Wall clock time and date at job start Mon Mar 30 2020 03:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47064 * 2 1 4 4 N 1.28712 * 125.86980 * 274.91698 * 3 2 1 5 5 N 1.28638 * 110.17994 * 179.97438 * 4 3 2 6 6 C 1.33771 * 108.88422 * 359.97438 * 5 4 3 7 7 C 1.35314 * 125.86816 * 94.89126 * 3 2 1 8 8 C 1.50710 * 126.91326 * 0.02562 * 7 3 2 9 9 H 1.09003 * 109.46582 * 335.20755 * 8 7 3 10 10 O 1.42899 * 109.47231 * 215.21155 * 8 7 3 11 11 C 1.52999 * 109.46768 * 95.20717 * 8 7 3 12 12 C 1.50702 * 109.46448 * 184.99859 * 11 8 7 13 13 H 1.07998 * 120.00649 * 0.02562 * 12 11 8 14 14 C 1.37878 * 119.99622 * 180.02562 * 12 11 8 15 15 N 1.31515 * 120.00044 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00078 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47020 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47058 * 120.00081 * 16 14 12 19 19 H 1.48500 * 109.46996 * 240.00088 * 16 14 12 20 20 H 1.08999 * 109.47028 * 60.00114 * 1 2 3 21 21 H 1.09005 * 109.47158 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47251 * 299.99770 * 1 2 3 23 23 H 1.08991 * 109.47192 * 239.99714 * 2 1 3 24 24 H 1.09002 * 109.46303 * 119.99941 * 2 1 3 25 25 H 1.07998 * 126.74798 * 180.02562 * 6 5 4 26 26 H 0.96700 * 114.00098 * 294.60537 * 10 8 7 27 27 H 1.08997 * 109.47092 * 304.99877 * 11 8 7 28 28 H 1.09002 * 109.46929 * 65.00539 * 11 8 7 29 29 H 0.97001 * 120.00031 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1855 2.1220 -1.0392 5 7 2.6259 3.2799 -0.6925 6 6 2.7578 3.3123 0.6383 7 6 2.3708 2.0975 1.0925 8 6 2.3383 1.6358 2.5268 9 1 1.6066 0.8351 2.6342 10 8 1.9746 2.7297 3.3713 11 6 3.7217 1.1198 2.9278 12 6 3.6594 0.5455 4.3197 13 1 2.7264 0.5479 4.8637 14 6 4.7936 0.0170 4.8988 15 7 5.9299 0.0146 4.2366 16 14 4.7164 -0.6955 6.6238 17 1 3.3326 -0.5724 7.1487 18 1 5.1062 -2.1279 6.5857 19 1 5.6489 0.0479 7.5087 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8934 -0.5138 -0.8899 24 1 1.8932 -0.5139 0.8900 25 1 3.1050 4.1442 1.2331 26 1 2.6247 3.4454 3.3898 27 1 4.0372 0.3452 2.2289 28 1 4.4367 1.9423 2.9058 29 1 6.7279 -0.3569 4.6441 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261125320.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:17 Heat of formation + Delta-G solvation = 9.255945 kcal Electronic energy + Delta-G solvation = -14030.779850 eV Core-core repulsion = 11568.920765 eV Total energy + Delta-G solvation = -2461.859085 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.27702 -38.51784 -36.41580 -34.99382 -32.75484 -31.65361 -30.75779 -26.92682 -25.40374 -24.03023 -22.88896 -21.56212 -18.97772 -18.24380 -17.48862 -16.99312 -16.51448 -16.31659 -15.52464 -15.13218 -14.86263 -14.31361 -13.87041 -13.35635 -13.20252 -13.02646 -12.79332 -12.63225 -12.55325 -12.37629 -12.06323 -11.88305 -11.30180 -11.10626 -10.93648 -10.60416 -10.04664 -8.20969 -6.31134 0.56639 1.42471 1.43100 1.45561 1.53466 1.57530 2.42287 3.13406 3.31682 3.57532 3.67617 3.89715 3.92983 4.08610 4.25919 4.41576 4.58191 4.68713 4.73025 4.92806 5.12229 5.18405 5.33309 5.50648 5.63909 5.75926 6.15557 6.79625 6.86372 7.38729 7.45915 8.90532 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.039418 B = 0.008415 C = 0.007953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.164058 B = 3326.457561 C = 3519.831717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.092 3.908 3 N -0.277 5.277 4 N -0.113 5.113 5 N -0.301 5.301 6 C -0.058 4.058 7 C -0.035 4.035 8 C 0.201 3.799 9 H 0.106 0.894 10 O -0.550 6.550 11 C 0.011 3.989 12 C -0.526 4.526 13 H 0.066 0.934 14 C 0.005 3.995 15 N -0.933 5.933 16 Si 0.962 3.038 17 H -0.261 1.261 18 H -0.280 1.280 19 H -0.282 1.282 20 H 0.062 0.938 21 H 0.115 0.885 22 H 0.056 0.944 23 H 0.122 0.878 24 H 0.112 0.888 25 H 0.208 0.792 26 H 0.386 0.614 27 H 0.002 0.998 28 H 0.006 0.994 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.979 -0.566 -4.306 9.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.027 4.027 3 N -0.073 5.073 4 N -0.092 5.092 5 N -0.166 5.166 6 C -0.216 4.216 7 C -0.168 4.168 8 C 0.139 3.861 9 H 0.124 0.876 10 O -0.355 6.355 11 C -0.027 4.027 12 C -0.564 4.564 13 H 0.084 0.916 14 C -0.193 4.193 15 N -0.573 5.573 16 Si 0.787 3.213 17 H -0.185 1.185 18 H -0.206 1.206 19 H -0.208 1.208 20 H 0.081 0.919 21 H 0.134 0.866 22 H 0.075 0.925 23 H 0.141 0.859 24 H 0.130 0.870 25 H 0.225 0.775 26 H 0.235 0.765 27 H 0.021 0.979 28 H 0.024 0.976 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.463 -0.917 -5.751 11.112 hybrid contribution 1.102 -0.127 1.687 2.019 sum -8.361 -1.044 -4.064 9.355 Atomic orbital electron populations 1.22118 0.91236 1.05530 1.02786 1.22561 0.97801 0.75211 1.07152 1.47629 1.41462 1.14264 1.03931 1.78068 1.19630 0.98646 1.12869 1.74938 1.16172 1.12107 1.13388 1.23652 1.07088 0.99146 0.91682 1.23562 1.05203 0.94167 0.93893 1.20165 0.98412 0.88464 0.79022 0.87648 1.86488 1.50198 1.31735 1.67078 1.19604 0.91218 0.95811 0.96036 1.21470 0.95860 1.38518 1.00593 0.91628 1.25866 0.95055 0.96434 1.01965 1.70094 1.00763 1.47032 1.39420 0.85437 0.78566 0.77825 0.79460 1.18511 1.20629 1.20832 0.91874 0.86644 0.92467 0.85945 0.87026 0.77538 0.76465 0.97937 0.97564 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 10.24 71.98 0.74 -2.22 15 2 C 0.09 2.19 6.81 86.38 0.59 2.78 15 3 N -0.28 -9.09 3.34 -334.39 -1.12 -10.21 15 4 N -0.11 -4.14 13.16 37.02 0.49 -3.65 15 5 N -0.30 -11.48 12.41 -58.26 -0.72 -12.21 15 6 C -0.06 -2.03 11.50 83.73 0.96 -1.07 15 7 C -0.03 -1.22 6.05 41.36 0.25 -0.97 15 8 C 0.20 7.49 3.02 29.85 0.09 7.58 15 9 H 0.11 3.75 7.45 -2.39 -0.02 3.73 15 10 O -0.55 -19.70 12.94 -148.98 -1.93 -21.62 15 11 C 0.01 0.53 4.59 29.85 0.14 0.67 15 12 C -0.53 -27.30 8.88 25.60 0.23 -27.08 15 13 H 0.07 3.33 7.74 -2.91 -0.02 3.30 15 14 C 0.00 0.26 5.46 84.65 0.46 0.72 15 15 N -0.93 -53.72 13.29 21.45 0.28 -53.44 15 16 Si 0.96 41.97 29.54 68.60 2.03 43.99 15 17 H -0.26 -10.88 7.11 99.48 0.71 -10.18 15 18 H -0.28 -11.99 7.11 99.48 0.71 -11.29 15 19 H -0.28 -12.21 7.11 99.48 0.71 -11.51 15 20 H 0.06 1.23 8.14 -2.39 -0.02 1.21 15 21 H 0.12 1.43 8.14 -2.38 -0.02 1.41 15 22 H 0.06 1.19 8.14 -2.39 -0.02 1.17 15 23 H 0.12 2.43 8.14 -2.39 -0.02 2.41 15 24 H 0.11 2.65 7.37 -2.39 -0.02 2.64 15 25 H 0.21 5.87 7.83 -2.91 -0.02 5.84 15 26 H 0.39 11.54 8.52 -74.06 -0.63 10.91 15 27 H 0.00 0.12 8.14 -2.39 -0.02 0.10 15 28 H 0.01 0.31 8.14 -2.39 -0.02 0.29 15 29 H 0.26 14.35 8.31 -92.71 -0.77 13.58 15 Total: -1.00 -66.12 258.62 3.01 -63.11 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.52 Total: 13.62 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 3.45 Total: -19.59 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -1.07 Total: -79.50 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -1.93 Total: -21.62 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Total: -66.12 3.01 -63.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261125320.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.366 kcal (2) G-P(sol) polarization free energy of solvation -66.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds