Wall clock time and date at job start Mon Mar 30 2020 03:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47064 * 2 1 4 4 N 1.28712 * 125.86980 * 274.91698 * 3 2 1 5 5 N 1.28638 * 110.17994 * 179.97438 * 4 3 2 6 6 C 1.33771 * 108.88422 * 359.97438 * 5 4 3 7 7 C 1.35314 * 125.86816 * 94.89126 * 3 2 1 8 8 C 1.50710 * 126.91326 * 0.02562 * 7 3 2 9 9 H 1.09003 * 109.46582 * 335.20755 * 8 7 3 10 10 O 1.42899 * 109.47231 * 215.21155 * 8 7 3 11 11 C 1.52999 * 109.46768 * 95.20717 * 8 7 3 12 12 C 1.50702 * 109.46448 * 184.99859 * 11 8 7 13 13 H 1.07998 * 120.00649 * 0.02562 * 12 11 8 14 14 C 1.37878 * 119.99622 * 180.02562 * 12 11 8 15 15 N 1.31515 * 120.00044 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00078 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47020 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47058 * 120.00081 * 16 14 12 19 19 H 1.48500 * 109.46996 * 240.00088 * 16 14 12 20 20 H 1.08999 * 109.47028 * 60.00114 * 1 2 3 21 21 H 1.09005 * 109.47158 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47251 * 299.99770 * 1 2 3 23 23 H 1.08991 * 109.47192 * 239.99714 * 2 1 3 24 24 H 1.09002 * 109.46303 * 119.99941 * 2 1 3 25 25 H 1.07998 * 126.74798 * 180.02562 * 6 5 4 26 26 H 0.96700 * 114.00098 * 294.60537 * 10 8 7 27 27 H 1.08997 * 109.47092 * 304.99877 * 11 8 7 28 28 H 1.09002 * 109.46929 * 65.00539 * 11 8 7 29 29 H 0.97001 * 120.00031 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1855 2.1220 -1.0392 5 7 2.6259 3.2799 -0.6925 6 6 2.7578 3.3123 0.6383 7 6 2.3708 2.0975 1.0925 8 6 2.3383 1.6358 2.5268 9 1 1.6066 0.8351 2.6342 10 8 1.9746 2.7297 3.3713 11 6 3.7217 1.1198 2.9278 12 6 3.6594 0.5455 4.3197 13 1 2.7264 0.5479 4.8637 14 6 4.7936 0.0170 4.8988 15 7 5.9299 0.0146 4.2366 16 14 4.7164 -0.6955 6.6238 17 1 3.3326 -0.5724 7.1487 18 1 5.1062 -2.1279 6.5857 19 1 5.6489 0.0479 7.5087 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8934 -0.5138 -0.8899 24 1 1.8932 -0.5139 0.8900 25 1 3.1050 4.1442 1.2331 26 1 2.6247 3.4454 3.3898 27 1 4.0372 0.3452 2.2289 28 1 4.4367 1.9423 2.9058 29 1 6.7279 -0.3569 4.6441 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261125320.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:18 Heat of formation + Delta-G solvation = 32.773541 kcal Electronic energy + Delta-G solvation = -14029.760050 eV Core-core repulsion = 11568.920765 eV Total energy + Delta-G solvation = -2460.839285 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.88693 -36.94992 -35.22617 -33.01179 -31.22967 -30.51088 -28.98823 -25.17315 -24.24640 -22.38982 -21.39953 -20.15640 -17.48711 -16.55654 -15.88778 -15.54664 -15.04120 -14.65643 -14.06780 -13.70553 -13.61555 -12.81567 -12.39515 -12.20810 -11.78652 -11.52206 -11.29449 -10.94778 -10.92104 -10.71918 -10.50025 -10.27505 -9.77459 -9.40270 -9.29257 -8.54445 -8.53284 -6.14834 -4.18685 1.96720 2.65538 2.96354 3.23776 3.32258 3.36788 4.34261 4.58302 4.79033 4.85853 5.07259 5.16448 5.23258 5.25698 5.48734 5.52309 5.55015 5.94337 5.99629 6.30748 6.32568 6.53946 6.93533 7.28721 7.40651 7.81523 8.14136 8.23820 8.87487 8.88242 9.46780 10.96151 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.039418 B = 0.008415 C = 0.007953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.164058 B = 3326.457561 C = 3519.831717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.285 5.285 4 N -0.103 5.103 5 N -0.275 5.275 6 C -0.057 4.057 7 C -0.021 4.021 8 C 0.180 3.820 9 H 0.098 0.902 10 O -0.545 6.545 11 C 0.003 3.997 12 C -0.518 4.518 13 H 0.064 0.936 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.896 3.104 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.283 1.283 20 H 0.065 0.935 21 H 0.083 0.917 22 H 0.066 0.934 23 H 0.103 0.897 24 H 0.111 0.889 25 H 0.184 0.816 26 H 0.373 0.627 27 H 0.024 0.976 28 H 0.027 0.973 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.891 -0.045 -4.896 9.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.015 4.015 3 N -0.080 5.080 4 N -0.082 5.082 5 N -0.141 5.141 6 C -0.214 4.214 7 C -0.154 4.154 8 C 0.119 3.881 9 H 0.115 0.885 10 O -0.348 6.348 11 C -0.035 4.035 12 C -0.556 4.556 13 H 0.082 0.918 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.195 1.195 18 H -0.210 1.210 19 H -0.209 1.209 20 H 0.085 0.915 21 H 0.102 0.898 22 H 0.085 0.915 23 H 0.122 0.878 24 H 0.129 0.871 25 H 0.201 0.799 26 H 0.220 0.780 27 H 0.042 0.958 28 H 0.045 0.955 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.357 -0.398 -6.327 10.490 hybrid contribution 0.769 -0.281 1.903 2.072 sum -7.589 -0.679 -4.424 8.810 Atomic orbital electron populations 1.22142 0.93285 1.03653 1.03501 1.22112 0.96107 0.77112 1.06154 1.47257 1.42765 1.13278 1.04723 1.78135 1.19347 0.98420 1.12331 1.74957 1.15046 1.11494 1.12643 1.23162 1.08023 0.98380 0.91870 1.23719 1.03893 0.93685 0.94076 1.20610 1.01048 0.88077 0.78404 0.88456 1.86519 1.49667 1.31513 1.67127 1.19773 0.88988 0.97262 0.97445 1.21121 0.95936 1.39046 0.99527 0.91797 1.25024 0.95360 0.95924 0.98056 1.69975 1.00018 1.45723 1.37574 0.86467 0.78279 0.78656 0.84232 1.19533 1.21026 1.20918 0.91550 0.89821 0.91474 0.87836 0.87069 0.79869 0.77961 0.95774 0.95461 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 10.24 37.16 0.38 -1.37 15 2 C 0.11 1.35 6.81 -4.04 -0.03 1.32 15 3 N -0.29 -4.83 3.34 -57.05 -0.19 -5.02 15 4 N -0.10 -1.93 13.16 60.35 0.79 -1.14 15 5 N -0.28 -5.35 12.41 30.23 0.38 -4.97 15 6 C -0.06 -1.03 11.50 -17.74 -0.20 -1.23 15 7 C -0.02 -0.38 6.05 -82.08 -0.50 -0.87 15 8 C 0.18 3.45 3.02 -27.88 -0.08 3.36 15 9 H 0.10 1.80 7.45 -51.93 -0.39 1.41 15 10 O -0.54 -10.18 12.94 -35.23 -0.46 -10.64 15 11 C 0.00 0.07 4.59 -27.88 -0.13 -0.05 15 12 C -0.52 -13.58 8.88 -34.44 -0.31 -13.89 15 13 H 0.06 1.67 7.74 -52.49 -0.41 1.26 15 14 C 0.06 1.57 5.46 -17.82 -0.10 1.48 15 15 N -0.89 -25.60 13.29 55.43 0.74 -24.86 15 16 Si 0.90 20.72 29.54 -169.99 -5.02 15.69 15 17 H -0.27 -6.15 7.11 56.52 0.40 -5.74 15 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 20 H 0.07 0.71 8.14 -51.93 -0.42 0.29 15 21 H 0.08 0.65 8.14 -51.93 -0.42 0.23 15 22 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 23 H 0.10 1.12 8.14 -51.93 -0.42 0.70 15 24 H 0.11 1.39 7.37 -51.93 -0.38 1.01 15 25 H 0.18 2.72 7.83 -52.49 -0.41 2.31 15 26 H 0.37 5.84 8.52 45.56 0.39 6.23 15 27 H 0.02 0.61 8.14 -51.93 -0.42 0.18 15 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 15 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 LS Contribution 258.62 15.07 3.90 3.90 Total: -1.00 -31.60 258.62 -3.70 -35.29 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -2.87 Total: 3.01 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -0.96 Total: -11.26 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 1.72 Total: -35.99 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -0.46 Total: -10.64 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.60 -3.70 -35.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261125320.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.067 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds