Wall clock time and date at job start Mon Mar 30 2020 02:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 N 1.30251 * 125.61820 * 239.72124 * 4 2 1 6 6 C 1.34482 * 108.70003 * 179.84008 * 5 4 2 7 7 C 1.50696 * 126.17052 * 180.16821 * 6 5 4 8 8 H 1.08997 * 109.47026 * 145.27320 * 7 6 5 9 9 O 1.42898 * 109.47087 * 25.27068 * 7 6 5 10 10 C 1.50704 * 109.47034 * 265.27286 * 7 6 5 11 11 H 1.08001 * 119.99847 * 359.97438 * 10 7 6 12 12 C 1.37876 * 119.99726 * 179.97438 * 10 7 6 13 13 N 1.31511 * 120.00210 * 0.02562 * 12 10 7 14 14 Si 1.86801 * 119.99689 * 180.02562 * 12 10 7 15 15 H 1.48496 * 109.47399 * 60.00316 * 14 12 10 16 16 H 1.48504 * 109.47111 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47038 * 299.99963 * 14 12 10 18 18 C 1.34339 * 107.66399 * 0.41979 * 6 5 4 19 19 O 1.33960 * 125.61443 * 60.02513 * 4 2 1 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 0.96707 * 114.00118 * 300.00587 * 9 7 6 28 28 H 0.97002 * 120.00404 * 179.97438 * 13 12 10 29 29 H 1.07994 * 126.44111 * 179.77047 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 7 2.7885 -1.7710 -1.2385 6 6 3.0285 -2.1198 -2.5150 7 6 3.8564 -3.2914 -2.9762 8 1 3.4259 -3.7037 -3.8887 9 8 3.8690 -4.2954 -1.9595 10 6 5.2664 -2.8341 -3.2481 11 1 5.5359 -1.7985 -3.1019 12 6 6.2124 -3.7378 -3.6834 13 7 5.8841 -4.9987 -3.8619 14 14 7.9603 -3.1711 -4.0197 15 1 8.5464 -2.6093 -2.7763 16 1 8.7762 -4.3256 -4.4743 17 1 7.9477 -2.1278 -5.0764 18 6 2.4016 -1.2322 -3.3048 19 8 1.7794 -0.3519 -2.4962 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 4.2398 -3.9978 -1.1173 28 1 6.5495 -5.6344 -4.1685 29 1 2.3969 -1.2256 -4.3847 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261241460.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:02 Heat of formation + Delta-G solvation = -69.462591 kcal Electronic energy + Delta-G solvation = -13888.720932 eV Core-core repulsion = 11391.155604 eV Total energy + Delta-G solvation = -2497.565328 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.18717 -37.90596 -36.52983 -35.21640 -34.31602 -31.23073 -28.51166 -28.08444 -25.22454 -24.36340 -22.26630 -20.94829 -19.17488 -18.14292 -17.40771 -16.72195 -16.63678 -16.14965 -15.43837 -15.16042 -14.79302 -14.15124 -14.05720 -13.44055 -13.15036 -13.03747 -12.80940 -12.57054 -12.30139 -12.19079 -11.95581 -11.92241 -11.57808 -11.30947 -10.79139 -10.46516 -9.57289 -8.18703 -6.46495 0.61716 1.38773 1.41263 1.49716 1.83127 1.89694 2.38224 3.02268 3.10344 3.89822 4.05619 4.10398 4.16551 4.37945 4.42240 4.74040 4.77325 4.88175 4.91102 5.02205 5.07697 5.30834 5.31587 5.39082 5.54636 5.60541 5.95250 6.59209 6.89464 7.23764 7.39834 8.85088 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.048721 B = 0.007871 C = 0.007452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.562851 B = 3556.507472 C = 3756.485063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.004 3.996 3 C -0.142 4.142 4 C 0.183 3.817 5 N -0.508 5.508 6 C -0.035 4.035 7 C 0.301 3.699 8 H 0.050 0.950 9 O -0.571 6.571 10 C -0.577 4.577 11 H 0.049 0.951 12 C 0.031 3.969 13 N -0.896 5.896 14 Si 0.966 3.034 15 H -0.272 1.272 16 H -0.278 1.278 17 H -0.265 1.265 18 C -0.092 4.092 19 O -0.205 6.205 20 H 0.061 0.939 21 H 0.103 0.897 22 H 0.049 0.951 23 H 0.113 0.887 24 H 0.103 0.897 25 H 0.046 0.954 26 H 0.061 0.939 27 H 0.358 0.642 28 H 0.266 0.734 29 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.249 12.161 5.676 15.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.015 4.015 3 C -0.200 4.200 4 C -0.024 4.024 5 N -0.238 5.238 6 C -0.154 4.154 7 C 0.243 3.757 8 H 0.068 0.932 9 O -0.374 6.374 10 C -0.615 4.615 11 H 0.067 0.933 12 C -0.172 4.172 13 N -0.532 5.532 14 Si 0.790 3.210 15 H -0.198 1.198 16 H -0.203 1.203 17 H -0.189 1.189 18 C -0.161 4.161 19 O -0.092 6.092 20 H 0.080 0.920 21 H 0.121 0.879 22 H 0.068 0.932 23 H 0.131 0.869 24 H 0.122 0.878 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.203 0.797 28 H 0.075 0.925 29 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -8.279 11.340 5.649 15.134 hybrid contribution 1.100 0.370 -0.742 1.377 sum -7.179 11.710 4.907 14.586 Atomic orbital electron populations 1.21861 0.91182 1.02557 1.04300 1.19984 0.97799 0.96047 0.87715 1.21865 1.00974 0.92870 1.04301 1.27265 0.96126 0.93079 0.85948 1.70211 1.16507 1.13837 1.23229 1.23236 1.01417 1.01788 0.89003 1.17669 0.91322 0.80179 0.86554 0.93198 1.86422 1.85383 1.41597 1.24019 1.21672 0.95809 0.95381 1.48624 0.93262 1.25880 1.03246 0.94612 0.93505 1.70180 1.35912 1.03287 1.43837 0.85519 0.78614 0.78054 0.78833 1.19766 1.20298 1.18948 1.25012 1.00975 0.91826 0.98251 1.84329 1.59270 1.47895 1.17755 0.92021 0.87851 0.93179 0.86875 0.87805 0.93437 0.92034 0.79657 0.92491 0.74658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.18 71.98 0.66 -1.94 15 2 C 0.00 0.09 3.39 -11.54 -0.04 0.05 15 3 C -0.14 -2.72 9.17 71.98 0.66 -2.06 15 4 C 0.18 6.56 6.85 88.35 0.61 7.17 15 5 N -0.51 -22.64 10.99 -291.98 -3.21 -25.85 15 6 C -0.04 -1.69 6.00 41.26 0.25 -1.44 15 7 C 0.30 16.61 3.30 29.10 0.10 16.71 15 8 H 0.05 2.91 8.14 -2.39 -0.02 2.89 15 9 O -0.57 -32.78 12.65 -148.98 -1.88 -34.66 15 10 C -0.58 -33.13 8.75 25.60 0.22 -32.91 15 11 H 0.05 2.82 7.74 -2.91 -0.02 2.80 15 12 C 0.03 1.75 5.40 84.65 0.46 2.20 15 13 N -0.90 -53.85 12.84 21.45 0.28 -53.57 15 14 Si 0.97 43.97 29.54 68.60 2.03 46.00 15 15 H -0.27 -12.20 7.11 99.48 0.71 -11.49 15 16 H -0.28 -12.23 7.11 99.48 0.71 -11.53 15 17 H -0.26 -11.51 7.11 99.48 0.71 -10.81 15 18 C -0.09 -3.64 12.08 66.93 0.81 -2.83 15 19 O -0.21 -7.43 10.78 -3.67 -0.04 -7.47 15 20 H 0.06 1.14 8.14 -2.39 -0.02 1.12 15 21 H 0.10 1.21 8.14 -2.39 -0.02 1.19 15 22 H 0.05 1.04 8.14 -2.38 -0.02 1.02 15 23 H 0.11 2.60 8.14 -2.39 -0.02 2.58 15 24 H 0.10 1.27 8.14 -2.39 -0.02 1.25 15 25 H 0.05 1.05 8.14 -2.39 -0.02 1.03 15 26 H 0.06 1.18 8.14 -2.39 -0.02 1.16 15 27 H 0.36 19.38 8.85 -74.05 -0.66 18.72 15 28 H 0.27 15.01 8.31 -92.71 -0.77 14.24 15 29 H 0.24 7.70 8.06 -2.91 -0.02 7.68 15 Total: -1.00 -70.13 260.31 1.38 -68.74 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.49 Total: 21.86 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: 3.72 Total: -15.05 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -2.93 Total: -79.42 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -1.92 Total: -42.14 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -70.13 1.38 -68.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261241460.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.719 kcal (2) G-P(sol) polarization free energy of solvation -70.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds