Wall clock time and date at job start Mon Mar 30 2020 03:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46928 * 2 1 4 4 C 1.50693 * 109.47283 * 119.99880 * 2 1 3 5 5 N 1.33368 * 125.46898 * 300.00366 * 4 2 1 6 6 C 1.31393 * 109.71807 * 179.74684 * 5 4 2 7 7 O 1.35442 * 126.04142 * 180.25161 * 6 5 4 8 8 N 1.34817 * 107.91659 * 0.39988 * 6 5 4 9 9 C 1.46500 * 126.82476 * 179.87103 * 8 6 5 10 10 C 1.50696 * 109.46944 * 269.71119 * 9 8 6 11 11 H 1.07999 * 120.00202 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99746 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99573 * 0.27650 * 12 10 9 14 14 Si 1.86800 * 119.99781 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47035 * 60.00183 * 14 12 10 16 16 H 1.48503 * 109.46845 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47237 * 299.99939 * 14 12 10 18 18 N 1.30610 * 125.46651 * 119.99640 * 4 2 1 19 19 H 1.09007 * 109.47195 * 300.00099 * 1 2 3 20 20 H 1.08998 * 109.47615 * 59.99774 * 1 2 3 21 21 H 1.08993 * 109.47400 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46600 * 240.00334 * 2 1 3 23 23 H 1.09000 * 109.46683 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47322 * 299.99754 * 3 2 1 25 25 H 1.08996 * 109.47676 * 60.00239 * 3 2 1 26 26 H 0.96697 * 114.00183 * 270.17881 * 7 6 5 27 27 H 1.09000 * 109.46609 * 149.71301 * 9 8 6 28 28 H 1.08999 * 109.46486 * 29.71380 * 9 8 6 29 29 H 0.97001 * 120.00651 * 359.71956 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 7 1.7783 -0.3510 2.4894 6 6 2.3635 -1.1881 3.3160 7 8 2.3180 -1.1350 4.6686 8 7 3.0200 -2.1071 2.5798 9 6 3.8140 -3.2308 3.0828 10 6 5.2465 -2.7961 3.2556 11 1 5.5366 -1.7841 3.0145 12 6 6.1872 -3.6906 3.7205 13 7 5.8352 -4.9248 4.0080 14 14 7.9630 -3.1519 3.9340 15 1 8.0263 -2.0286 4.9033 16 1 8.7679 -4.2910 4.4440 17 1 8.5064 -2.7078 2.6253 18 7 2.7864 -1.7768 1.2350 19 1 -0.3634 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9564 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 3.0252 -0.6083 5.0656 27 1 3.7679 -4.0554 2.3714 28 1 3.4147 -3.5567 4.0432 29 1 4.9131 -5.2046 3.8968 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261027291.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:27 Heat of formation + Delta-G solvation = 4.231407 kcal Electronic energy + Delta-G solvation = -13868.890623 eV Core-core repulsion = 11406.813658 eV Total energy + Delta-G solvation = -2462.076965 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.16714 -38.72772 -36.88285 -35.81038 -33.64066 -31.52586 -28.80644 -28.00558 -25.57297 -24.02281 -23.02764 -20.82213 -19.94962 -19.02826 -17.89236 -16.70954 -16.13796 -15.72419 -15.45034 -15.16321 -14.84629 -14.52141 -13.91708 -13.79082 -13.47069 -12.95722 -12.64026 -12.52038 -12.23018 -12.16292 -11.97385 -11.89202 -11.54806 -11.08397 -10.76126 -10.67635 -10.29794 -8.89624 -6.68841 0.46182 1.16436 1.50473 1.56173 1.70721 1.78040 2.43539 2.53645 2.93648 3.42412 3.70666 4.13061 4.22464 4.33422 4.43281 4.60611 4.85800 4.96124 4.98132 5.02215 5.21116 5.35162 5.37519 5.41122 5.45046 5.48129 5.88550 6.23565 6.44761 7.00154 7.10210 8.48808 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.042742 B = 0.007959 C = 0.007572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.935189 B = 3517.115702 C = 3697.105528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.001 4.001 3 C -0.132 4.132 4 C 0.222 3.778 5 N -0.551 5.551 6 C 0.434 3.566 7 O -0.444 6.444 8 N -0.358 5.358 9 C 0.255 3.745 10 C -0.631 4.631 11 H 0.048 0.952 12 C -0.012 4.012 13 N -0.916 5.916 14 Si 1.122 2.878 15 H -0.264 1.264 16 H -0.276 1.276 17 H -0.275 1.275 18 N -0.341 5.341 19 H 0.056 0.944 20 H 0.098 0.902 21 H 0.043 0.957 22 H 0.098 0.902 23 H 0.041 0.959 24 H 0.098 0.902 25 H 0.057 0.943 26 H 0.428 0.572 27 H 0.026 0.974 28 H 0.045 0.955 29 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.979 10.659 -4.553 13.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.022 4.022 3 C -0.190 4.190 4 C -0.060 4.060 5 N -0.291 5.291 6 C 0.121 3.879 7 O -0.247 6.247 8 N -0.157 5.157 9 C 0.135 3.865 10 C -0.669 4.669 11 H 0.066 0.934 12 C -0.213 4.213 13 N -0.551 5.551 14 Si 0.942 3.058 15 H -0.188 1.188 16 H -0.201 1.201 17 H -0.201 1.201 18 N -0.174 5.174 19 H 0.076 0.924 20 H 0.117 0.883 21 H 0.062 0.938 22 H 0.116 0.884 23 H 0.060 0.940 24 H 0.116 0.884 25 H 0.077 0.923 26 H 0.290 0.710 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.877 9.610 -4.428 11.651 hybrid contribution -1.035 0.091 0.247 1.068 sum -5.912 9.701 -4.181 12.105 Atomic orbital electron populations 1.21732 0.91668 1.01860 1.03687 1.19766 0.97483 0.95937 0.89027 1.21732 1.00354 0.93192 1.03708 1.24832 0.94464 0.92294 0.94388 1.70495 1.30025 1.27720 1.00873 1.21402 0.92479 0.88125 0.85927 1.84691 1.55600 1.75193 1.09260 1.50986 1.36405 1.24417 1.03927 1.19473 0.90486 0.82601 0.93960 1.22250 0.93480 1.00488 1.50714 0.93366 1.27388 1.09497 0.92675 0.91739 1.70937 1.20574 1.18189 1.45426 0.82858 0.69189 0.76039 0.77701 1.18829 1.20114 1.20075 1.78021 1.23663 1.19855 0.95822 0.92443 0.88335 0.93825 0.88367 0.93961 0.88359 0.92349 0.71001 0.95580 0.93709 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.18 71.98 0.66 -2.32 15 2 C 0.00 -0.03 3.39 -11.54 -0.04 -0.07 15 3 C -0.13 -3.03 9.18 71.98 0.66 -2.37 15 4 C 0.22 8.70 6.64 138.62 0.92 9.62 15 5 N -0.55 -22.41 11.22 -305.75 -3.43 -25.85 15 6 C 0.43 18.72 9.13 180.07 1.64 20.37 15 7 O -0.44 -16.27 13.58 -87.38 -1.19 -17.46 15 8 N -0.36 -17.29 3.63 -468.05 -1.70 -18.99 15 9 C 0.26 13.33 5.52 85.63 0.47 13.81 15 10 C -0.63 -34.72 9.39 25.60 0.24 -34.48 15 11 H 0.05 2.70 7.81 -2.91 -0.02 2.68 15 12 C -0.01 -0.66 5.46 84.66 0.46 -0.20 15 13 N -0.92 -52.91 13.65 21.45 0.29 -52.61 15 14 Si 1.12 47.40 29.90 68.60 2.05 49.45 15 15 H -0.26 -10.16 7.11 99.48 0.71 -9.46 15 16 H -0.28 -11.54 7.11 99.48 0.71 -10.83 15 17 H -0.28 -11.15 7.11 99.48 0.71 -10.45 15 18 N -0.34 -15.83 12.68 -51.32 -0.65 -16.48 15 19 H 0.06 1.40 8.14 -2.38 -0.02 1.38 15 20 H 0.10 1.52 8.14 -2.39 -0.02 1.50 15 21 H 0.04 1.07 8.14 -2.39 -0.02 1.05 15 22 H 0.10 2.54 8.14 -2.39 -0.02 2.52 15 23 H 0.04 1.07 8.14 -2.39 -0.02 1.05 15 24 H 0.10 1.55 8.14 -2.39 -0.02 1.53 15 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 15 26 H 0.43 11.52 9.06 -74.06 -0.67 10.84 15 27 H 0.03 1.45 8.00 -2.39 -0.02 1.43 15 28 H 0.05 2.35 8.01 -2.39 -0.02 2.33 15 29 H 0.26 15.09 7.22 -92.71 -0.67 14.42 15 Total: -1.00 -67.16 260.97 0.98 -66.18 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.58 Total: 11.41 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 5.02 Total: 4.35 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -5.49 Total: -113.93 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -1.19 Total: -17.46 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.05 Total: 49.45 kcal Total: -67.16 0.98 -66.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261027291.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.413 kcal (2) G-P(sol) polarization free energy of solvation -67.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds