Wall clock time and date at job start Mon Mar 30 2020 03:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47209 * 2 1 4 4 C 1.50692 * 109.47393 * 239.99775 * 2 1 3 5 5 N 1.30054 * 126.20094 * 60.02529 * 4 2 1 6 6 O 1.21274 * 110.49231 * 179.97438 * 5 4 2 7 7 C 1.34113 * 109.72675 * 359.97438 * 6 5 4 8 8 N 1.37459 * 126.67248 * 179.97438 * 7 6 5 9 9 C 1.46500 * 119.99667 * 179.97438 * 8 7 6 10 10 C 1.36977 * 119.99961 * 359.97438 * 8 7 6 11 11 H 1.07991 * 120.00256 * 23.02742 * 10 8 7 12 12 C 1.38855 * 119.99827 * 203.01853 * 10 8 7 13 13 N 1.31511 * 120.00122 * 12.09954 * 12 10 8 14 14 Si 1.86803 * 120.00128 * 192.09430 * 12 10 8 15 15 H 1.48500 * 109.47214 * 90.00203 * 14 12 10 16 16 H 1.48500 * 109.47142 * 210.00392 * 14 12 10 17 17 H 1.48505 * 109.46833 * 330.00477 * 14 12 10 18 18 N 1.32178 * 106.65233 * 359.76098 * 7 6 5 19 19 H 1.09002 * 109.46923 * 60.00395 * 1 2 3 20 20 H 1.09004 * 109.47482 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47570 * 300.00322 * 1 2 3 22 22 H 1.09002 * 109.46923 * 119.99605 * 2 1 3 23 23 H 1.08998 * 109.47082 * 60.00138 * 3 2 1 24 24 H 1.09004 * 109.47099 * 179.97438 * 3 2 1 25 25 H 1.08991 * 109.47326 * 299.99707 * 3 2 1 26 26 H 1.08996 * 109.47410 * 95.07713 * 9 8 7 27 27 H 1.09007 * 109.46608 * 215.07436 * 9 8 7 28 28 H 1.08999 * 109.47123 * 335.06680 * 9 8 7 29 29 H 0.96999 * 119.99901 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2303 5 7 1.7940 -0.3726 -2.4635 6 8 2.3383 -1.1417 -3.2270 7 6 3.0006 -2.0776 -2.5313 8 7 3.7360 -3.1177 -3.0480 9 6 4.4041 -4.0606 -2.1475 10 6 3.8443 -3.2723 -4.4047 11 1 3.6931 -2.4262 -5.0584 12 6 4.1485 -4.5172 -4.9394 13 7 4.0991 -5.5892 -4.1793 14 14 4.6279 -4.6691 -6.7385 15 1 6.1001 -4.5280 -6.8721 16 1 4.2094 -5.9982 -7.2517 17 1 3.9552 -3.6017 -7.5218 18 7 2.8124 -1.8027 -1.2522 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 1.8932 -0.5138 0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8899 26 1 3.7664 -4.9314 -1.9952 27 1 5.3500 -4.3756 -2.5882 28 1 4.5930 -3.5764 -1.1895 29 1 4.3120 -6.4588 -4.5528 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261136800.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:44 Heat of formation + Delta-G solvation = 52.136748 kcal Electronic energy + Delta-G solvation = -14030.219967 eV Core-core repulsion = 11570.220333 eV Total energy + Delta-G solvation = -2459.999634 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.60280 -38.59126 -37.41007 -34.95373 -33.75700 -31.27603 -28.63105 -28.05362 -26.38811 -24.93343 -23.31507 -21.34581 -19.24417 -18.55278 -18.32616 -17.14915 -16.37056 -15.70554 -15.47464 -15.06785 -15.03272 -14.22520 -13.48274 -13.34744 -13.08098 -12.91406 -12.70990 -12.60575 -12.44803 -12.41046 -12.10062 -12.07278 -11.85124 -11.42899 -11.30513 -10.82612 -9.28028 -8.46206 -6.10005 0.79612 1.40960 1.46606 1.54543 1.73984 1.87105 2.31941 2.90681 3.04986 3.52965 3.88356 4.20231 4.23395 4.35078 4.62799 4.79087 4.84398 4.85841 4.92955 5.02632 5.18742 5.24084 5.29155 5.32806 5.45268 5.63155 5.80731 6.39992 7.01366 7.18655 7.95571 8.54395 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.063543 B = 0.007719 C = 0.007301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.542203 B = 3626.708804 C = 3834.045197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.003 4.003 3 C -0.133 4.133 4 C 0.205 3.795 5 N -0.452 5.452 6 O -0.023 6.023 7 C 0.380 3.620 8 N -0.391 5.391 9 C 0.152 3.848 10 C -0.358 4.358 11 H 0.094 0.906 12 C 0.006 3.994 13 N -0.888 5.888 14 Si 1.006 2.994 15 H -0.263 1.263 16 H -0.273 1.273 17 H -0.266 1.266 18 N -0.608 5.608 19 H 0.049 0.951 20 H 0.043 0.957 21 H 0.101 0.899 22 H 0.102 0.898 23 H 0.100 0.900 24 H 0.045 0.955 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.518 5.650 5.043 7.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.024 4.024 3 C -0.191 4.191 4 C -0.070 4.070 5 N -0.191 5.191 6 O -0.056 6.056 7 C 0.076 3.924 8 N -0.102 5.102 9 C 0.011 3.989 10 C -0.486 4.486 11 H 0.111 0.889 12 C -0.199 4.199 13 N -0.524 5.524 14 Si 0.828 3.172 15 H -0.188 1.188 16 H -0.198 1.198 17 H -0.190 1.190 18 N -0.363 5.363 19 H 0.069 0.931 20 H 0.062 0.938 21 H 0.120 0.880 22 H 0.121 0.879 23 H 0.119 0.881 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.745 5.809 5.031 7.880 hybrid contribution 0.346 -0.639 -1.102 1.321 sum -1.399 5.170 3.928 6.642 Atomic orbital electron populations 1.21768 0.92078 1.01866 1.03462 1.19699 0.97066 0.95734 0.89858 1.21760 1.00651 0.93202 1.03451 1.25953 0.94239 0.91675 0.95129 1.74246 1.24387 1.17585 1.02835 1.85179 1.53251 1.32469 1.34729 1.24717 0.91295 0.91259 0.85103 1.41784 1.40411 1.21251 1.06796 1.21401 0.96765 0.90378 0.90400 1.19940 1.51395 0.97015 0.80274 0.88866 1.26289 0.95334 0.93347 1.04908 1.70134 1.44176 0.99382 1.38664 0.84738 0.79004 0.78109 0.75379 1.18835 1.19806 1.19050 1.72101 1.29745 1.20454 1.13964 0.93141 0.93766 0.88028 0.87944 0.88086 0.93543 0.93131 0.92891 0.91327 0.92492 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 9.17 71.98 0.66 -2.81 15 2 C 0.00 -0.10 3.39 -11.54 -0.04 -0.14 15 3 C -0.13 -3.37 9.18 71.98 0.66 -2.71 15 4 C 0.21 8.87 6.71 138.51 0.93 9.79 15 5 N -0.45 -21.53 12.15 -58.67 -0.71 -22.24 15 6 O -0.02 -1.20 10.93 70.50 0.77 -0.43 15 7 C 0.38 19.92 8.45 179.23 1.51 21.44 15 8 N -0.39 -20.61 3.08 -659.13 -2.03 -22.64 15 9 C 0.15 7.22 8.86 127.77 1.13 8.35 15 10 C -0.36 -19.04 9.47 84.04 0.80 -18.25 15 11 H 0.09 4.97 7.70 -2.92 -0.02 4.95 15 12 C 0.01 0.30 5.12 84.89 0.43 0.74 15 13 N -0.89 -44.99 10.66 21.65 0.23 -44.76 15 14 Si 1.01 39.03 29.57 68.60 2.03 41.06 15 15 H -0.26 -9.77 7.11 99.48 0.71 -9.06 15 16 H -0.27 -10.24 7.11 99.48 0.71 -9.53 15 17 H -0.27 -10.27 7.11 99.48 0.71 -9.56 15 18 N -0.61 -29.58 10.86 -311.65 -3.38 -32.97 15 19 H 0.05 1.41 8.14 -2.39 -0.02 1.39 15 20 H 0.04 1.24 8.14 -2.39 -0.02 1.22 15 21 H 0.10 1.82 8.14 -2.39 -0.02 1.80 15 22 H 0.10 2.90 8.14 -2.39 -0.02 2.88 15 23 H 0.10 1.77 8.14 -2.39 -0.02 1.75 15 24 H 0.05 1.25 8.14 -2.38 -0.02 1.23 15 25 H 0.05 1.39 8.14 -2.39 -0.02 1.37 15 26 H 0.05 2.62 7.35 -2.39 -0.02 2.60 15 27 H 0.07 3.21 7.32 -2.38 -0.02 3.19 15 28 H 0.06 2.50 7.54 -2.39 -0.02 2.48 15 29 H 0.28 13.18 8.31 -92.71 -0.77 12.41 15 Total: -1.00 -60.57 254.13 4.13 -56.44 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 1.14 Total: 9.13 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 6.09 Total: 16.41 kcal Atomic # 7 Polarization: -116.71 SS G_CDS: -5.90 Total: -122.61 kcal Atomic # 8 Polarization: -1.20 SS G_CDS: 0.77 Total: -0.43 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -60.57 4.13 -56.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261136800.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.576 kcal (2) G-P(sol) polarization free energy of solvation -60.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds