Wall clock time and date at job start Mon Mar 30 2020 03:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47209 * 2 1 4 4 C 1.50692 * 109.47393 * 239.99775 * 2 1 3 5 5 N 1.30054 * 126.20094 * 60.02529 * 4 2 1 6 6 O 1.21274 * 110.49231 * 179.97438 * 5 4 2 7 7 C 1.34113 * 109.72675 * 359.97438 * 6 5 4 8 8 N 1.37459 * 126.67248 * 179.97438 * 7 6 5 9 9 C 1.46500 * 119.99667 * 179.97438 * 8 7 6 10 10 C 1.36977 * 119.99961 * 359.97438 * 8 7 6 11 11 H 1.07991 * 120.00256 * 23.02742 * 10 8 7 12 12 C 1.38855 * 119.99827 * 203.01853 * 10 8 7 13 13 N 1.31511 * 120.00122 * 12.09954 * 12 10 8 14 14 Si 1.86803 * 120.00128 * 192.09430 * 12 10 8 15 15 H 1.48500 * 109.47214 * 90.00203 * 14 12 10 16 16 H 1.48500 * 109.47142 * 210.00392 * 14 12 10 17 17 H 1.48505 * 109.46833 * 330.00477 * 14 12 10 18 18 N 1.32178 * 106.65233 * 359.76098 * 7 6 5 19 19 H 1.09002 * 109.46923 * 60.00395 * 1 2 3 20 20 H 1.09004 * 109.47482 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47570 * 300.00322 * 1 2 3 22 22 H 1.09002 * 109.46923 * 119.99605 * 2 1 3 23 23 H 1.08998 * 109.47082 * 60.00138 * 3 2 1 24 24 H 1.09004 * 109.47099 * 179.97438 * 3 2 1 25 25 H 1.08991 * 109.47326 * 299.99707 * 3 2 1 26 26 H 1.08996 * 109.47410 * 95.07713 * 9 8 7 27 27 H 1.09007 * 109.46608 * 215.07436 * 9 8 7 28 28 H 1.08999 * 109.47123 * 335.06680 * 9 8 7 29 29 H 0.96999 * 119.99901 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2303 5 7 1.7940 -0.3726 -2.4635 6 8 2.3383 -1.1417 -3.2270 7 6 3.0006 -2.0776 -2.5313 8 7 3.7360 -3.1177 -3.0480 9 6 4.4041 -4.0606 -2.1475 10 6 3.8443 -3.2723 -4.4047 11 1 3.6931 -2.4262 -5.0584 12 6 4.1485 -4.5172 -4.9394 13 7 4.0991 -5.5892 -4.1793 14 14 4.6279 -4.6691 -6.7385 15 1 6.1001 -4.5280 -6.8721 16 1 4.2094 -5.9982 -7.2517 17 1 3.9552 -3.6017 -7.5218 18 7 2.8124 -1.8027 -1.2522 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 1.8932 -0.5138 0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8899 26 1 3.7664 -4.9314 -1.9952 27 1 5.3500 -4.3756 -2.5882 28 1 4.5930 -3.5764 -1.1895 29 1 4.3120 -6.4588 -4.5528 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261136800.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:44 Heat of formation + Delta-G solvation = 69.960680 kcal Electronic energy + Delta-G solvation = -14029.447063 eV Core-core repulsion = 11570.220333 eV Total energy + Delta-G solvation = -2459.226730 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.74718 -36.65881 -35.92135 -33.20094 -31.90716 -29.42989 -26.94385 -26.70189 -24.44840 -23.36013 -21.49545 -19.65836 -17.46330 -16.64948 -16.39816 -15.43134 -14.55443 -14.17253 -13.82683 -13.60001 -13.19967 -12.95965 -12.00113 -11.67200 -11.51205 -11.21041 -11.17033 -11.09949 -10.99166 -10.68468 -10.50484 -10.41405 -10.28555 -9.64591 -9.44373 -8.95630 -7.33863 -6.54645 -4.09959 2.67491 3.09661 3.12022 3.16374 3.56839 3.69191 4.09863 4.60840 4.85405 5.06662 5.41050 5.48334 5.61393 5.80269 5.85694 6.04051 6.07956 6.15613 6.44385 6.45369 6.60360 6.77255 7.03317 7.13901 7.26499 7.48653 7.72954 8.34228 8.96811 9.14485 9.86632 10.45325 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.063543 B = 0.007719 C = 0.007301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.542203 B = 3626.708804 C = 3834.045197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.002 3.998 3 C -0.139 4.139 4 C 0.198 3.802 5 N -0.439 5.439 6 O 0.002 5.998 7 C 0.395 3.605 8 N -0.379 5.379 9 C 0.139 3.861 10 C -0.326 4.326 11 H 0.102 0.898 12 C 0.039 3.961 13 N -0.867 5.867 14 Si 0.937 3.063 15 H -0.274 1.274 16 H -0.280 1.280 17 H -0.266 1.266 18 N -0.596 5.596 19 H 0.060 0.940 20 H 0.055 0.945 21 H 0.060 0.940 22 H 0.090 0.910 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.406 5.155 4.569 7.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.018 4.018 3 C -0.198 4.198 4 C -0.077 4.077 5 N -0.174 5.174 6 O -0.035 6.035 7 C 0.092 3.908 8 N -0.090 5.090 9 C -0.003 4.003 10 C -0.455 4.455 11 H 0.119 0.881 12 C -0.168 4.168 13 N -0.504 5.504 14 Si 0.763 3.237 15 H -0.199 1.199 16 H -0.206 1.206 17 H -0.190 1.190 18 N -0.350 5.350 19 H 0.079 0.921 20 H 0.074 0.926 21 H 0.079 0.921 22 H 0.108 0.892 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.639 5.323 4.556 7.195 hybrid contribution 0.349 -0.493 -1.042 1.204 sum -1.291 4.830 3.514 6.111 Atomic orbital electron populations 1.21785 0.93943 1.02141 1.01941 1.19294 0.95568 0.94776 0.92164 1.21784 1.01228 0.94794 1.01958 1.24896 0.96157 0.92768 0.93903 1.74259 1.23556 1.17411 1.02166 1.85201 1.52619 1.31974 1.33736 1.24383 0.90992 0.91002 0.84437 1.41528 1.40109 1.20907 1.06442 1.21521 0.97434 0.91113 0.90214 1.19742 1.49417 0.96389 0.79921 0.88073 1.25413 0.96374 0.94239 1.00745 1.70063 1.44576 0.98849 1.36872 0.85747 0.79007 0.78122 0.80846 1.19944 1.20560 1.19040 1.72075 1.28995 1.19335 1.14619 0.92094 0.92578 0.92135 0.89175 0.92137 0.92647 0.92091 0.91601 0.91203 0.93692 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.17 37.15 0.34 -1.65 15 2 C 0.00 0.04 3.39 -91.78 -0.31 -0.28 15 3 C -0.14 -1.95 9.18 37.16 0.34 -1.61 15 4 C 0.20 4.32 6.71 -156.51 -1.05 3.27 15 5 N -0.44 -10.37 12.15 31.17 0.38 -9.99 15 6 O 0.00 0.06 10.93 16.89 0.18 0.25 15 7 C 0.40 10.18 8.45 -87.41 -0.74 9.44 15 8 N -0.38 -9.81 3.08 -124.63 -0.38 -10.19 15 9 C 0.14 3.26 8.86 59.85 0.53 3.79 15 10 C -0.33 -8.54 9.47 -15.02 -0.14 -8.68 15 11 H 0.10 2.62 7.70 -52.49 -0.40 2.22 15 12 C 0.04 0.97 5.12 -17.46 -0.09 0.88 15 13 N -0.87 -22.08 10.66 55.49 0.59 -21.48 15 14 Si 0.94 19.33 29.57 -169.99 -5.03 14.30 15 15 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 16 H -0.28 -5.73 7.11 56.52 0.40 -5.33 15 17 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 18 N -0.60 -14.47 10.86 -12.98 -0.14 -14.61 15 19 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 20 H 0.06 0.84 8.14 -51.93 -0.42 0.41 15 21 H 0.06 0.67 8.14 -51.93 -0.42 0.25 15 22 H 0.09 1.40 8.14 -51.93 -0.42 0.97 15 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 15 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 25 H 0.06 0.90 8.14 -51.93 -0.42 0.47 15 26 H 0.07 1.61 7.35 -51.93 -0.38 1.23 15 27 H 0.07 1.62 7.32 -51.92 -0.38 1.24 15 28 H 0.04 0.98 7.54 -51.93 -0.39 0.59 15 29 H 0.27 6.53 8.31 -40.82 -0.34 6.19 15 LS Contribution 254.13 15.07 3.83 3.83 Total: -1.00 -28.25 254.13 -5.34 -33.59 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -3.65 Total: -0.86 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -1.12 Total: 5.17 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.44 Total: -56.28 kcal Atomic # 8 Polarization: 0.06 SS G_CDS: 0.18 Total: 0.25 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -28.25 -5.34 -33.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261136800.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.548 kcal (2) G-P(sol) polarization free energy of solvation -28.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds