Wall clock time and date at job start Mon Mar 30 2020 02:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35706 * 116.99652 * 2 1 4 4 N 1.30613 * 126.88802 * 359.97438 * 3 2 1 5 5 O 1.20914 * 111.50626 * 180.02562 * 4 3 2 6 6 C 1.34078 * 111.71284 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.70971 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47551 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47211 * 300.02709 * 7 6 5 10 10 C 1.50702 * 109.46869 * 60.02266 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 7 6 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 7 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 7 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 C 1.35269 * 106.58501 * 0.26062 * 6 5 4 19 19 C 1.50707 * 128.02224 * 179.70286 * 18 6 5 20 20 H 1.08994 * 109.47404 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46553 * 299.99611 * 1 2 3 22 22 H 1.09005 * 109.47603 * 59.99394 * 1 2 3 23 23 H 1.09003 * 109.46851 * 299.99806 * 9 7 6 24 24 H 1.09003 * 109.47532 * 59.99881 * 9 7 6 25 25 H 1.09001 * 109.47094 * 179.97438 * 9 7 6 26 26 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 27 27 H 1.09002 * 109.46980 * 90.00347 * 19 18 6 28 28 H 1.08995 * 109.47041 * 210.00226 * 19 18 6 29 29 H 1.09000 * 109.47002 * 329.99987 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 7 1.4701 2.3820 -0.0005 5 8 2.2851 3.2752 -0.0008 6 6 3.5396 2.8020 -0.0001 7 6 4.8088 3.6145 0.0003 8 1 5.6689 2.9450 0.0004 9 6 4.8498 4.4970 -1.2488 10 6 4.8485 4.4835 1.2309 11 1 4.0361 4.4505 1.9418 12 6 5.9249 5.3163 1.4523 13 7 5.9621 6.0707 2.5289 14 14 7.3303 5.3730 0.2231 15 1 7.0523 6.4138 -0.7990 16 1 8.5942 5.6995 0.9310 17 1 7.4617 4.0507 -0.4400 18 6 3.4433 1.4527 -0.0051 19 6 4.5615 0.4423 -0.0127 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3632 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 4.8211 3.8684 -2.1388 24 1 3.9897 5.1667 -1.2490 25 1 5.7676 5.0850 -1.2483 26 1 6.7192 6.6567 2.6845 27 1 4.8343 0.1947 1.0132 28 1 4.2327 -0.4595 -0.5290 29 1 5.4261 0.8611 -0.5277 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261230821.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:15 Heat of formation + Delta-G solvation = -0.852376 kcal Electronic energy + Delta-G solvation = -14128.986870 eV Core-core repulsion = 11634.396704 eV Total energy + Delta-G solvation = -2494.590166 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -45.76579 -39.80712 -37.08284 -34.92875 -33.67570 -31.70889 -28.83130 -28.44774 -27.16176 -24.35115 -23.11664 -21.48397 -19.13626 -18.57372 -18.28017 -17.19256 -16.76675 -16.38662 -16.03342 -15.25998 -14.90084 -14.23015 -14.10361 -13.92122 -13.51900 -13.22374 -13.07447 -12.80474 -12.70507 -12.40282 -12.11705 -11.87485 -11.37147 -11.31761 -10.76185 -10.20946 -9.94906 -8.30063 -6.39419 0.55184 1.29680 1.39293 1.43697 1.54886 1.80504 2.33025 2.36179 3.05064 3.27688 3.87249 3.98873 4.23247 4.23801 4.38544 4.50986 4.59673 4.61083 4.72897 4.84872 4.90775 5.01816 5.06884 5.29931 5.49020 5.54089 5.99085 6.20407 6.64389 7.24905 7.29022 8.86774 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.052249 B = 0.008817 C = 0.008440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.762510 B = 3175.041073 C = 3316.817200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.289 6.289 3 C 0.206 3.794 4 N -0.441 5.441 5 O 0.072 5.928 6 C 0.042 3.958 7 C 0.082 3.918 8 H 0.082 0.918 9 C -0.148 4.148 10 C -0.527 4.527 11 H 0.026 0.974 12 C 0.019 3.981 13 N -0.945 5.945 14 Si 0.952 3.048 15 H -0.262 1.262 16 H -0.298 1.298 17 H -0.229 1.229 18 C -0.236 4.236 19 C -0.063 4.063 20 H 0.142 0.858 21 H 0.050 0.950 22 H 0.057 0.943 23 H 0.071 0.929 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.270 0.730 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.247 -11.459 -8.797 14.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.196 6.196 3 C 0.008 3.992 4 N -0.173 5.173 5 O 0.018 5.982 6 C -0.021 4.021 7 C 0.063 3.937 8 H 0.099 0.901 9 C -0.206 4.206 10 C -0.565 4.565 11 H 0.044 0.956 12 C -0.179 4.179 13 N -0.584 5.584 14 Si 0.777 3.223 15 H -0.188 1.188 16 H -0.225 1.225 17 H -0.152 1.152 18 C -0.240 4.240 19 C -0.120 4.120 20 H 0.159 0.841 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.090 0.910 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.321 -11.200 -8.697 14.824 hybrid contribution 0.585 0.319 0.267 0.718 sum -3.736 -10.880 -8.430 14.262 Atomic orbital electron populations 1.23309 0.75562 1.06017 1.01938 1.86145 1.23991 1.20013 1.89446 1.22047 0.91090 0.85998 1.00067 1.74015 1.16809 0.96984 1.29511 1.84727 1.13300 1.30118 1.70032 1.24625 0.87801 0.93098 0.96598 1.18041 0.86828 0.93768 0.95096 0.90084 1.22126 1.01522 0.99904 0.97008 1.20934 1.06033 1.23615 1.05939 0.95599 1.25890 1.00842 0.93896 0.97299 1.70039 1.32569 1.26818 1.28973 0.85810 0.76944 0.81183 0.78400 1.18803 1.22544 1.15179 1.20790 0.93234 0.94610 1.15377 1.20101 0.93325 0.95421 1.03121 0.84056 0.93120 0.92472 0.90967 0.92891 0.93115 0.92126 0.90938 0.89586 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.73 113.37 1.22 1.82 15 2 O -0.29 -9.11 10.57 -90.26 -0.95 -10.06 15 3 C 0.21 7.84 8.00 85.79 0.69 8.53 15 4 N -0.44 -18.47 11.54 -172.59 -1.99 -20.46 15 5 O 0.07 3.28 11.19 71.28 0.80 4.07 15 6 C 0.04 1.80 5.92 25.00 0.15 1.94 15 7 C 0.08 3.63 2.29 -12.29 -0.03 3.61 15 8 H 0.08 3.30 6.14 -2.39 -0.01 3.29 15 9 C -0.15 -5.78 8.66 71.98 0.62 -5.16 15 10 C -0.53 -29.41 9.13 25.60 0.23 -29.18 15 11 H 0.03 1.66 7.98 -2.91 -0.02 1.64 15 12 C 0.02 1.05 5.45 84.66 0.46 1.51 15 13 N -0.95 -57.72 13.96 21.45 0.30 -57.42 15 14 Si 0.95 41.14 24.37 68.60 1.67 42.81 15 15 H -0.26 -10.76 6.87 99.48 0.68 -10.08 15 16 H -0.30 -12.99 7.11 99.48 0.71 -12.29 15 17 H -0.23 -8.55 6.52 99.48 0.65 -7.91 15 18 C -0.24 -8.89 6.34 -19.63 -0.12 -9.01 15 19 C -0.06 -1.80 10.15 71.24 0.72 -1.08 15 20 H 0.14 2.03 8.14 -2.39 -0.02 2.01 15 21 H 0.05 1.23 8.14 -2.38 -0.02 1.21 15 22 H 0.06 1.30 8.14 -2.38 -0.02 1.28 15 23 H 0.07 2.29 8.14 -2.39 -0.02 2.27 15 24 H 0.05 2.13 8.14 -2.39 -0.02 2.11 15 25 H 0.05 1.96 3.29 -2.39 -0.01 1.95 15 26 H 0.27 15.30 8.31 -92.71 -0.77 14.53 15 27 H 0.07 2.03 8.14 -2.39 -0.02 2.01 15 28 H 0.09 2.07 8.14 -2.39 -0.02 2.05 15 29 H 0.08 2.17 7.40 -2.39 -0.02 2.15 15 Total: -1.00 -66.69 248.91 4.83 -61.86 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 1.07 Total: 6.22 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: 3.94 Total: -27.02 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -1.69 Total: -77.88 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.16 Total: -5.99 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 1.67 Total: 42.81 kcal Total: -66.69 4.83 -61.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261230821.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.009 kcal (2) G-P(sol) polarization free energy of solvation -66.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds