Wall clock time and date at job start Mon Mar 30 2020 03:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47148 * 2 1 4 4 C 1.35152 * 116.99747 * 179.97438 * 3 2 1 5 5 N 1.32074 * 126.20938 * 0.03041 * 4 3 2 6 6 N 1.28520 * 110.21325 * 179.73403 * 5 4 3 7 7 C 1.33030 * 109.64961 * 0.02562 * 6 5 4 8 8 C 1.39889 * 126.59625 * 180.02562 * 7 6 5 9 9 H 1.07996 * 119.99526 * 179.97438 * 8 7 6 10 10 C 1.40155 * 120.00225 * 359.97069 * 8 7 6 11 11 N 1.30766 * 119.99656 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00060 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47259 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47241 * 120.00408 * 12 10 8 15 15 H 1.48501 * 109.47213 * 239.99850 * 12 10 8 16 16 N 1.36263 * 126.20535 * 179.71370 * 4 3 2 17 17 C 1.46498 * 127.12851 * 0.26995 * 16 4 3 18 18 C 1.52997 * 109.47300 * 90.02319 * 17 16 4 19 19 H 1.09000 * 109.46922 * 299.99604 * 1 2 3 20 20 H 1.09000 * 109.47452 * 59.99530 * 1 2 3 21 21 H 1.08994 * 109.47593 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46922 * 240.00396 * 2 1 3 23 23 H 1.09000 * 109.47452 * 120.00470 * 2 1 3 24 24 H 0.97005 * 119.99531 * 180.02562 * 11 10 8 25 25 H 1.08999 * 109.46698 * 210.01839 * 17 16 4 26 26 H 1.08995 * 109.47060 * 330.01800 * 17 16 4 27 27 H 1.08999 * 109.46853 * 299.99425 * 18 17 16 28 28 H 1.08995 * 109.47488 * 59.99742 * 18 17 16 29 29 H 1.09006 * 109.47132 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3462 1.5243 0.0005 5 7 4.2593 0.5700 0.0005 6 7 5.4377 1.0829 -0.0045 7 6 5.3478 2.4102 -0.0074 8 6 6.4120 3.3181 -0.0135 9 1 6.2157 4.3800 -0.0158 10 6 7.7329 2.8496 -0.0165 11 7 7.9705 1.5637 -0.0142 12 14 9.1540 4.0619 -0.0239 13 1 8.6219 5.4483 -0.0250 14 1 9.9888 3.8536 1.1864 15 1 9.9811 3.8477 -1.2385 16 7 4.0001 2.7197 -0.0049 17 6 3.3998 4.0560 -0.0068 18 6 3.1957 4.5256 1.4349 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 8.8848 1.2394 -0.0159 25 1 4.0611 4.7506 -0.5249 26 1 2.4374 4.0212 -0.5173 27 1 2.5345 3.8311 1.9531 28 1 4.1581 4.5604 1.9454 29 1 2.7495 5.5201 1.4334 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261222034.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:46 Heat of formation + Delta-G solvation = 6.324493 kcal Electronic energy + Delta-G solvation = -14088.202232 eV Core-core repulsion = 11626.216030 eV Total energy + Delta-G solvation = -2461.986202 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.67518 -39.27078 -36.06446 -35.45242 -32.57452 -31.25023 -30.36840 -27.28710 -24.74192 -24.35192 -22.26289 -21.79486 -19.35702 -18.21027 -17.51831 -17.26635 -16.51446 -15.72853 -15.48668 -14.89090 -14.69446 -13.83572 -13.53198 -13.41289 -13.21927 -13.14736 -12.84475 -12.75884 -12.43959 -12.12795 -11.89126 -11.73299 -11.62681 -11.16189 -10.51217 -10.29396 -9.26379 -8.46362 -6.51384 1.31108 1.37940 1.49725 1.64959 1.72946 2.28173 2.52124 2.96438 3.39570 3.92949 4.06843 4.18455 4.25212 4.39270 4.40997 4.57399 4.75650 4.77533 4.91053 4.95091 5.02985 5.21559 5.23370 5.37917 5.47981 5.76226 6.30212 6.62238 6.86033 7.08196 8.50180 8.74956 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.046801 B = 0.009130 C = 0.007836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.132262 B = 3065.923931 C = 3572.556863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.072 3.928 3 O -0.307 6.307 4 C 0.271 3.729 5 N -0.380 5.380 6 N -0.386 5.386 7 C 0.317 3.683 8 C -0.470 4.470 9 H 0.103 0.897 10 C 0.029 3.971 11 N -0.792 5.792 12 Si 1.006 2.994 13 H -0.245 1.245 14 H -0.269 1.269 15 H -0.269 1.269 16 N -0.518 5.518 17 C 0.116 3.884 18 C -0.153 4.153 19 H 0.069 0.931 20 H 0.069 0.931 21 H 0.106 0.894 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.283 0.717 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.043 0.957 28 H 0.045 0.955 29 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.840 6.031 0.529 10.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.003 4.003 3 O -0.213 6.213 4 C -0.034 4.034 5 N -0.233 5.233 6 N -0.232 5.232 7 C 0.072 3.928 8 C -0.510 4.510 9 H 0.121 0.879 10 C -0.191 4.191 11 N -0.418 5.418 12 Si 0.825 3.175 13 H -0.167 1.167 14 H -0.194 1.194 15 H -0.194 1.194 16 N -0.225 5.225 17 C -0.006 4.006 18 C -0.211 4.211 19 H 0.088 0.912 20 H 0.088 0.912 21 H 0.124 0.876 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.093 0.907 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.469 4.570 0.527 9.638 hybrid contribution 0.143 1.021 0.000 1.031 sum -8.326 5.591 0.527 10.043 Atomic orbital electron populations 1.21785 0.89232 1.04584 1.03565 1.22790 0.96877 0.79378 1.01285 1.85584 1.12515 1.31963 1.91227 1.21902 0.85898 0.85238 1.10349 1.74361 0.97230 1.26736 1.24980 1.75348 1.10192 1.05256 1.32403 1.21731 0.80968 0.92855 0.97284 1.18597 0.88512 0.93383 1.50504 0.87881 1.26953 1.02502 0.97661 0.91993 1.70159 1.22861 1.16285 1.32495 0.84819 0.75798 0.78348 0.78553 1.16736 1.19385 1.19353 1.46044 1.06101 1.05711 1.64646 1.21729 0.99004 0.80306 0.99555 1.22035 1.01676 1.02531 0.94855 0.91221 0.91197 0.87560 0.93202 0.93238 0.90698 0.88684 0.88945 0.93743 0.93554 0.87474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 10.28 71.98 0.74 -2.27 15 2 C 0.07 2.49 6.34 71.98 0.46 2.94 15 3 O -0.31 -13.06 10.15 -84.30 -0.86 -13.92 15 4 C 0.27 14.03 8.62 179.41 1.55 15.58 15 5 N -0.38 -22.53 11.64 -173.05 -2.01 -24.54 15 6 N -0.39 -24.78 10.49 -55.03 -0.58 -25.36 15 7 C 0.32 18.44 7.53 133.30 1.00 19.44 15 8 C -0.47 -25.30 9.05 23.14 0.21 -25.09 15 9 H 0.10 4.91 7.31 -2.91 -0.02 4.89 15 10 C 0.03 1.50 5.50 85.32 0.47 1.97 15 11 N -0.79 -45.54 11.94 21.87 0.26 -45.28 15 12 Si 1.01 38.02 29.56 68.60 2.03 40.05 15 13 H -0.24 -8.44 7.11 99.48 0.71 -7.73 15 14 H -0.27 -9.88 7.11 99.48 0.71 -9.18 15 15 H -0.27 -9.86 7.11 99.48 0.71 -9.16 15 16 N -0.52 -25.81 2.84 -636.73 -1.81 -27.62 15 17 C 0.12 4.23 6.72 86.38 0.58 4.81 15 18 C -0.15 -4.76 10.24 71.98 0.74 -4.02 15 19 H 0.07 1.47 8.14 -2.39 -0.02 1.45 15 20 H 0.07 1.47 8.14 -2.39 -0.02 1.45 15 21 H 0.11 1.76 8.14 -2.39 -0.02 1.74 15 22 H 0.05 1.79 8.14 -2.39 -0.02 1.77 15 23 H 0.05 1.78 8.14 -2.39 -0.02 1.76 15 24 H 0.28 14.63 8.29 -92.70 -0.77 13.86 15 25 H 0.09 3.22 7.53 -2.39 -0.02 3.20 15 26 H 0.09 2.96 8.14 -2.39 -0.02 2.94 15 27 H 0.04 1.45 8.14 -2.39 -0.02 1.44 15 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 15 29 H 0.11 2.37 8.14 -2.38 -0.02 2.35 15 Total: -1.00 -74.84 258.63 3.91 -70.93 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 1.14 Total: 12.37 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 5.74 Total: 13.36 kcal Atomic # 7 Polarization: -118.66 SS G_CDS: -4.14 Total: -122.80 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.86 Total: -13.92 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Total: -74.84 3.91 -70.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261222034.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.256 kcal (2) G-P(sol) polarization free energy of solvation -74.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds