Wall clock time and date at job start Mon Mar 30 2020 03:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.46988 * 2 1 4 4 N 1.28717 * 125.86897 * 269.97281 * 3 2 1 5 5 N 1.28641 * 110.18032 * 180.02562 * 4 3 2 6 6 C 1.33773 * 108.88068 * 359.77227 * 5 4 3 7 7 C 1.35311 * 125.86688 * 90.00377 * 3 2 1 8 8 C 1.50697 * 126.91350 * 359.93666 * 7 3 2 9 9 H 1.09001 * 109.46613 * 25.00463 * 8 7 3 10 10 O 1.42905 * 109.46996 * 145.00052 * 8 7 3 11 11 C 1.52997 * 109.47466 * 265.00360 * 8 7 3 12 12 C 1.50699 * 109.47337 * 174.99820 * 11 8 7 13 13 H 1.08001 * 119.99707 * 0.02562 * 12 11 8 14 14 C 1.37875 * 120.00057 * 179.97438 * 12 11 8 15 15 N 1.31514 * 120.00044 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99913 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46781 * 90.00477 * 16 14 12 18 18 H 1.48493 * 109.47360 * 210.00192 * 16 14 12 19 19 H 1.48493 * 109.47307 * 330.00942 * 16 14 12 20 20 H 1.08997 * 109.46961 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.46979 * 299.99907 * 1 2 3 22 22 H 1.09001 * 109.46914 * 59.99718 * 1 2 3 23 23 H 1.09002 * 109.47162 * 240.00305 * 2 1 3 24 24 H 1.08989 * 109.47293 * 120.00152 * 2 1 3 25 25 H 1.07997 * 126.75067 * 180.23793 * 6 5 4 26 26 H 0.96696 * 114.00036 * 60.00342 * 10 8 7 27 27 H 1.09002 * 109.47196 * 294.99972 * 11 8 7 28 28 H 1.09004 * 109.46881 * 54.99487 * 11 8 7 29 29 H 0.97003 * 120.00043 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2702 2.0921 -1.0431 5 7 2.6834 3.2597 -0.6952 6 6 2.7032 3.3317 0.6404 7 6 2.2827 2.1287 1.0965 8 6 2.1328 1.7085 2.5360 9 1 2.2090 0.6235 2.6075 10 8 3.1659 2.3111 3.3181 11 6 0.7678 2.1595 3.0595 12 6 0.5673 1.6340 4.4576 13 1 1.3367 1.0382 4.9260 14 6 -0.5979 1.9146 5.1391 15 7 -1.5347 2.6405 4.5688 16 14 -0.8467 1.2625 6.8718 17 1 -0.3286 2.2508 7.8517 18 1 -2.2947 1.0385 7.1133 19 1 -0.1146 -0.0199 7.0280 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 2.9987 4.1817 1.2374 26 1 3.1590 3.2779 3.3009 27 1 0.7249 3.2486 3.0711 28 1 -0.0168 1.7719 2.4096 29 1 -2.3547 2.8376 5.0481 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261125321.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:21 Heat of formation + Delta-G solvation = 33.508202 kcal Electronic energy + Delta-G solvation = -14118.582663 eV Core-core repulsion = 11657.775236 eV Total energy + Delta-G solvation = -2460.807428 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.89799 -36.95675 -35.20532 -33.00566 -31.20465 -30.45035 -29.01170 -25.15176 -24.16995 -22.37446 -21.52593 -20.03861 -17.62293 -16.35378 -15.93313 -15.64094 -15.04350 -14.63289 -13.97349 -13.73018 -13.47953 -12.78814 -12.39557 -12.07857 -11.81670 -11.51672 -11.19977 -10.96031 -10.88710 -10.63344 -10.49954 -10.29236 -9.78088 -9.39249 -9.29948 -8.54173 -8.51531 -6.13751 -4.17136 1.96240 2.65641 2.95019 3.25679 3.32563 3.35629 4.34917 4.58582 4.79845 4.93848 5.04736 5.17106 5.24390 5.26071 5.49351 5.64412 5.69281 5.99490 6.20827 6.31660 6.33931 6.52366 6.92990 7.32437 7.42203 7.82467 8.14558 8.24511 8.86614 8.89127 9.47875 10.97184 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.039167 B = 0.008959 C = 0.008197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.712074 B = 3124.480390 C = 3415.220165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.111 3.889 3 N -0.285 5.285 4 N -0.103 5.103 5 N -0.275 5.275 6 C -0.059 4.059 7 C -0.022 4.022 8 C 0.180 3.820 9 H 0.097 0.903 10 O -0.545 6.545 11 C 0.005 3.995 12 C -0.517 4.517 13 H 0.063 0.937 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.896 3.104 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.273 1.273 20 H 0.082 0.918 21 H 0.081 0.919 22 H 0.064 0.936 23 H 0.101 0.899 24 H 0.104 0.896 25 H 0.184 0.816 26 H 0.372 0.628 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.516 -4.368 -5.553 8.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.010 4.010 3 N -0.080 5.080 4 N -0.082 5.082 5 N -0.141 5.141 6 C -0.216 4.216 7 C -0.155 4.155 8 C 0.119 3.881 9 H 0.115 0.885 10 O -0.348 6.348 11 C -0.033 4.033 12 C -0.555 4.555 13 H 0.081 0.919 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.205 1.205 18 H -0.213 1.213 19 H -0.198 1.198 20 H 0.101 0.899 21 H 0.100 0.900 22 H 0.083 0.917 23 H 0.120 0.880 24 H 0.122 0.878 25 H 0.201 0.799 26 H 0.219 0.781 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.511 -4.904 -6.962 9.637 hybrid contribution -0.542 0.199 1.935 2.019 sum 3.969 -4.705 -5.027 7.947 Atomic orbital electron populations 1.22235 0.92707 1.03846 1.04495 1.22068 0.96782 0.76880 1.05257 1.47295 1.42976 1.13347 1.04366 1.78146 1.18382 0.99487 1.12225 1.74958 1.16001 1.10528 1.12602 1.23163 1.08250 0.98328 0.91814 1.23712 1.04480 0.93401 0.93914 1.20644 0.91072 0.97456 0.78942 0.88483 1.86538 1.53215 1.24504 1.70541 1.19773 0.88982 0.97744 0.96809 1.21074 1.02236 1.33228 0.98964 0.91921 1.25008 0.95923 0.95108 0.98285 1.69963 1.07506 1.38206 1.37662 0.86526 0.77176 0.79417 0.84504 1.20537 1.21282 1.19773 0.89935 0.90013 0.91697 0.88032 0.87781 0.79855 0.78095 0.95577 0.95558 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.16 0.38 -1.84 15 2 C 0.11 1.41 6.90 -4.04 -0.03 1.38 15 3 N -0.28 -4.81 3.34 -57.05 -0.19 -5.00 15 4 N -0.10 -1.93 13.17 60.35 0.79 -1.13 15 5 N -0.28 -5.31 12.41 30.24 0.38 -4.94 15 6 C -0.06 -1.04 11.44 -17.73 -0.20 -1.24 15 7 C -0.02 -0.40 6.05 -82.09 -0.50 -0.89 15 8 C 0.18 3.44 3.21 -27.89 -0.09 3.35 15 9 H 0.10 1.79 7.03 -51.93 -0.37 1.43 15 10 O -0.54 -10.19 12.98 -35.23 -0.46 -10.65 15 11 C 0.00 0.11 4.64 -27.89 -0.13 -0.02 15 12 C -0.52 -13.54 8.88 -34.44 -0.31 -13.84 15 13 H 0.06 1.63 7.74 -52.49 -0.41 1.23 15 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 15 15 N -0.89 -25.50 13.29 55.43 0.74 -24.76 15 16 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 15 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 20 H 0.08 0.81 8.14 -51.93 -0.42 0.39 15 21 H 0.08 1.30 6.65 -51.93 -0.35 0.95 15 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 23 H 0.10 1.03 8.14 -51.93 -0.42 0.61 15 24 H 0.10 1.18 7.05 -51.94 -0.37 0.81 15 25 H 0.18 2.69 7.70 -52.49 -0.40 2.29 15 26 H 0.37 5.77 8.32 45.56 0.38 6.15 15 27 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 28 H 0.03 0.65 6.65 -51.93 -0.35 0.30 15 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 LS Contribution 254.85 15.07 3.84 3.84 Total: -1.00 -31.42 254.85 -3.57 -34.99 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -2.68 Total: 3.56 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -0.97 Total: -11.63 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 1.72 Total: -35.83 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -0.46 Total: -10.65 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.42 -3.57 -34.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261125321.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.494 kcal (2) G-P(sol) polarization free energy of solvation -31.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds