Wall clock time and date at job start Mon Mar 30 2020 02:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47720 * 2 1 4 4 N 1.46502 * 109.47372 * 120.00453 * 2 1 3 5 5 C 1.33880 * 122.75801 * 299.99723 * 4 2 1 6 6 O 1.21225 * 125.39781 * 359.96205 * 5 4 2 7 7 C 1.51313 * 109.20401 * 180.02562 * 5 4 2 8 8 C 1.54225 * 103.55862 * 359.97438 * 7 5 4 9 9 H 1.08993 * 110.73986 * 118.58154 * 8 7 5 10 10 C 1.50700 * 110.60654 * 241.48755 * 8 7 5 11 11 H 1.07997 * 120.00540 * 108.87500 * 10 8 7 12 12 C 1.37879 * 119.99589 * 289.13989 * 10 8 7 13 13 N 1.31522 * 119.99743 * 184.61526 * 12 10 8 14 14 Si 1.86802 * 120.00157 * 4.61640 * 12 10 8 15 15 H 1.48502 * 109.46778 * 94.89029 * 14 12 10 16 16 H 1.48494 * 109.47091 * 214.88838 * 14 12 10 17 17 H 1.48497 * 109.47140 * 334.88819 * 14 12 10 18 18 C 1.33876 * 122.76526 * 119.99145 * 4 2 1 19 19 O 1.21220 * 125.39460 * 359.97438 * 18 4 2 20 20 H 1.09007 * 109.46418 * 300.00036 * 1 2 3 21 21 H 1.08999 * 109.46842 * 59.99523 * 1 2 3 22 22 H 1.08992 * 109.47419 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46899 * 239.99758 * 2 1 3 24 24 H 1.09007 * 109.47104 * 300.00388 * 3 2 1 25 25 H 1.09000 * 109.46716 * 60.00015 * 3 2 1 26 26 H 1.08995 * 109.47495 * 180.02562 * 3 2 1 27 27 H 1.09000 * 110.60493 * 241.47875 * 7 5 4 28 28 H 1.09004 * 110.60789 * 118.51823 * 7 5 4 29 29 H 0.97004 * 119.99252 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7292 -0.2817 2.4377 6 8 1.0490 0.6815 2.7191 7 6 2.3872 -1.2112 3.4339 8 6 3.1140 -2.2396 2.5435 9 1 4.1894 -2.2098 2.7183 10 6 2.5767 -3.6262 2.7877 11 1 1.9726 -4.1115 2.0354 12 6 2.8518 -4.2731 3.9738 13 7 2.4605 -5.5162 4.1510 14 14 3.7801 -3.3839 5.3292 15 1 2.8114 -2.7902 6.2854 16 1 4.6546 -4.3475 6.0446 17 1 4.6123 -2.3071 4.7349 18 6 2.7905 -1.7828 1.1376 19 8 3.1700 -2.3206 0.1197 20 1 -0.3632 0.5139 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.6768 1.9563 -0.8900 25 1 1.6768 1.9562 0.8900 26 1 3.1301 1.4424 -0.0005 27 1 1.6371 -1.7029 4.0533 28 1 3.1007 -0.6672 4.0530 29 1 2.6538 -5.9711 4.9856 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261126502.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:42 Heat of formation + Delta-G solvation = -72.471509 kcal Electronic energy + Delta-G solvation = -14459.760158 eV Core-core repulsion = 11962.064354 eV Total energy + Delta-G solvation = -2497.695804 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.30485 -37.87480 -35.52291 -34.94559 -32.64464 -30.38325 -27.13344 -26.42129 -23.89437 -22.50320 -20.71286 -18.56528 -17.23229 -16.66123 -15.82394 -15.56847 -14.55344 -14.01121 -13.96170 -13.61488 -13.33211 -13.05947 -12.76136 -12.61127 -12.18163 -11.98112 -11.34491 -11.22027 -11.17770 -10.95718 -10.83218 -10.08670 -9.70848 -9.44046 -9.23357 -9.11503 -8.78954 -6.30801 -4.36236 2.22576 3.08429 3.14391 3.19628 3.26370 3.43489 4.19406 4.76253 4.93270 5.08705 5.15428 5.24873 5.39218 5.59452 5.66492 5.72214 5.86042 5.91532 5.93949 6.17668 6.29650 6.37625 6.42413 6.76548 7.26771 7.49793 7.98334 8.18812 8.51125 8.71891 9.24764 10.80723 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.043570 B = 0.010989 C = 0.010008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.496021 B = 2547.448753 C = 2797.211254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.119 3.881 3 C -0.164 4.164 4 N -0.574 5.574 5 C 0.538 3.462 6 O -0.508 6.508 7 C -0.175 4.175 8 C -0.012 4.012 9 H 0.083 0.917 10 C -0.515 4.515 11 H 0.082 0.918 12 C 0.082 3.918 13 N -0.882 5.882 14 Si 0.871 3.129 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.259 1.259 18 C 0.542 3.458 19 O -0.495 6.495 20 H 0.072 0.928 21 H 0.067 0.933 22 H 0.060 0.940 23 H 0.099 0.901 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.121 0.879 28 H 0.097 0.903 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.269 10.828 -3.286 11.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.017 3.983 3 C -0.222 4.222 4 N -0.318 5.318 5 C 0.330 3.670 6 O -0.383 6.383 7 C -0.215 4.215 8 C -0.033 4.033 9 H 0.101 0.899 10 C -0.552 4.552 11 H 0.100 0.900 12 C -0.123 4.123 13 N -0.518 5.518 14 Si 0.697 3.303 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.184 1.184 18 C 0.334 3.666 19 O -0.367 6.367 20 H 0.091 0.909 21 H 0.086 0.914 22 H 0.079 0.921 23 H 0.117 0.883 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.139 0.861 28 H 0.115 0.885 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.432 10.871 -3.594 11.458 hybrid contribution 0.387 0.298 0.732 0.880 sum -0.045 11.169 -2.862 11.530 Atomic orbital electron populations 1.22141 0.94095 1.02843 1.03213 1.21259 0.95299 0.93611 0.88093 1.22142 1.01309 0.95366 1.03352 1.47043 1.47636 1.28528 1.08559 1.21038 0.78327 0.83810 0.83855 1.90626 1.37530 1.27718 1.82410 1.23244 1.02172 0.97230 0.98833 1.20125 0.99334 0.96965 0.86918 0.89896 1.20438 1.34545 0.96048 1.04184 0.89965 1.24922 0.94698 0.94508 0.98137 1.69879 1.45378 1.10454 1.26080 0.86985 0.80667 0.80171 0.82482 1.19524 1.20900 1.18357 1.21449 0.74832 0.76963 0.93384 1.90621 1.52514 1.56802 1.36758 0.90859 0.91375 0.92103 0.88290 0.91289 0.90856 0.92471 0.86109 0.88478 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 9.17 37.16 0.34 -2.01 15 2 C 0.12 1.86 3.31 -67.93 -0.22 1.63 15 3 C -0.16 -2.17 9.17 37.16 0.34 -1.83 15 4 N -0.57 -10.70 2.48 -108.25 -0.27 -10.97 15 5 C 0.54 10.17 7.42 -11.08 -0.08 10.09 15 6 O -0.51 -9.93 14.82 5.61 0.08 -9.85 15 7 C -0.17 -3.36 4.79 -26.94 -0.13 -3.49 15 8 C -0.01 -0.26 2.46 -91.98 -0.23 -0.48 15 9 H 0.08 1.76 6.88 -51.93 -0.36 1.40 15 10 C -0.51 -13.57 8.90 -34.44 -0.31 -13.88 15 11 H 0.08 2.44 8.02 -52.49 -0.42 2.02 15 12 C 0.08 2.18 5.45 -17.82 -0.10 2.08 15 13 N -0.88 -25.27 13.96 55.43 0.77 -24.50 15 14 Si 0.87 19.14 25.61 -169.99 -4.35 14.78 15 15 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 17 H -0.26 -5.23 6.11 56.52 0.35 -4.88 15 18 C 0.54 11.61 7.37 -11.08 -0.08 11.53 15 19 O -0.50 -11.70 17.23 5.61 0.10 -11.60 15 20 H 0.07 1.13 6.65 -51.92 -0.35 0.79 15 21 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 22 H 0.06 0.92 8.14 -51.93 -0.42 0.49 15 23 H 0.10 1.54 7.41 -51.93 -0.38 1.16 15 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 25 H 0.07 1.06 6.64 -51.93 -0.34 0.71 15 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 15 27 H 0.12 2.40 7.17 -51.93 -0.37 2.03 15 28 H 0.10 1.64 7.69 -51.93 -0.40 1.24 15 29 H 0.27 7.18 8.31 -40.82 -0.34 6.84 15 LS Contribution 243.80 15.07 3.67 3.67 Total: -1.00 -29.33 243.80 -3.97 -33.30 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -3.51 Total: 1.51 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -0.47 Total: 3.65 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.51 Total: -35.47 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: 0.18 Total: -21.45 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.35 Total: 14.78 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.33 -3.97 -33.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126502.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.170 kcal (2) G-P(sol) polarization free energy of solvation -29.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds