Wall clock time and date at job start Mon Mar 30 2020 02:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 N 1.30251 * 125.61820 * 239.72124 * 4 2 1 6 6 C 1.34482 * 108.70003 * 179.84008 * 5 4 2 7 7 C 1.50696 * 126.17052 * 180.16821 * 6 5 4 8 8 H 1.08997 * 109.47026 * 145.27320 * 7 6 5 9 9 O 1.42898 * 109.47087 * 25.27068 * 7 6 5 10 10 C 1.50704 * 109.47034 * 265.27286 * 7 6 5 11 11 H 1.08001 * 119.99847 * 359.97438 * 10 7 6 12 12 C 1.37876 * 119.99726 * 179.97438 * 10 7 6 13 13 N 1.31511 * 120.00210 * 0.02562 * 12 10 7 14 14 Si 1.86801 * 119.99689 * 180.02562 * 12 10 7 15 15 H 1.48496 * 109.47399 * 60.00316 * 14 12 10 16 16 H 1.48504 * 109.47111 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47038 * 299.99963 * 14 12 10 18 18 C 1.34339 * 107.66399 * 0.41979 * 6 5 4 19 19 O 1.33960 * 125.61443 * 60.02513 * 4 2 1 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 0.96707 * 114.00118 * 300.00587 * 9 7 6 28 28 H 0.97002 * 120.00404 * 179.97438 * 13 12 10 29 29 H 1.07994 * 126.44111 * 179.77047 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 7 2.7885 -1.7710 -1.2385 6 6 3.0285 -2.1198 -2.5150 7 6 3.8564 -3.2914 -2.9762 8 1 3.4259 -3.7037 -3.8887 9 8 3.8690 -4.2954 -1.9595 10 6 5.2664 -2.8341 -3.2481 11 1 5.5359 -1.7985 -3.1019 12 6 6.2124 -3.7378 -3.6834 13 7 5.8841 -4.9987 -3.8619 14 14 7.9603 -3.1711 -4.0197 15 1 8.5464 -2.6093 -2.7763 16 1 8.7762 -4.3256 -4.4743 17 1 7.9477 -2.1278 -5.0764 18 6 2.4016 -1.2322 -3.3048 19 8 1.7794 -0.3519 -2.4962 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 4.2398 -3.9978 -1.1173 28 1 6.5495 -5.6344 -4.1685 29 1 2.3969 -1.2256 -4.3847 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261241460.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:03 Heat of formation + Delta-G solvation = -43.608991 kcal Electronic energy + Delta-G solvation = -13887.599836 eV Core-core repulsion = 11391.155604 eV Total energy + Delta-G solvation = -2496.444231 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.61141 -35.92835 -35.42588 -33.49944 -32.12795 -29.50794 -27.24130 -26.53763 -23.25635 -23.07237 -20.60072 -19.49962 -17.03286 -16.60856 -15.82902 -15.09342 -14.74912 -14.55447 -14.14386 -13.38268 -13.14229 -12.90465 -12.36841 -12.26686 -11.58041 -11.30971 -11.28491 -11.12071 -11.01085 -10.90121 -10.44917 -10.05184 -9.88142 -9.30488 -8.66383 -8.37820 -7.86468 -6.03577 -4.22405 2.15142 3.29144 3.33541 3.33582 3.35232 3.51873 4.36541 4.43988 4.89266 5.05304 5.22477 5.28153 5.53302 5.69387 5.73209 5.79146 5.90246 5.93162 6.16013 6.16884 6.41736 6.46941 6.63610 7.12217 7.55190 7.80214 8.09257 8.50179 8.79739 9.39124 9.54913 11.00128 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.048721 B = 0.007871 C = 0.007452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.562851 B = 3556.507472 C = 3756.485063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.008 3.992 3 C -0.148 4.148 4 C 0.168 3.832 5 N -0.470 5.470 6 C 0.004 3.996 7 C 0.301 3.699 8 H 0.073 0.927 9 O -0.556 6.556 10 C -0.564 4.564 11 H 0.055 0.945 12 C 0.080 3.920 13 N -0.859 5.859 14 Si 0.895 3.105 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.276 1.276 18 C -0.105 4.105 19 O -0.212 6.212 20 H 0.060 0.940 21 H 0.067 0.933 22 H 0.061 0.939 23 H 0.108 0.892 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.355 0.645 28 H 0.263 0.737 29 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.010 10.151 5.116 13.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.011 4.011 3 C -0.206 4.206 4 C -0.039 4.039 5 N -0.200 5.200 6 C -0.116 4.116 7 C 0.242 3.758 8 H 0.090 0.910 9 O -0.358 6.358 10 C -0.602 4.602 11 H 0.073 0.927 12 C -0.126 4.126 13 N -0.495 5.495 14 Si 0.722 3.278 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.174 4.174 19 O -0.100 6.100 20 H 0.079 0.921 21 H 0.086 0.914 22 H 0.080 0.920 23 H 0.126 0.874 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.200 0.800 28 H 0.073 0.927 29 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -8.035 9.326 5.088 13.320 hybrid contribution 1.113 0.965 -0.628 1.601 sum -6.922 10.291 4.461 13.181 Atomic orbital electron populations 1.21866 0.93422 1.02719 1.02499 1.19559 0.96052 0.95271 0.90248 1.21868 1.01912 0.94306 1.02480 1.26091 0.98471 0.94454 0.84836 1.70288 1.14377 1.11749 1.23598 1.23703 0.99280 1.01200 0.87457 1.17933 0.91162 0.79288 0.87400 0.90965 1.86478 1.85183 1.40548 1.23621 1.21455 0.94670 0.95598 1.48448 0.92667 1.25017 0.98862 0.94682 0.94045 1.70057 1.34332 1.02075 1.43019 0.86634 0.84164 0.78202 0.78802 1.20078 1.21065 1.20110 1.24632 1.02589 0.92974 0.97172 1.84286 1.59634 1.48454 1.17580 0.92071 0.91383 0.92023 0.87409 0.91392 0.91970 0.92059 0.80018 0.92717 0.77373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.18 37.16 0.34 -1.24 15 2 C 0.01 0.11 3.39 -91.77 -0.31 -0.21 15 3 C -0.15 -1.64 9.17 37.15 0.34 -1.29 15 4 C 0.17 3.10 6.85 -12.94 -0.09 3.02 15 5 N -0.47 -10.42 10.99 -7.35 -0.08 -10.50 15 6 C 0.00 0.09 6.00 -82.81 -0.50 -0.41 15 7 C 0.30 8.05 3.30 -29.03 -0.10 7.95 15 8 H 0.07 2.01 8.14 -51.93 -0.42 1.59 15 9 O -0.56 -15.40 12.65 -35.23 -0.45 -15.85 15 10 C -0.56 -15.91 8.75 -34.44 -0.30 -16.21 15 11 H 0.06 1.56 7.74 -52.49 -0.41 1.16 15 12 C 0.08 2.27 5.40 -17.82 -0.10 2.17 15 13 N -0.86 -25.43 12.84 55.43 0.71 -24.72 15 14 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 15 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 16 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 18 C -0.10 -2.12 12.08 29.36 0.35 -1.76 15 19 O -0.21 -4.00 10.78 5.38 0.06 -3.94 15 20 H 0.06 0.66 8.14 -51.93 -0.42 0.24 15 21 H 0.07 0.55 8.14 -51.93 -0.42 0.13 15 22 H 0.06 0.71 8.14 -51.93 -0.42 0.28 15 23 H 0.11 1.35 8.14 -51.93 -0.42 0.93 15 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 15 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 27 H 0.36 9.22 8.85 45.56 0.40 9.63 15 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 29 H 0.21 3.52 8.06 -52.49 -0.42 3.10 15 LS Contribution 260.31 15.07 3.92 3.92 Total: -1.00 -32.27 260.31 -4.15 -36.42 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -2.94 Total: 6.26 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -0.35 Total: -7.99 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.63 Total: -35.22 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.39 Total: -19.79 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.27 -4.15 -36.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261241460.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.187 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds