Wall clock time and date at job start Mon Mar 30 2020 02:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 5 5 C 1.33877 * 122.75867 * 59.71163 * 4 2 1 6 6 O 1.21224 * 125.39791 * 359.97438 * 5 4 2 7 7 C 1.51317 * 109.20422 * 179.84337 * 5 4 2 8 8 C 1.54225 * 103.55490 * 0.38801 * 7 5 4 9 9 H 1.09006 * 110.60310 * 241.26274 * 8 7 5 10 10 C 1.50698 * 110.60931 * 118.29553 * 8 7 5 11 11 H 1.08003 * 119.99934 * 4.40634 * 10 8 7 12 12 C 1.37876 * 120.00169 * 184.40687 * 10 8 7 13 13 N 1.31516 * 119.99708 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 120.00109 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46826 * 60.00475 * 14 12 10 16 16 H 1.48501 * 109.47223 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47090 * 300.00136 * 14 12 10 18 18 C 1.33873 * 122.76627 * 239.99899 * 4 2 1 19 19 O 1.21225 * 125.39143 * 359.97438 * 18 4 2 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 23 23 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.08999 * 110.79384 * 241.77554 * 7 5 4 28 28 H 1.09001 * 110.54797 * 118.87358 * 7 5 4 29 29 H 0.97002 * 120.00116 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 1.7246 -0.2850 -2.4376 6 8 1.0388 0.6742 -2.7191 7 6 2.3868 -1.2116 -3.4339 8 6 3.1137 -2.2397 -2.5434 9 1 4.1890 -2.2075 -2.7196 10 6 2.5763 -3.6264 -2.7870 11 1 1.8381 -3.7917 -3.5578 12 6 3.0269 -4.6840 -2.0259 13 7 3.9255 -4.4826 -1.0869 14 14 2.3602 -6.4027 -2.3274 15 1 2.6597 -6.8119 -3.7231 16 1 3.0000 -7.3545 -1.3839 17 1 0.8906 -6.4080 -2.1144 18 6 2.7906 -1.7827 -1.1376 19 8 3.1711 -2.3199 -0.1197 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.8934 -0.5137 0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1003 -0.6679 -4.0530 28 1 1.6383 -1.7035 -4.0550 29 1 4.2423 -5.2266 -0.5511 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261126503.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:46 Heat of formation + Delta-G solvation = -70.103639 kcal Electronic energy + Delta-G solvation = -14568.376125 eV Core-core repulsion = 12070.783000 eV Total energy + Delta-G solvation = -2497.593126 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.87980 -37.38661 -35.18726 -34.41001 -32.53494 -29.90217 -26.95265 -26.03728 -23.61816 -22.20431 -20.58080 -18.29109 -16.82859 -16.22369 -15.52525 -14.97120 -14.58065 -13.82445 -13.70049 -13.26662 -12.94097 -12.69228 -12.40126 -12.29170 -11.96248 -11.79710 -11.03599 -11.02245 -10.90426 -10.80848 -10.66457 -10.11326 -9.53058 -9.17285 -8.82269 -8.68407 -8.47370 -6.10399 -4.24472 2.62153 3.25855 3.32139 3.33033 3.49882 3.96658 4.34474 5.02483 5.18216 5.32731 5.38185 5.52473 5.76068 5.81904 5.84971 5.99355 6.04693 6.09655 6.14390 6.41799 6.48303 6.58134 6.76643 7.20085 7.71340 7.86006 8.05284 8.34678 8.72305 9.18836 9.39910 10.91467 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.042820 B = 0.010851 C = 0.010065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.737107 B = 2579.835891 C = 2781.337899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.119 3.881 3 C -0.162 4.162 4 N -0.577 5.577 5 C 0.533 3.467 6 O -0.524 6.524 7 C -0.156 4.156 8 C 0.028 3.972 9 H 0.071 0.929 10 C -0.540 4.540 11 H 0.069 0.931 12 C 0.068 3.932 13 N -0.835 5.835 14 Si 0.897 3.103 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.514 3.486 19 O -0.452 6.452 20 H 0.057 0.943 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.095 0.905 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.923 6.626 0.006 7.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.017 3.983 3 C -0.220 4.220 4 N -0.323 5.323 5 C 0.324 3.676 6 O -0.400 6.400 7 C -0.195 4.195 8 C 0.007 3.993 9 H 0.089 0.911 10 C -0.577 4.577 11 H 0.087 0.913 12 C -0.141 4.141 13 N -0.467 5.467 14 Si 0.724 3.276 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.202 1.202 18 C 0.304 3.696 19 O -0.318 6.318 20 H 0.076 0.924 21 H 0.090 0.910 22 H 0.082 0.918 23 H 0.114 0.886 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.910 6.712 0.653 7.344 hybrid contribution -0.420 -0.978 0.093 1.068 sum -3.330 5.734 0.746 6.673 Atomic orbital electron populations 1.22125 0.94677 1.02479 1.02826 1.21145 0.94806 0.93435 0.88954 1.22118 1.01255 0.95669 1.02918 1.47442 1.48129 1.29010 1.07709 1.21002 0.78433 0.83765 0.84417 1.90598 1.38239 1.28411 1.82783 1.22636 1.01467 0.97124 0.98283 1.19537 0.98642 0.94823 0.86329 0.91143 1.20701 1.26871 0.89311 1.20828 0.91268 1.25133 0.94839 0.99496 0.94630 1.70116 1.26827 1.31627 1.18155 0.86580 0.79257 0.83575 0.78214 1.19867 1.21102 1.20163 1.22518 0.75670 0.76500 0.94866 1.90661 1.50447 1.54378 1.36324 0.92390 0.91036 0.91804 0.88646 0.92569 0.91068 0.91718 0.88595 0.87430 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.17 37.16 0.34 -2.26 15 2 C 0.12 2.11 3.31 -67.93 -0.22 1.88 15 3 C -0.16 -2.45 9.18 37.16 0.34 -2.10 15 4 N -0.58 -11.90 2.48 -108.26 -0.27 -12.17 15 5 C 0.53 10.62 7.42 -11.08 -0.08 10.54 15 6 O -0.52 -10.76 14.82 5.61 0.08 -10.67 15 7 C -0.16 -2.96 6.66 -26.94 -0.18 -3.14 15 8 C 0.03 0.65 3.04 -91.98 -0.28 0.37 15 9 H 0.07 1.70 8.14 -51.93 -0.42 1.28 15 10 C -0.54 -13.93 8.59 -34.44 -0.30 -14.23 15 11 H 0.07 1.71 7.40 -52.48 -0.39 1.32 15 12 C 0.07 1.82 5.30 -17.82 -0.09 1.73 15 13 N -0.83 -23.76 10.83 55.43 0.60 -23.16 15 14 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 15 15 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 16 H -0.29 -6.57 7.11 56.52 0.40 -6.16 15 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 18 C 0.51 12.41 7.26 -11.09 -0.08 12.33 15 19 O -0.45 -12.37 14.74 5.61 0.08 -12.29 15 20 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 21 H 0.07 1.21 6.62 -51.93 -0.34 0.86 15 22 H 0.06 0.83 8.14 -51.93 -0.42 0.40 15 23 H 0.10 1.75 7.41 -51.93 -0.38 1.37 15 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.07 1.14 6.66 -51.93 -0.35 0.80 15 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 27 H 0.10 1.55 8.14 -51.93 -0.42 1.13 15 28 H 0.11 1.98 7.47 -51.93 -0.39 1.59 15 29 H 0.27 7.27 8.31 -40.82 -0.34 6.93 15 LS Contribution 246.37 15.07 3.71 3.71 Total: -1.00 -29.74 246.37 -4.89 -34.63 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -3.52 Total: -0.75 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -0.55 Total: 5.12 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.33 Total: -35.33 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: 0.17 Total: -22.96 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.74 -4.89 -34.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126503.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.476 kcal (2) G-P(sol) polarization free energy of solvation -29.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds