Wall clock time and date at job start Mon Mar 30 2020 03:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.46988 * 2 1 4 4 N 1.28717 * 125.86897 * 269.97281 * 3 2 1 5 5 N 1.28641 * 110.18032 * 180.02562 * 4 3 2 6 6 C 1.33773 * 108.88068 * 359.77227 * 5 4 3 7 7 C 1.35311 * 125.86688 * 90.00377 * 3 2 1 8 8 C 1.50697 * 126.91350 * 359.93666 * 7 3 2 9 9 H 1.09001 * 109.46613 * 25.00463 * 8 7 3 10 10 O 1.42905 * 109.46996 * 145.00052 * 8 7 3 11 11 C 1.52997 * 109.47466 * 265.00360 * 8 7 3 12 12 C 1.50699 * 109.47337 * 174.99820 * 11 8 7 13 13 H 1.08001 * 119.99707 * 0.02562 * 12 11 8 14 14 C 1.37875 * 120.00057 * 179.97438 * 12 11 8 15 15 N 1.31514 * 120.00044 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99913 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46781 * 90.00477 * 16 14 12 18 18 H 1.48493 * 109.47360 * 210.00192 * 16 14 12 19 19 H 1.48493 * 109.47307 * 330.00942 * 16 14 12 20 20 H 1.08997 * 109.46961 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.46979 * 299.99907 * 1 2 3 22 22 H 1.09001 * 109.46914 * 59.99718 * 1 2 3 23 23 H 1.09002 * 109.47162 * 240.00305 * 2 1 3 24 24 H 1.08989 * 109.47293 * 120.00152 * 2 1 3 25 25 H 1.07997 * 126.75067 * 180.23793 * 6 5 4 26 26 H 0.96696 * 114.00036 * 60.00342 * 10 8 7 27 27 H 1.09002 * 109.47196 * 294.99972 * 11 8 7 28 28 H 1.09004 * 109.46881 * 54.99487 * 11 8 7 29 29 H 0.97003 * 120.00043 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2702 2.0921 -1.0431 5 7 2.6834 3.2597 -0.6952 6 6 2.7032 3.3317 0.6404 7 6 2.2827 2.1287 1.0965 8 6 2.1328 1.7085 2.5360 9 1 2.2090 0.6235 2.6075 10 8 3.1659 2.3111 3.3181 11 6 0.7678 2.1595 3.0595 12 6 0.5673 1.6340 4.4576 13 1 1.3367 1.0382 4.9260 14 6 -0.5979 1.9146 5.1391 15 7 -1.5347 2.6405 4.5688 16 14 -0.8467 1.2625 6.8718 17 1 -0.3286 2.2508 7.8517 18 1 -2.2947 1.0385 7.1133 19 1 -0.1146 -0.0199 7.0280 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 2.9987 4.1817 1.2374 26 1 3.1590 3.2779 3.3009 27 1 0.7249 3.2486 3.0711 28 1 -0.0168 1.7719 2.4096 29 1 -2.3547 2.8376 5.0481 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261125321.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:20 Heat of formation + Delta-G solvation = 9.956270 kcal Electronic energy + Delta-G solvation = -14119.603952 eV Core-core repulsion = 11657.775236 eV Total energy + Delta-G solvation = -2461.828716 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.27989 -38.51611 -36.42299 -34.98387 -32.72837 -31.65484 -30.77479 -26.91907 -25.37298 -24.02101 -23.00791 -21.45085 -19.11066 -18.12920 -17.29192 -17.25006 -16.48325 -16.35000 -15.45079 -15.09804 -14.86331 -14.30637 -13.88686 -13.39377 -13.19758 -13.05271 -12.80212 -12.71202 -12.49651 -12.24012 -12.03910 -11.91872 -11.25823 -11.14032 -10.93450 -10.57667 -10.04050 -8.19537 -6.29146 0.56418 1.43452 1.44028 1.45635 1.53139 1.55838 2.42881 3.14714 3.32066 3.56271 3.68034 3.87299 3.93671 4.07144 4.25664 4.41801 4.62312 4.66487 4.71735 4.92638 5.10517 5.17463 5.43013 5.53671 5.64137 5.77482 6.17712 6.80224 6.87527 7.40070 7.45856 8.91654 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.039167 B = 0.008959 C = 0.008197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.712074 B = 3124.480390 C = 3415.220165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.099 3.901 3 N -0.277 5.277 4 N -0.113 5.113 5 N -0.300 5.300 6 C -0.059 4.059 7 C -0.035 4.035 8 C 0.200 3.800 9 H 0.107 0.893 10 O -0.551 6.551 11 C 0.012 3.988 12 C -0.525 4.525 13 H 0.064 0.936 14 C 0.006 3.994 15 N -0.932 5.932 16 Si 0.960 3.040 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.262 1.262 20 H 0.115 0.885 21 H 0.044 0.956 22 H 0.058 0.942 23 H 0.132 0.868 24 H 0.121 0.879 25 H 0.208 0.792 26 H 0.385 0.615 27 H 0.003 0.997 28 H 0.008 0.992 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.211 -5.562 -5.161 9.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.020 4.020 3 N -0.073 5.073 4 N -0.092 5.092 5 N -0.165 5.165 6 C -0.217 4.217 7 C -0.168 4.168 8 C 0.139 3.861 9 H 0.124 0.876 10 O -0.356 6.356 11 C -0.025 4.025 12 C -0.563 4.563 13 H 0.082 0.918 14 C -0.192 4.192 15 N -0.573 5.573 16 Si 0.785 3.215 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.186 1.186 20 H 0.134 0.866 21 H 0.063 0.937 22 H 0.077 0.923 23 H 0.151 0.849 24 H 0.139 0.861 25 H 0.225 0.775 26 H 0.235 0.765 27 H 0.021 0.979 28 H 0.026 0.974 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.220 -6.106 -6.584 10.387 hybrid contribution -0.765 0.562 1.778 2.015 sum 4.456 -5.544 -4.807 8.584 Atomic orbital electron populations 1.22180 0.92821 1.05315 1.02247 1.22531 0.96626 0.75194 1.07650 1.47650 1.41662 1.14385 1.03573 1.78077 1.18651 0.99677 1.12787 1.74939 1.17133 1.11117 1.13356 1.23658 1.07347 0.99056 0.91628 1.23543 1.05668 0.93939 0.93699 1.20203 0.88683 0.97821 0.79435 0.87580 1.86505 1.52622 1.25892 1.70551 1.19608 0.91248 0.96001 0.95693 1.21432 1.02082 1.32723 1.00112 0.91779 1.25838 0.95793 0.95395 1.02213 1.70086 1.08074 1.39755 1.39337 0.85516 0.77060 0.79157 0.79740 1.20207 1.21198 1.18609 0.86646 0.93668 0.92326 0.84949 0.86141 0.77500 0.76549 0.97913 0.97388 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.05 10.24 71.98 0.74 -3.32 15 2 C 0.10 2.30 6.90 86.38 0.60 2.90 15 3 N -0.28 -8.97 3.34 -334.40 -1.12 -10.09 15 4 N -0.11 -4.09 13.17 37.02 0.49 -3.61 15 5 N -0.30 -11.37 12.41 -58.25 -0.72 -12.09 15 6 C -0.06 -2.05 11.44 83.73 0.96 -1.10 15 7 C -0.03 -1.22 6.05 41.36 0.25 -0.97 15 8 C 0.20 7.43 3.21 29.85 0.10 7.53 15 9 H 0.11 3.73 7.03 -2.39 -0.02 3.72 15 10 O -0.55 -19.73 12.98 -148.98 -1.93 -21.66 15 11 C 0.01 0.58 4.64 29.85 0.14 0.72 15 12 C -0.53 -27.31 8.88 25.60 0.23 -27.08 15 13 H 0.06 3.26 7.74 -2.91 -0.02 3.23 15 14 C 0.01 0.31 5.46 84.65 0.46 0.77 15 15 N -0.93 -53.68 13.29 21.45 0.28 -53.40 15 16 Si 0.96 42.06 29.54 68.60 2.03 44.09 15 17 H -0.28 -11.91 7.11 99.48 0.71 -11.20 15 18 H -0.29 -12.41 7.11 99.48 0.71 -11.71 15 19 H -0.26 -10.92 7.11 99.48 0.71 -10.21 15 20 H 0.12 2.00 8.14 -2.39 -0.02 1.98 15 21 H 0.04 1.44 6.65 -2.39 -0.02 1.42 15 22 H 0.06 1.47 8.14 -2.39 -0.02 1.45 15 23 H 0.13 2.28 8.14 -2.39 -0.02 2.26 15 24 H 0.12 2.42 7.05 -2.39 -0.02 2.40 15 25 H 0.21 5.79 7.70 -2.91 -0.02 5.77 15 26 H 0.39 11.41 8.32 -74.06 -0.62 10.79 15 27 H 0.00 0.13 8.14 -2.39 -0.02 0.11 15 28 H 0.01 0.40 6.65 -2.38 -0.02 0.39 15 29 H 0.26 14.37 8.31 -92.71 -0.77 13.60 15 Total: -1.00 -66.33 254.85 3.04 -63.29 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.55 Total: 14.01 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: 3.47 Total: -20.55 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -1.07 Total: -79.18 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -1.93 Total: -21.66 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -66.33 3.04 -63.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261125321.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.248 kcal (2) G-P(sol) polarization free energy of solvation -66.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds