Wall clock time and date at job start Mon Mar 30 2020 02:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 5 5 C 1.33877 * 122.75867 * 59.71163 * 4 2 1 6 6 O 1.21224 * 125.39791 * 359.97438 * 5 4 2 7 7 C 1.51317 * 109.20422 * 179.84337 * 5 4 2 8 8 C 1.54225 * 103.55490 * 0.38801 * 7 5 4 9 9 H 1.09006 * 110.60310 * 241.26274 * 8 7 5 10 10 C 1.50698 * 110.60931 * 118.29553 * 8 7 5 11 11 H 1.08003 * 119.99934 * 4.40634 * 10 8 7 12 12 C 1.37876 * 120.00169 * 184.40687 * 10 8 7 13 13 N 1.31516 * 119.99708 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 120.00109 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46826 * 60.00475 * 14 12 10 16 16 H 1.48501 * 109.47223 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47090 * 300.00136 * 14 12 10 18 18 C 1.33873 * 122.76627 * 239.99899 * 4 2 1 19 19 O 1.21225 * 125.39143 * 359.97438 * 18 4 2 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 23 23 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.08999 * 110.79384 * 241.77554 * 7 5 4 28 28 H 1.09001 * 110.54797 * 118.87358 * 7 5 4 29 29 H 0.97002 * 120.00116 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 1.7246 -0.2850 -2.4376 6 8 1.0388 0.6742 -2.7191 7 6 2.3868 -1.2116 -3.4339 8 6 3.1137 -2.2397 -2.5434 9 1 4.1890 -2.2075 -2.7196 10 6 2.5763 -3.6264 -2.7870 11 1 1.8381 -3.7917 -3.5578 12 6 3.0269 -4.6840 -2.0259 13 7 3.9255 -4.4826 -1.0869 14 14 2.3602 -6.4027 -2.3274 15 1 2.6597 -6.8119 -3.7231 16 1 3.0000 -7.3545 -1.3839 17 1 0.8906 -6.4080 -2.1144 18 6 2.7906 -1.7827 -1.1376 19 8 3.1711 -2.3199 -0.1197 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.8934 -0.5137 0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1003 -0.6679 -4.0530 28 1 1.6383 -1.7035 -4.0550 29 1 4.2423 -5.2266 -0.5511 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261126503.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:45 Heat of formation + Delta-G solvation = -88.801426 kcal Electronic energy + Delta-G solvation = -14569.186922 eV Core-core repulsion = 12070.783000 eV Total energy + Delta-G solvation = -2498.403923 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.56341 -39.17564 -36.76637 -36.20540 -34.39436 -31.57310 -28.20258 -27.86673 -25.49100 -23.68459 -22.33970 -19.92410 -18.71531 -17.87531 -17.22852 -16.76560 -16.42041 -15.45714 -15.11398 -14.85604 -14.67424 -14.44646 -14.06440 -13.89393 -13.49884 -13.05700 -12.79151 -12.59060 -12.47047 -12.33958 -12.30597 -11.92230 -11.39353 -10.82913 -10.68778 -10.46028 -10.39242 -8.11982 -6.30866 0.92365 1.45001 1.45913 1.53707 1.89720 2.18182 2.44257 3.16811 3.52760 3.84767 4.05052 4.10344 4.16051 4.31139 4.46890 4.55052 4.67019 4.80040 4.82252 5.05807 5.09268 5.21599 5.25996 5.36514 5.68845 6.00227 6.24051 6.66463 6.76649 7.35150 7.38243 8.89341 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.042820 B = 0.010851 C = 0.010065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.737107 B = 2579.835891 C = 2781.337899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.106 3.894 3 C -0.152 4.152 4 N -0.577 5.577 5 C 0.536 3.464 6 O -0.524 6.524 7 C -0.142 4.142 8 C 0.016 3.984 9 H 0.057 0.943 10 C -0.549 4.549 11 H 0.079 0.921 12 C 0.016 3.984 13 N -0.872 5.872 14 Si 0.958 3.042 15 H -0.259 1.259 16 H -0.290 1.290 17 H -0.274 1.274 18 C 0.514 3.486 19 O -0.493 6.493 20 H 0.042 0.958 21 H 0.063 0.937 22 H 0.097 0.903 23 H 0.084 0.916 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.097 0.903 27 H 0.129 0.871 28 H 0.119 0.881 29 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.013 7.368 -0.708 8.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.005 3.995 3 C -0.209 4.209 4 N -0.322 5.322 5 C 0.327 3.673 6 O -0.401 6.401 7 C -0.182 4.182 8 C -0.006 4.006 9 H 0.075 0.925 10 C -0.587 4.587 11 H 0.097 0.903 12 C -0.189 4.189 13 N -0.506 5.506 14 Si 0.783 3.217 15 H -0.183 1.183 16 H -0.216 1.216 17 H -0.200 1.200 18 C 0.305 3.695 19 O -0.363 6.363 20 H 0.061 0.939 21 H 0.082 0.918 22 H 0.116 0.884 23 H 0.102 0.898 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.115 0.885 27 H 0.147 0.853 28 H 0.137 0.863 29 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.026 7.489 -0.096 8.503 hybrid contribution -0.096 -1.127 0.308 1.172 sum -4.122 6.362 0.212 7.584 Atomic orbital electron populations 1.22069 0.93087 1.01921 1.04142 1.21475 0.96126 0.94568 0.87336 1.22051 1.00943 0.93782 1.04142 1.47347 1.47503 1.28248 1.09100 1.21091 0.78232 0.83734 0.84208 1.90607 1.38295 1.28494 1.82699 1.22600 1.01896 0.95934 0.97729 1.19552 0.98354 0.95380 0.87281 0.92509 1.21133 1.26508 0.90457 1.20561 0.90329 1.25946 0.95152 1.03323 0.94506 1.70280 1.28598 1.32270 1.19459 0.85610 0.78387 0.79149 0.78553 1.18335 1.21554 1.19973 1.22492 0.75555 0.76929 0.94544 1.90633 1.52201 1.55931 1.37532 0.93852 0.91758 0.88380 0.89755 0.93020 0.91779 0.88462 0.85301 0.86259 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 9.17 71.98 0.66 -3.97 15 2 C 0.11 3.64 3.31 44.99 0.15 3.79 15 3 C -0.15 -4.25 9.18 71.98 0.66 -3.59 15 4 N -0.58 -23.35 2.48 -734.25 -1.82 -25.16 15 5 C 0.54 20.38 7.42 87.99 0.65 21.03 15 6 O -0.52 -20.27 14.82 -2.86 -0.04 -20.32 15 7 C -0.14 -5.13 6.66 30.46 0.20 -4.92 15 8 C 0.02 0.73 3.04 -11.68 -0.04 0.69 15 9 H 0.06 2.78 8.14 -2.38 -0.02 2.76 15 10 C -0.55 -28.08 8.59 25.60 0.22 -27.86 15 11 H 0.08 3.77 7.40 -2.91 -0.02 3.75 15 12 C 0.02 0.84 5.30 84.65 0.45 1.29 15 13 N -0.87 -50.69 10.83 21.45 0.23 -50.45 15 14 Si 0.96 42.19 29.54 68.60 2.03 44.22 15 15 H -0.26 -10.70 7.11 99.48 0.71 -9.99 15 16 H -0.29 -12.84 7.11 99.48 0.71 -12.13 15 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 18 C 0.51 24.96 7.26 87.99 0.64 25.60 15 19 O -0.49 -27.71 14.74 -2.86 -0.04 -27.75 15 20 H 0.04 1.40 8.14 -2.39 -0.02 1.38 15 21 H 0.06 2.02 6.62 -2.39 -0.02 2.01 15 22 H 0.10 2.24 8.14 -2.38 -0.02 2.23 15 23 H 0.08 3.08 7.41 -2.39 -0.02 3.06 15 24 H 0.05 1.48 8.14 -2.39 -0.02 1.46 15 25 H 0.06 1.90 6.66 -2.39 -0.02 1.89 15 26 H 0.10 2.09 8.14 -2.39 -0.02 2.07 15 27 H 0.13 3.79 8.14 -2.39 -0.02 3.77 15 28 H 0.12 4.06 7.47 -2.39 -0.02 4.04 15 29 H 0.26 14.65 8.31 -92.71 -0.77 13.88 15 Total: -1.00 -63.52 246.37 5.10 -58.42 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 1.14 Total: 8.99 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 3.60 Total: 12.06 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -1.59 Total: -75.62 kcal Atomic # 8 Polarization: -47.98 SS G_CDS: -0.08 Total: -48.07 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -63.52 5.10 -58.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126503.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.383 kcal (2) G-P(sol) polarization free energy of solvation -63.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds