.02 -0.73 5.80 45.25 0.26 -0.46 15 6 N -0.40 -19.65 11.33 -43.45 -0.49 -20.14 15 7 O 0.02 1.12 11.07 94.59 1.05 2.17 15 8 C -0.01 -0.63 8.36 68.45 0.57 -0.06 15 9 O -0.39 -19.37 11.17 -60.19 -0.67 -20.05 15 10 C -0.04 -2.10 5.90 -19.50 -0.12 -2.22 15 11 C -0.46 -24.42 8.09 23.33 0.19 -24.23 15 12 H 0.09 4.31 6.03 -2.91 -0.02 4.29 15 13 C 0.02 1.24 5.24 85.12 0.45 1.69 15 14 N -0.82 -44.63 10.72 21.78 0.23 -44.39 15 15 Si 0.97 40.11 29.60 68.60 2.03 42.14 15 16 H -0.27 -11.26 7.11 99.48 0.71 -10.56 15 17 H -0.28 -11.04 7.11 99.48 0.71 -10.33 15 18 H -0.25 -9.90 7.11 99.48 0.71 -9.19 15 19 H 0.05 1.55 8.14 -2.39 -0.02 1.53 15 20 H 0.09 2.13 8.14 -2.39 -0.02 2.11 15 21 H 0.04 1.44 8.14 -2.39 -0.02 1.42 15 22 H 0.05 1.95 6.04 -2.39 -0.01 1.94 15 23 H 0.09 2.27 8.14 -2.39 -0.02 2.25 15 24 H 0.04 1.51 8.14 -2.39 -0.02 1.49 15 25 H 0.04 1.34 8.14 -2.38 -0.02 1.32 15 26 H 0.09 2.38 8.14 -2.39 -0.02 2.37 15 27 H 0.05 2.08 6.95 -2.39 -0.02 2.07 15 28 H 0.38 14.12 9.06 -74.05 -0.67 13.45 15 29 H 0.28 14.01 8.30 -92.71 -0.77 13.24 15 Total: -1.00 -64.35 247.78 5.73 -58.62 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.50 Total: 17.39 kcal Atomic # 6 Polarization: -38.82 SS G_CDS: 3.09 Total: -35.73 kcal Atomic # 7 Polarization: -64.28 SS G_CDS: -0.26 Total: -64.54 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.38 Total: -17.88 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -64.35 5.73 -58.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260987905.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.227 kcal (2) G-P(sol) polarization free energy of solvation -64.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds