Wall clock time and date at job start Mon Mar 30 2020 02:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47720 * 2 1 4 4 N 1.46502 * 109.47372 * 120.00453 * 2 1 3 5 5 C 1.33880 * 122.75801 * 299.99723 * 4 2 1 6 6 O 1.21225 * 125.39781 * 359.96205 * 5 4 2 7 7 C 1.51313 * 109.20401 * 180.02562 * 5 4 2 8 8 C 1.54225 * 103.55862 * 359.97438 * 7 5 4 9 9 H 1.08993 * 110.73986 * 118.58154 * 8 7 5 10 10 C 1.50700 * 110.60654 * 241.48755 * 8 7 5 11 11 H 1.07997 * 120.00540 * 108.87500 * 10 8 7 12 12 C 1.37879 * 119.99589 * 289.13989 * 10 8 7 13 13 N 1.31522 * 119.99743 * 184.61526 * 12 10 8 14 14 Si 1.86802 * 120.00157 * 4.61640 * 12 10 8 15 15 H 1.48502 * 109.46778 * 94.89029 * 14 12 10 16 16 H 1.48494 * 109.47091 * 214.88838 * 14 12 10 17 17 H 1.48497 * 109.47140 * 334.88819 * 14 12 10 18 18 C 1.33876 * 122.76526 * 119.99145 * 4 2 1 19 19 O 1.21220 * 125.39460 * 359.97438 * 18 4 2 20 20 H 1.09007 * 109.46418 * 300.00036 * 1 2 3 21 21 H 1.08999 * 109.46842 * 59.99523 * 1 2 3 22 22 H 1.08992 * 109.47419 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46899 * 239.99758 * 2 1 3 24 24 H 1.09007 * 109.47104 * 300.00388 * 3 2 1 25 25 H 1.09000 * 109.46716 * 60.00015 * 3 2 1 26 26 H 1.08995 * 109.47495 * 180.02562 * 3 2 1 27 27 H 1.09000 * 110.60493 * 241.47875 * 7 5 4 28 28 H 1.09004 * 110.60789 * 118.51823 * 7 5 4 29 29 H 0.97004 * 119.99252 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7292 -0.2817 2.4377 6 8 1.0490 0.6815 2.7191 7 6 2.3872 -1.2112 3.4339 8 6 3.1140 -2.2396 2.5435 9 1 4.1894 -2.2098 2.7183 10 6 2.5767 -3.6262 2.7877 11 1 1.9726 -4.1115 2.0354 12 6 2.8518 -4.2731 3.9738 13 7 2.4605 -5.5162 4.1510 14 14 3.7801 -3.3839 5.3292 15 1 2.8114 -2.7902 6.2854 16 1 4.6546 -4.3475 6.0446 17 1 4.6123 -2.3071 4.7349 18 6 2.7905 -1.7828 1.1376 19 8 3.1700 -2.3206 0.1197 20 1 -0.3632 0.5139 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.6768 1.9563 -0.8900 25 1 1.6768 1.9562 0.8900 26 1 3.1301 1.4424 -0.0005 27 1 1.6371 -1.7029 4.0533 28 1 3.1007 -0.6672 4.0530 29 1 2.6538 -5.9711 4.9856 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261126502.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:42 Heat of formation + Delta-G solvation = -92.480607 kcal Electronic energy + Delta-G solvation = -14460.627818 eV Core-core repulsion = 11962.064354 eV Total energy + Delta-G solvation = -2498.563464 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.87431 -39.53138 -36.99679 -36.59635 -34.49517 -32.00188 -28.22965 -28.17194 -25.70210 -23.89154 -22.35591 -20.10665 -19.14289 -18.18432 -17.43528 -17.22849 -16.28458 -15.64838 -15.20468 -15.18644 -14.92916 -14.73498 -14.21879 -14.06185 -13.67239 -13.09529 -12.97067 -12.82213 -12.56399 -12.40357 -12.28956 -11.76878 -11.52696 -11.14256 -10.81236 -10.75236 -10.72974 -8.34605 -6.47742 0.60610 1.42971 1.44409 1.53264 1.64057 1.84967 2.34780 2.95735 3.34205 3.56367 3.88877 3.98675 4.01029 4.12208 4.33079 4.34707 4.66153 4.73790 4.80499 4.81329 5.00165 5.08138 5.19768 5.21293 5.36799 5.91493 6.11974 6.38900 6.57587 6.89766 7.18649 8.81121 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.043570 B = 0.010989 C = 0.010008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.496021 B = 2547.448753 C = 2797.211254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.107 3.893 3 C -0.154 4.154 4 N -0.571 5.571 5 C 0.543 3.457 6 O -0.509 6.509 7 C -0.169 4.169 8 C -0.016 4.016 9 H 0.099 0.901 10 C -0.524 4.524 11 H 0.027 0.973 12 C 0.026 3.974 13 N -0.938 5.938 14 Si 0.938 3.062 15 H -0.253 1.253 16 H -0.289 1.289 17 H -0.222 1.222 18 C 0.543 3.457 19 O -0.525 6.525 20 H 0.062 0.938 21 H 0.102 0.898 22 H 0.043 0.957 23 H 0.097 0.903 24 H 0.100 0.900 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.115 0.885 28 H 0.134 0.866 29 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.446 13.515 -2.609 13.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.006 3.994 3 C -0.212 4.212 4 N -0.313 5.313 5 C 0.335 3.665 6 O -0.384 6.384 7 C -0.208 4.208 8 C -0.037 4.037 9 H 0.116 0.884 10 C -0.562 4.562 11 H 0.046 0.954 12 C -0.174 4.174 13 N -0.575 5.575 14 Si 0.759 3.241 15 H -0.177 1.177 16 H -0.215 1.215 17 H -0.144 1.144 18 C 0.335 3.665 19 O -0.399 6.399 20 H 0.081 0.919 21 H 0.121 0.879 22 H 0.063 0.937 23 H 0.115 0.885 24 H 0.118 0.882 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.133 0.867 28 H 0.152 0.848 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.260 13.606 -2.937 13.922 hybrid contribution 0.086 -0.591 0.410 0.724 sum 0.346 13.015 -2.527 13.263 Atomic orbital electron populations 1.22114 0.93050 1.02138 1.04384 1.21632 0.96207 0.94876 0.86661 1.22089 1.01351 0.93381 1.04379 1.47021 1.46807 1.27774 1.09740 1.20934 0.78160 0.83672 0.83755 1.90637 1.37531 1.27831 1.82385 1.23141 1.02541 0.96488 0.98652 1.20069 1.00253 0.95206 0.88201 0.88378 1.20489 1.34187 0.98331 1.03190 0.95438 1.25905 0.95571 0.95041 1.00877 1.70041 1.47535 1.12761 1.27180 0.85919 0.79734 0.79698 0.78771 1.17703 1.21527 1.14435 1.21351 0.74930 0.77425 0.92838 1.90600 1.53908 1.57857 1.37575 0.91922 0.87915 0.93735 0.88489 0.88156 0.91863 0.92359 0.86694 0.84807 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.25 9.17 71.98 0.66 -3.59 15 2 C 0.11 3.14 3.31 44.99 0.15 3.29 15 3 C -0.15 -3.62 9.17 71.98 0.66 -2.96 15 4 N -0.57 -20.53 2.48 -734.24 -1.82 -22.35 15 5 C 0.54 19.32 7.42 87.99 0.65 19.97 15 6 O -0.51 -18.56 14.82 -2.86 -0.04 -18.60 15 7 C -0.17 -6.01 4.79 30.46 0.15 -5.86 15 8 C -0.02 -0.67 2.46 -11.68 -0.03 -0.70 15 9 H 0.10 3.90 6.88 -2.39 -0.02 3.89 15 10 C -0.52 -28.31 8.90 25.60 0.23 -28.09 15 11 H 0.03 1.73 8.02 -2.91 -0.02 1.70 15 12 C 0.03 1.38 5.45 84.65 0.46 1.84 15 13 N -0.94 -55.38 13.96 21.45 0.30 -55.08 15 14 Si 0.94 37.94 25.61 68.60 1.76 39.70 15 15 H -0.25 -9.55 7.11 99.48 0.71 -8.84 15 16 H -0.29 -11.97 7.11 99.48 0.71 -11.26 15 17 H -0.22 -7.61 6.11 99.48 0.61 -7.00 15 18 C 0.54 23.06 7.37 87.99 0.65 23.70 15 19 O -0.52 -25.11 17.23 -2.84 -0.05 -25.16 15 20 H 0.06 1.81 6.65 -2.38 -0.02 1.80 15 21 H 0.10 2.01 8.14 -2.39 -0.02 1.99 15 22 H 0.04 1.31 8.14 -2.39 -0.02 1.29 15 23 H 0.10 2.90 7.41 -2.38 -0.02 2.89 15 24 H 0.10 1.73 8.14 -2.38 -0.02 1.71 15 25 H 0.06 1.63 6.64 -2.39 -0.02 1.62 15 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 15 27 H 0.11 4.31 7.17 -2.39 -0.02 4.30 15 28 H 0.13 3.82 7.69 -2.39 -0.02 3.80 15 29 H 0.27 14.91 8.31 -92.71 -0.77 14.14 15 Total: -1.00 -65.29 243.80 4.77 -60.52 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 1.05 Total: 13.35 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 3.58 Total: 7.61 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -1.52 Total: -77.43 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -0.09 Total: -43.75 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 1.76 Total: 39.70 kcal Total: -65.29 4.77 -60.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126502.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.962 kcal (2) G-P(sol) polarization free energy of solvation -65.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds