Wall clock time and date at job start Mon Mar 30 2020 02:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 119.99593 * 2 1 4 4 H 1.48505 * 109.46976 * 85.79824 * 3 2 1 5 5 H 1.48502 * 109.47429 * 205.79433 * 3 2 1 6 6 H 1.48497 * 109.47457 * 325.79519 * 3 2 1 7 7 C 1.38950 * 120.00270 * 180.28061 * 2 1 3 8 8 H 1.08003 * 119.99914 * 198.44095 * 7 2 1 9 9 N 1.37100 * 119.99854 * 18.44224 * 7 2 1 10 10 C 1.48332 * 124.65178 * 211.24899 * 9 7 2 11 11 C 1.52449 * 103.43571 * 200.15284 * 10 9 7 12 12 H 1.09000 * 110.71384 * 81.29535 * 11 10 9 13 13 C 1.51696 * 118.09494 * 211.31419 * 11 10 9 14 14 O 1.44170 * 105.86665 * 174.23700 * 13 11 10 15 15 C 1.42330 * 117.05933 * 301.28799 * 14 13 11 16 16 C 1.54120 * 112.19782 * 53.22040 * 15 14 13 17 17 C 1.50986 * 106.52604 * 307.12347 * 16 15 14 18 18 H 1.09000 * 108.62824 * 304.90479 * 17 16 15 19 19 C 1.36342 * 124.66181 * 31.54272 * 9 7 2 20 20 O 1.21288 * 126.13943 * 6.08834 * 19 9 7 21 21 H 0.96994 * 120.00797 * 0.02562 * 1 2 3 22 22 H 1.09005 * 110.65026 * 318.72419 * 10 9 7 23 23 H 1.08998 * 110.65384 * 81.80721 * 10 9 7 24 24 H 1.08995 * 110.16861 * 293.32303 * 13 11 10 25 25 H 1.08999 * 110.16549 * 55.15690 * 13 11 10 26 26 H 1.09004 * 108.93819 * 173.92135 * 15 14 13 27 27 H 1.08996 * 108.93854 * 292.52059 * 15 14 13 28 28 H 1.08996 * 110.03899 * 187.87038 * 16 15 14 29 29 H 1.09001 * 110.03582 * 66.37046 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4066 2.0977 1.3964 5 1 3.5872 1.4163 -0.6092 6 1 1.4927 2.6254 -0.7870 7 6 2.0089 -1.2033 -0.0059 8 1 3.0474 -1.2287 0.2899 9 7 1.3763 -2.3583 -0.3872 10 6 1.6939 -3.7076 0.1406 11 6 1.1261 -4.6451 -0.9190 12 1 1.8167 -4.7437 -1.7565 13 6 0.6049 -5.9975 -0.4710 14 8 0.0135 -6.5990 -1.6401 15 6 -1.0465 -5.8870 -2.2688 16 6 -0.6545 -4.4344 -2.6028 17 6 -0.1356 -3.8244 -1.3228 18 1 -0.8958 -3.9376 -0.5500 19 6 0.3727 -2.4251 -1.3077 20 8 -0.0330 -1.5092 -1.9914 21 1 -0.4851 0.8399 -0.0004 22 1 2.7718 -3.8399 0.2342 23 1 1.2009 -3.8715 1.0989 24 1 1.4258 -6.6144 -0.1055 25 1 -0.1474 -5.8711 0.3076 26 1 -1.3198 -6.4005 -3.1906 27 1 -1.9092 -5.8762 -1.6028 28 1 -1.5273 -3.8829 -2.9523 29 1 0.1252 -4.4237 -3.3645 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261255891.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:38 Heat of formation + Delta-G solvation = -63.950640 kcal Electronic energy + Delta-G solvation = -14608.526229 eV Core-core repulsion = 12111.199918 eV Total energy + Delta-G solvation = -2497.326312 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.12806 -37.42727 -34.66474 -33.27397 -31.67394 -30.34234 -26.11224 -26.01752 -23.23241 -22.19216 -20.11440 -19.07573 -16.78300 -16.00424 -15.49479 -15.15924 -14.67767 -14.48871 -14.17208 -13.37956 -13.21678 -12.62793 -12.36209 -12.10925 -11.80746 -11.24994 -10.95328 -10.89632 -10.58912 -10.51823 -10.29998 -10.09248 -9.86697 -9.49230 -8.87491 -8.04006 -7.19503 -6.12525 -3.77420 3.27933 3.36435 3.39679 3.90773 4.21963 4.28561 4.77222 4.92766 5.13980 5.18229 5.31164 5.39600 5.55974 5.67366 5.79400 5.81567 5.92715 6.05449 6.20391 6.28895 6.38138 6.41269 6.58996 6.72625 7.42800 7.53561 8.09262 8.91259 9.21909 9.53232 10.35815 10.96028 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.062775 B = 0.009733 C = 0.008849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.928772 B = 2876.063710 C = 3163.441628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.047 3.953 3 Si 0.917 3.083 4 H -0.281 1.281 5 H -0.271 1.271 6 H -0.283 1.283 7 C -0.334 4.334 8 H 0.083 0.917 9 N -0.469 5.469 10 C 0.112 3.888 11 C -0.146 4.146 12 H 0.091 0.909 13 C 0.083 3.917 14 O -0.394 6.394 15 C 0.068 3.932 16 C -0.128 4.128 17 C -0.131 4.131 18 H 0.082 0.918 19 C 0.490 3.510 20 O -0.525 6.525 21 H 0.265 0.735 22 H 0.064 0.936 23 H 0.053 0.947 24 H 0.096 0.904 25 H 0.056 0.944 26 H 0.090 0.910 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.247 -10.456 -0.424 10.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.162 4.162 3 Si 0.744 3.256 4 H -0.208 1.208 5 H -0.196 1.196 6 H -0.209 1.209 7 C -0.461 4.461 8 H 0.101 0.899 9 N -0.193 5.193 10 C -0.012 4.012 11 C -0.165 4.165 12 H 0.109 0.891 13 C 0.007 3.993 14 O -0.314 6.314 15 C -0.009 4.009 16 C -0.166 4.166 17 C -0.153 4.153 18 H 0.100 0.900 19 C 0.277 3.723 20 O -0.403 6.403 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.114 0.886 25 H 0.074 0.926 26 H 0.108 0.892 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.036 -9.958 -0.813 9.991 hybrid contribution 0.199 1.118 0.318 1.180 sum 0.163 -8.840 -0.494 8.855 Atomic orbital electron populations 1.69899 1.06319 1.27416 1.42567 1.25233 0.95049 0.99526 0.96426 0.86119 0.79626 0.82173 0.77710 1.20782 1.19580 1.20856 1.19059 0.94471 0.83958 1.48570 0.89890 1.44476 1.35377 1.04270 1.35196 1.21623 0.99494 0.84799 0.95305 1.22744 0.97911 0.95194 1.00649 0.89082 1.22413 0.96880 0.92981 0.87046 1.87724 1.52306 1.47695 1.43631 1.22591 0.88782 0.92408 0.97080 1.21711 1.02304 0.95110 0.97474 1.21544 0.97402 0.97371 0.98972 0.89992 1.19302 0.83378 0.87678 0.81929 1.90497 1.61945 1.43688 1.44130 0.92455 0.91791 0.92920 0.88565 0.92570 0.89220 0.93796 0.90307 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.36 11.16 55.50 0.62 -24.74 15 2 C 0.05 1.36 4.86 -17.47 -0.08 1.28 15 3 Si 0.92 22.02 29.59 -169.99 -5.03 16.99 15 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 7 C -0.33 -9.42 9.94 -14.93 -0.15 -9.57 15 8 H 0.08 2.20 7.90 -52.48 -0.41 1.79 15 9 N -0.47 -12.26 3.08 -113.99 -0.35 -12.61 15 10 C 0.11 2.19 6.95 -3.31 -0.02 2.17 15 11 C -0.15 -2.51 2.79 -90.05 -0.25 -2.76 15 12 H 0.09 1.59 8.08 -51.93 -0.42 1.17 15 13 C 0.08 1.16 6.75 36.50 0.25 1.41 15 14 O -0.39 -5.90 10.61 -35.23 -0.37 -6.28 15 15 C 0.07 0.95 6.82 37.74 0.26 1.21 15 16 C -0.13 -2.16 6.00 -27.16 -0.16 -2.33 15 17 C -0.13 -2.65 2.17 -92.14 -0.20 -2.85 15 18 H 0.08 1.65 7.75 -51.93 -0.40 1.25 15 19 C 0.49 13.10 6.92 -11.14 -0.08 13.02 15 20 O -0.53 -16.31 15.53 5.55 0.09 -16.22 15 21 H 0.27 7.75 8.31 -40.82 -0.34 7.41 15 22 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15 23 H 0.05 0.99 8.13 -51.93 -0.42 0.56 15 24 H 0.10 1.11 8.14 -51.93 -0.42 0.69 15 25 H 0.06 0.75 7.89 -51.93 -0.41 0.34 15 26 H 0.09 1.04 8.14 -51.93 -0.42 0.62 15 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 15 28 H 0.08 1.34 8.14 -51.93 -0.42 0.92 15 29 H 0.07 1.22 8.09 -51.93 -0.42 0.80 15 LS Contribution 241.37 15.07 3.64 3.64 Total: -1.00 -34.13 241.37 -5.59 -39.73 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -3.74 Total: -2.09 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -0.44 Total: 1.59 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.27 Total: -37.35 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.29 Total: -22.50 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -34.13 -5.59 -39.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261255891.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.223 kcal (2) G-P(sol) polarization free energy of solvation -34.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds