Wall clock time and date at job start Mon Mar 30 2020 02:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 119.99593 * 2 1 4 4 H 1.48505 * 109.46976 * 85.79824 * 3 2 1 5 5 H 1.48502 * 109.47429 * 205.79433 * 3 2 1 6 6 H 1.48497 * 109.47457 * 325.79519 * 3 2 1 7 7 C 1.38950 * 120.00270 * 180.28061 * 2 1 3 8 8 H 1.08003 * 119.99914 * 198.44095 * 7 2 1 9 9 N 1.37100 * 119.99854 * 18.44224 * 7 2 1 10 10 C 1.48332 * 124.65178 * 211.24899 * 9 7 2 11 11 C 1.52449 * 103.43571 * 200.15284 * 10 9 7 12 12 H 1.09000 * 110.71384 * 81.29535 * 11 10 9 13 13 C 1.51696 * 118.09494 * 211.31419 * 11 10 9 14 14 O 1.44170 * 105.86665 * 174.23700 * 13 11 10 15 15 C 1.42330 * 117.05933 * 301.28799 * 14 13 11 16 16 C 1.54120 * 112.19782 * 53.22040 * 15 14 13 17 17 C 1.50986 * 106.52604 * 307.12347 * 16 15 14 18 18 H 1.09000 * 108.62824 * 304.90479 * 17 16 15 19 19 C 1.36342 * 124.66181 * 31.54272 * 9 7 2 20 20 O 1.21288 * 126.13943 * 6.08834 * 19 9 7 21 21 H 0.96994 * 120.00797 * 0.02562 * 1 2 3 22 22 H 1.09005 * 110.65026 * 318.72419 * 10 9 7 23 23 H 1.08998 * 110.65384 * 81.80721 * 10 9 7 24 24 H 1.08995 * 110.16861 * 293.32303 * 13 11 10 25 25 H 1.08999 * 110.16549 * 55.15690 * 13 11 10 26 26 H 1.09004 * 108.93819 * 173.92135 * 15 14 13 27 27 H 1.08996 * 108.93854 * 292.52059 * 15 14 13 28 28 H 1.08996 * 110.03899 * 187.87038 * 16 15 14 29 29 H 1.09001 * 110.03582 * 66.37046 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4066 2.0977 1.3964 5 1 3.5872 1.4163 -0.6092 6 1 1.4927 2.6254 -0.7870 7 6 2.0089 -1.2033 -0.0059 8 1 3.0474 -1.2287 0.2899 9 7 1.3763 -2.3583 -0.3872 10 6 1.6939 -3.7076 0.1406 11 6 1.1261 -4.6451 -0.9190 12 1 1.8167 -4.7437 -1.7565 13 6 0.6049 -5.9975 -0.4710 14 8 0.0135 -6.5990 -1.6401 15 6 -1.0465 -5.8870 -2.2688 16 6 -0.6545 -4.4344 -2.6028 17 6 -0.1356 -3.8244 -1.3228 18 1 -0.8958 -3.9376 -0.5500 19 6 0.3727 -2.4251 -1.3077 20 8 -0.0330 -1.5092 -1.9914 21 1 -0.4851 0.8399 -0.0004 22 1 2.7718 -3.8399 0.2342 23 1 1.2009 -3.8715 1.0989 24 1 1.4258 -6.6144 -0.1055 25 1 -0.1474 -5.8711 0.3076 26 1 -1.3198 -6.4005 -3.1906 27 1 -1.9092 -5.8762 -1.6028 28 1 -1.5273 -3.8829 -2.9523 29 1 0.1252 -4.4237 -3.3645 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261255891.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:38 Heat of formation + Delta-G solvation = -88.698542 kcal Electronic energy + Delta-G solvation = -14609.599379 eV Core-core repulsion = 12111.199918 eV Total energy + Delta-G solvation = -2498.399461 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.69844 -38.98399 -36.62199 -35.11703 -33.27685 -31.96615 -27.87672 -27.61024 -24.90539 -23.59301 -21.56353 -20.91623 -18.75332 -17.65349 -16.82330 -16.61259 -16.43525 -16.06680 -15.87506 -14.99230 -14.74271 -14.36988 -13.96200 -13.85316 -13.46988 -12.97773 -12.77953 -12.70084 -12.21664 -12.09252 -12.04822 -11.57837 -11.33431 -10.94480 -10.67093 -10.03604 -9.27312 -8.28485 -5.97260 1.35509 1.41983 1.51902 2.21264 2.32209 2.82032 3.12644 3.21424 3.32289 3.74071 3.81856 4.14983 4.24024 4.33523 4.42159 4.58064 4.68292 4.76520 4.80571 4.86383 4.93107 5.08221 5.13486 5.29741 5.36276 5.98976 6.31115 6.80528 7.17894 7.44724 8.30057 8.80606 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.062775 B = 0.009733 C = 0.008849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.928772 B = 2876.063710 C = 3163.441628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C -0.011 4.011 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.293 1.293 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.491 5.491 10 C 0.108 3.892 11 C -0.125 4.125 12 H 0.089 0.911 13 C 0.089 3.911 14 O -0.398 6.398 15 C 0.075 3.925 16 C -0.126 4.126 17 C -0.130 4.130 18 H 0.083 0.917 19 C 0.465 3.535 20 O -0.585 6.585 21 H 0.260 0.740 22 H 0.085 0.915 23 H 0.065 0.935 24 H 0.130 0.870 25 H 0.066 0.934 26 H 0.118 0.882 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.147 -12.389 0.091 12.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.216 4.216 3 Si 0.810 3.190 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.219 1.219 7 C -0.481 4.481 8 H 0.113 0.887 9 N -0.214 5.214 10 C -0.014 4.014 11 C -0.144 4.144 12 H 0.107 0.893 13 C 0.013 3.987 14 O -0.317 6.317 15 C -0.002 4.002 16 C -0.164 4.164 17 C -0.152 4.152 18 H 0.101 0.899 19 C 0.255 3.745 20 O -0.467 6.467 21 H 0.070 0.930 22 H 0.103 0.897 23 H 0.083 0.917 24 H 0.148 0.852 25 H 0.085 0.915 26 H 0.136 0.864 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.900 -11.943 -0.261 11.979 hybrid contribution -0.046 1.687 0.159 1.695 sum 0.855 -10.255 -0.102 10.291 Atomic orbital electron populations 1.70041 1.08173 1.27821 1.44699 1.26277 0.95832 1.03424 0.96073 0.85060 0.78296 0.77220 0.78470 1.18717 1.18397 1.21939 1.19546 0.95331 0.85361 1.47905 0.88750 1.44887 1.35119 1.06143 1.35222 1.21866 1.01128 0.82062 0.96354 1.22734 0.95887 0.96209 0.99606 0.89284 1.22546 0.98105 0.91098 0.86944 1.87740 1.52499 1.47556 1.43909 1.22643 0.88779 0.90058 0.98700 1.21756 1.01718 0.97204 0.95716 1.21461 0.98944 0.93826 1.00977 0.89902 1.20434 0.83324 0.89687 0.81096 1.90431 1.63706 1.46306 1.46264 0.93043 0.89695 0.91662 0.85237 0.91531 0.86424 0.92545 0.91092 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -55.24 11.16 21.66 0.24 -55.00 15 2 C -0.01 -0.65 4.86 84.93 0.41 -0.24 15 3 Si 0.99 45.89 29.59 68.60 2.03 47.92 15 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 15 5 H -0.26 -11.46 7.11 99.48 0.71 -10.76 15 6 H -0.29 -13.99 7.11 99.48 0.71 -13.28 15 7 C -0.35 -20.14 9.94 84.04 0.84 -19.30 15 8 H 0.09 4.97 7.90 -2.91 -0.02 4.94 15 9 N -0.49 -25.77 3.08 -632.03 -1.95 -27.72 15 10 C 0.11 4.06 6.95 85.84 0.60 4.66 15 11 C -0.13 -4.01 2.79 -10.42 -0.03 -4.04 15 12 H 0.09 2.91 8.08 -2.39 -0.02 2.89 15 13 C 0.09 2.12 6.75 71.55 0.48 2.61 15 14 O -0.40 -10.26 10.61 -148.98 -1.58 -11.84 15 15 C 0.07 1.84 6.82 72.36 0.49 2.33 15 16 C -0.13 -4.12 6.00 30.32 0.18 -3.93 15 17 C -0.13 -5.19 2.17 -11.78 -0.03 -5.21 15 18 H 0.08 3.27 7.75 -2.39 -0.02 3.25 15 19 C 0.47 25.45 6.92 86.85 0.60 26.05 15 20 O -0.59 -37.94 15.53 -3.06 -0.05 -37.99 15 21 H 0.26 15.87 8.31 -92.71 -0.77 15.10 15 22 H 0.08 2.82 8.14 -2.38 -0.02 2.80 15 23 H 0.07 2.30 8.13 -2.39 -0.02 2.28 15 24 H 0.13 2.29 8.14 -2.39 -0.02 2.27 15 25 H 0.07 1.49 7.89 -2.39 -0.02 1.47 15 26 H 0.12 2.27 8.14 -2.38 -0.02 2.25 15 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 15 28 H 0.07 2.41 8.14 -2.39 -0.02 2.39 15 29 H 0.07 2.20 8.09 -2.39 -0.02 2.18 15 Total: -1.00 -76.62 241.37 3.38 -73.24 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 1.13 Total: 8.48 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: 3.55 Total: 2.91 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -1.71 Total: -82.71 kcal Atomic # 8 Polarization: -48.21 SS G_CDS: -1.63 Total: -49.84 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -76.62 3.38 -73.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261255891.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.456 kcal (2) G-P(sol) polarization free energy of solvation -76.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds