Wall clock time and date at job start Mon Mar 30 2020 02:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 O 1.34040 * 126.77872 * 59.68146 * 4 2 1 6 6 N 1.20918 * 111.56777 * 179.83226 * 5 4 2 7 7 C 1.30176 * 111.60556 * 0.44735 * 6 5 4 8 8 C 1.35450 * 126.77645 * 240.00252 * 4 2 1 9 9 C 1.50707 * 128.00569 * 359.97114 * 8 4 2 10 10 H 1.08998 * 109.46773 * 325.00096 * 9 8 4 11 11 O 1.42898 * 109.47055 * 205.00352 * 9 8 4 12 12 C 1.50700 * 109.47156 * 85.00300 * 9 8 4 13 13 H 1.08002 * 119.99794 * 0.02562 * 12 9 8 14 14 C 1.37873 * 120.00003 * 179.97438 * 12 9 8 15 15 N 1.31512 * 119.99936 * 179.97438 * 14 12 9 16 16 Si 1.86798 * 120.00093 * 0.02562 * 14 12 9 17 17 H 1.48498 * 109.47541 * 89.99607 * 16 14 12 18 18 H 1.48495 * 109.46990 * 209.99709 * 16 14 12 19 19 H 1.48505 * 109.46731 * 329.99356 * 16 14 12 20 20 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 23 23 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 24 24 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 25 25 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 27 27 H 1.08000 * 126.80597 * 179.75759 * 7 6 5 28 28 H 0.96703 * 114.00407 * 300.00549 * 11 9 8 29 29 H 0.96995 * 120.00083 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 1.7889 -0.3763 -2.5056 6 7 2.3316 -1.1348 -3.2752 7 6 2.9900 -2.0654 -2.6468 8 6 2.8141 -1.8159 -1.2664 9 6 3.3682 -2.5987 -0.1038 10 1 3.6083 -1.9167 0.7118 11 8 4.5518 -3.2865 -0.5137 12 6 2.3421 -3.5988 0.3630 13 1 1.3847 -3.6616 -0.1328 14 6 2.6260 -4.4343 1.4224 15 7 1.7303 -5.3067 1.8301 16 14 4.2822 -4.3261 2.2795 17 1 4.1997 -3.3488 3.3944 18 1 4.6493 -5.6607 2.8172 19 1 5.3142 -3.8829 1.3079 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 3.5585 -2.8688 -3.0917 28 1 4.4125 -3.9117 -1.2382 29 1 1.9299 -5.8943 2.5756 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261269069.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:36 Heat of formation + Delta-G solvation = -1.205154 kcal Electronic energy + Delta-G solvation = -14329.272279 eV Core-core repulsion = 11834.666816 eV Total energy + Delta-G solvation = -2494.605463 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.28638 -36.65398 -35.43769 -32.90145 -32.36168 -30.29114 -27.47403 -26.93359 -23.54846 -22.95786 -20.83705 -19.70217 -17.54388 -16.83553 -16.42350 -15.14784 -14.78190 -14.72542 -13.78805 -13.50895 -13.02574 -12.96266 -12.84591 -12.00717 -11.90609 -11.30472 -11.14047 -11.00486 -10.97805 -10.80050 -10.48094 -10.27832 -9.67606 -9.25970 -8.85498 -8.63896 -8.19996 -6.21697 -4.34651 2.09337 2.96285 3.31304 3.42091 3.66308 3.69436 4.43823 4.92014 4.97207 5.08674 5.23636 5.35842 5.59339 5.70517 5.76555 5.82385 5.98665 6.04070 6.12486 6.21523 6.31469 6.52081 6.57221 6.69140 7.11069 7.40378 8.19449 8.69769 8.83285 8.89087 9.40215 10.88349 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.031862 B = 0.011706 C = 0.010358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.573522 B = 2391.425716 C = 2702.484509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.008 4.008 3 C -0.147 4.147 4 C -0.042 4.042 5 O 0.087 5.913 6 N -0.383 5.383 7 C -0.006 4.006 8 C -0.176 4.176 9 C 0.263 3.737 10 H 0.069 0.931 11 O -0.575 6.575 12 C -0.558 4.558 13 H 0.074 0.926 14 C 0.087 3.913 15 N -0.887 5.887 16 Si 0.866 3.134 17 H -0.285 1.285 18 H -0.293 1.293 19 H -0.217 1.217 20 H 0.062 0.938 21 H 0.065 0.935 22 H 0.055 0.945 23 H 0.108 0.892 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.183 0.817 28 H 0.358 0.642 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.126 9.417 -2.732 9.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 C -0.205 4.205 4 C -0.105 4.105 5 O 0.021 5.979 6 N -0.088 5.088 7 C -0.183 4.183 8 C -0.180 4.180 9 C 0.205 3.795 10 H 0.086 0.914 11 O -0.381 6.381 12 C -0.595 4.595 13 H 0.092 0.908 14 C -0.118 4.118 15 N -0.523 5.523 16 Si 0.692 3.308 17 H -0.211 1.211 18 H -0.220 1.220 19 H -0.140 1.140 20 H 0.081 0.919 21 H 0.084 0.916 22 H 0.074 0.926 23 H 0.126 0.874 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.200 0.800 28 H 0.205 0.795 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.148 9.935 -3.452 10.581 hybrid contribution 0.603 -0.978 0.739 1.366 sum 1.751 8.957 -2.713 9.522 Atomic orbital electron populations 1.21819 0.93652 1.03026 1.01738 1.19694 0.96459 0.95095 0.91464 1.21880 1.01375 0.95036 1.02165 1.24017 1.01708 0.98224 0.86544 1.84643 1.55634 1.43942 1.13676 1.73749 1.12282 1.04852 1.17896 1.24709 1.01872 0.99903 0.91857 1.22337 1.01739 0.97042 0.96894 1.18188 0.83728 0.90261 0.87312 0.91400 1.86705 1.36377 1.59006 1.55962 1.21340 1.01846 1.19069 1.17226 0.90834 1.24971 0.97194 0.93861 0.95818 1.69935 1.34878 1.20951 1.26550 0.87091 0.86429 0.77370 0.79879 1.21103 1.21952 1.13986 0.91902 0.91555 0.92600 0.87418 0.91778 0.92428 0.92327 0.79974 0.79511 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.18 37.16 0.34 -1.73 15 2 C -0.01 -0.12 3.32 -91.77 -0.30 -0.43 15 3 C -0.15 -1.85 9.17 37.16 0.34 -1.51 15 4 C -0.04 -0.78 6.00 -35.30 -0.21 -0.99 15 5 O 0.09 1.63 11.20 17.18 0.19 1.83 15 6 N -0.38 -7.49 12.07 30.35 0.37 -7.13 15 7 C -0.01 -0.11 11.56 -17.06 -0.20 -0.31 15 8 C -0.18 -3.63 5.35 -104.42 -0.56 -4.18 15 9 C 0.26 5.97 2.44 -29.03 -0.07 5.90 15 10 H 0.07 1.54 7.04 -51.93 -0.37 1.18 15 11 O -0.57 -12.58 9.98 -35.23 -0.35 -12.93 15 12 C -0.56 -14.86 9.33 -34.44 -0.32 -15.18 15 13 H 0.07 2.18 7.98 -52.49 -0.42 1.76 15 14 C 0.09 2.39 5.47 -17.82 -0.10 2.30 15 15 N -0.89 -26.11 13.96 55.43 0.77 -25.34 15 16 Si 0.87 20.75 26.99 -169.99 -4.59 16.16 15 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 15 19 H -0.22 -5.09 5.31 56.52 0.30 -4.79 15 20 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 21 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 22 H 0.05 0.74 8.14 -51.93 -0.42 0.31 15 23 H 0.11 1.81 7.24 -51.93 -0.38 1.44 15 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 15 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 27 H 0.18 2.98 7.78 -52.49 -0.41 2.57 15 28 H 0.36 6.86 8.42 45.56 0.38 7.24 15 29 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 LS Contribution 251.14 15.07 3.78 3.78 Total: -1.00 -30.38 251.14 -3.86 -34.24 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -2.96 Total: 5.53 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -1.08 Total: -16.14 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 1.14 Total: -32.47 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -0.16 Total: -11.11 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.59 Total: 16.16 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.38 -3.86 -34.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261269069.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.033 kcal (2) G-P(sol) polarization free energy of solvation -30.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds