Wall clock time and date at job start Mon Mar 30 2020 02:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35706 * 116.99652 * 2 1 4 4 N 1.30613 * 126.88802 * 359.97438 * 3 2 1 5 5 O 1.20914 * 111.50626 * 180.02562 * 4 3 2 6 6 C 1.34078 * 111.71284 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.70971 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47551 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47211 * 300.02709 * 7 6 5 10 10 C 1.50702 * 109.46869 * 60.02266 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 7 6 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 7 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 7 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 C 1.35269 * 106.58501 * 0.26062 * 6 5 4 19 19 C 1.50707 * 128.02224 * 179.70286 * 18 6 5 20 20 H 1.08994 * 109.47404 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46553 * 299.99611 * 1 2 3 22 22 H 1.09005 * 109.47603 * 59.99394 * 1 2 3 23 23 H 1.09003 * 109.46851 * 299.99806 * 9 7 6 24 24 H 1.09003 * 109.47532 * 59.99881 * 9 7 6 25 25 H 1.09001 * 109.47094 * 179.97438 * 9 7 6 26 26 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 27 27 H 1.09002 * 109.46980 * 90.00347 * 19 18 6 28 28 H 1.08995 * 109.47041 * 210.00226 * 19 18 6 29 29 H 1.09000 * 109.47002 * 329.99987 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 7 1.4701 2.3820 -0.0005 5 8 2.2851 3.2752 -0.0008 6 6 3.5396 2.8020 -0.0001 7 6 4.8088 3.6145 0.0003 8 1 5.6689 2.9450 0.0004 9 6 4.8498 4.4970 -1.2488 10 6 4.8485 4.4835 1.2309 11 1 4.0361 4.4505 1.9418 12 6 5.9249 5.3163 1.4523 13 7 5.9621 6.0707 2.5289 14 14 7.3303 5.3730 0.2231 15 1 7.0523 6.4138 -0.7990 16 1 8.5942 5.6995 0.9310 17 1 7.4617 4.0507 -0.4400 18 6 3.4433 1.4527 -0.0051 19 6 4.5615 0.4423 -0.0127 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3632 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 4.8211 3.8684 -2.1388 24 1 3.9897 5.1667 -1.2490 25 1 5.7676 5.0850 -1.2483 26 1 6.7192 6.6567 2.6845 27 1 4.8343 0.1947 1.0132 28 1 4.2327 -0.4595 -0.5290 29 1 5.4261 0.8611 -0.5277 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261230821.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:16 Heat of formation + Delta-G solvation = 21.098089 kcal Electronic energy + Delta-G solvation = -14128.035026 eV Core-core repulsion = 11634.396704 eV Total energy + Delta-G solvation = -2493.638322 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.18847 -38.48117 -35.33352 -33.30473 -31.77030 -30.08232 -27.56292 -27.18893 -25.21749 -22.65525 -21.58199 -19.94743 -17.35016 -16.96669 -16.47596 -15.74990 -15.20430 -14.99059 -14.44702 -13.70124 -13.05920 -12.81910 -12.61110 -12.30277 -12.16472 -11.91366 -11.57840 -11.36292 -11.15960 -10.60257 -10.57854 -10.17989 -9.59643 -9.37058 -8.71889 -8.69891 -8.34950 -6.18867 -4.21943 2.18817 2.81999 3.14026 3.20282 3.28034 3.32526 3.93078 4.28701 4.74531 5.11246 5.19917 5.24556 5.30716 5.49043 5.64034 5.80658 6.02871 6.07171 6.20025 6.27183 6.36583 6.50396 6.67657 6.75568 7.17603 7.35954 7.47741 8.33164 8.82759 8.91192 9.38063 10.93696 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.052249 B = 0.008817 C = 0.008440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.762510 B = 3175.041073 C = 3316.817200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.288 6.288 3 C 0.204 3.796 4 N -0.429 5.429 5 O 0.099 5.901 6 C 0.069 3.931 7 C 0.080 3.920 8 H 0.064 0.936 9 C -0.151 4.151 10 C -0.521 4.521 11 H 0.079 0.921 12 C 0.077 3.923 13 N -0.890 5.890 14 Si 0.886 3.114 15 H -0.275 1.275 16 H -0.294 1.294 17 H -0.264 1.264 18 C -0.242 4.242 19 C -0.061 4.061 20 H 0.098 0.902 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.036 0.964 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.267 0.733 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.092 -9.497 -6.722 12.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.195 6.195 3 C 0.006 3.994 4 N -0.157 5.157 5 O 0.043 5.957 6 C 0.005 3.995 7 C 0.060 3.940 8 H 0.082 0.918 9 C -0.208 4.208 10 C -0.558 4.558 11 H 0.097 0.903 12 C -0.126 4.126 13 N -0.527 5.527 14 Si 0.716 3.284 15 H -0.202 1.202 16 H -0.221 1.221 17 H -0.189 1.189 18 C -0.247 4.247 19 C -0.118 4.118 20 H 0.117 0.883 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.153 -9.217 -6.607 12.457 hybrid contribution 1.032 -0.202 -0.465 1.150 sum -4.121 -9.419 -7.072 12.479 Atomic orbital electron populations 1.22947 0.77875 1.03218 1.02093 1.86122 1.21748 1.21696 1.89904 1.21819 0.90709 0.85492 1.01417 1.74045 1.16723 0.96466 1.28489 1.84765 1.12752 1.29210 1.68963 1.24650 0.88160 0.92171 0.94524 1.18126 0.85581 0.93877 0.96419 0.91817 1.22190 1.01985 0.99889 0.96724 1.20766 1.07580 1.22536 1.04941 0.90256 1.24930 0.97727 0.94669 0.95279 1.69870 1.31222 1.25348 1.26280 0.86870 0.81505 0.79144 0.80902 1.20173 1.22130 1.18901 1.20276 0.92095 0.94757 1.17544 1.19920 0.94157 0.95497 1.02232 0.88319 0.92568 0.92691 0.94539 0.91899 0.93104 0.92255 0.91457 0.91870 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.73 101.05 1.08 1.52 15 2 O -0.29 -4.87 10.57 -18.82 -0.20 -5.07 15 3 C 0.20 4.00 8.00 -16.65 -0.13 3.87 15 4 N -0.43 -8.99 11.54 30.38 0.35 -8.64 15 5 O 0.10 2.22 11.19 17.08 0.19 2.41 15 6 C 0.07 1.49 5.92 -35.37 -0.21 1.28 15 7 C 0.08 1.81 2.29 -92.92 -0.21 1.59 15 8 H 0.06 1.39 6.14 -51.93 -0.32 1.08 15 9 C -0.15 -3.11 8.66 37.16 0.32 -2.79 15 10 C -0.52 -14.16 9.13 -34.44 -0.31 -14.47 15 11 H 0.08 2.40 7.98 -52.49 -0.42 1.98 15 12 C 0.08 2.13 5.45 -17.82 -0.10 2.03 15 13 N -0.89 -26.32 13.96 55.43 0.77 -25.55 15 14 Si 0.89 20.52 24.37 -169.99 -4.14 16.38 15 15 H -0.27 -6.19 6.87 56.52 0.39 -5.81 15 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 17 H -0.26 -5.68 6.52 56.52 0.37 -5.32 15 18 C -0.24 -4.77 6.34 -104.26 -0.66 -5.43 15 19 C -0.06 -0.97 10.15 36.01 0.37 -0.61 15 20 H 0.10 0.89 8.14 -51.93 -0.42 0.47 15 21 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 24 H 0.06 1.29 8.14 -51.93 -0.42 0.87 15 25 H 0.05 1.07 3.29 -51.93 -0.17 0.90 15 26 H 0.27 7.37 8.31 -40.82 -0.34 7.03 15 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 15 29 H 0.07 1.04 7.40 -51.93 -0.38 0.66 15 LS Contribution 248.91 15.07 3.75 3.75 Total: -1.00 -29.91 248.91 -2.56 -32.47 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: -3.43 Total: -2.75 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 0.14 Total: -13.01 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 1.12 Total: -34.19 kcal Atomic # 8 Polarization: -2.64 SS G_CDS: -0.01 Total: -2.65 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.14 Total: 16.38 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -29.91 -2.56 -32.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261230821.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.573 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds