Wall clock time and date at job start Mon Mar 30 2020 02:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46834 * 2 1 4 4 C 1.50698 * 109.46881 * 119.99698 * 2 1 3 5 5 O 1.34042 * 126.77963 * 299.99620 * 4 2 1 6 6 N 1.20922 * 111.57075 * 180.02562 * 5 4 2 7 7 C 1.30177 * 111.59986 * 359.74802 * 6 5 4 8 8 C 1.35448 * 126.77560 * 120.00875 * 4 2 1 9 9 C 1.50703 * 128.00862 * 359.95455 * 8 4 2 10 10 H 1.08998 * 109.47145 * 35.00642 * 9 8 4 11 11 O 1.42896 * 109.47115 * 155.00787 * 9 8 4 12 12 C 1.50700 * 109.47148 * 275.00620 * 9 8 4 13 13 H 1.08002 * 119.99770 * 0.02562 * 12 9 8 14 14 C 1.37871 * 120.00083 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00147 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00278 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.47228 * 179.97438 * 16 14 12 18 18 H 1.48501 * 109.46793 * 300.00001 * 16 14 12 19 19 H 1.48500 * 109.47000 * 60.00094 * 16 14 12 20 20 H 1.08995 * 109.47464 * 300.00330 * 1 2 3 21 21 H 1.09006 * 109.47239 * 60.00137 * 1 2 3 22 22 H 1.09005 * 109.47083 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47464 * 239.99669 * 2 1 3 24 24 H 1.09003 * 109.46953 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.47172 * 299.99332 * 3 2 1 26 26 H 1.08996 * 109.47065 * 60.00065 * 3 2 1 27 27 H 1.08000 * 126.80043 * 180.24902 * 7 6 5 28 28 H 0.96699 * 114.00348 * 60.00095 * 11 9 8 29 29 H 0.97005 * 119.99661 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0322 -0.7103 1.2305 5 8 1.7937 -0.3728 2.5056 6 7 2.3325 -1.1341 3.2753 7 6 2.9866 -2.0678 2.6468 8 6 2.8141 -1.8158 1.2663 9 6 3.3672 -2.5993 0.1038 10 1 3.6066 -1.9179 -0.7125 11 8 4.5511 -3.2870 0.5131 12 6 2.3407 -3.5997 -0.3616 13 1 1.3834 -3.6616 0.1346 14 6 2.6233 -4.4351 -1.4213 15 7 3.7888 -4.3594 -2.0257 16 14 1.3506 -5.6747 -1.9987 17 1 1.8952 -6.4460 -3.1448 18 1 1.0243 -6.6034 -0.8868 19 1 0.1205 -4.9597 -2.4237 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 3.1299 1.4426 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 3.5510 -2.8739 3.0917 28 1 4.4123 -3.9117 1.2380 29 1 4.4496 -3.7155 -1.7261 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261269070.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:39 Heat of formation + Delta-G solvation = -13.640317 kcal Electronic energy + Delta-G solvation = -14324.684678 eV Core-core repulsion = 11829.539986 eV Total energy + Delta-G solvation = -2495.144692 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.27953 -36.60757 -35.43335 -32.90883 -32.24530 -30.23968 -26.96252 -26.72126 -23.47923 -22.93933 -21.05639 -19.78172 -17.47214 -16.81354 -16.61498 -15.27294 -14.87000 -13.98190 -13.76928 -13.50418 -13.01019 -12.89558 -12.79604 -12.18695 -12.03162 -11.16736 -11.03929 -11.00827 -10.84161 -10.46796 -10.30315 -10.18718 -9.90430 -9.56376 -8.80929 -8.53768 -8.02395 -6.45227 -4.31062 2.09231 2.96957 3.37519 3.38472 3.57662 3.69667 4.44194 4.93376 4.97317 5.18426 5.24117 5.34601 5.61956 5.72272 5.79060 5.86104 5.97959 6.03767 6.13237 6.25449 6.30814 6.46721 6.56900 6.72760 7.24495 7.82303 8.24873 8.74032 8.82123 8.92618 9.53290 10.93357 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.030124 B = 0.011300 C = 0.009918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.259200 B = 2477.377835 C = 2822.404084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.007 4.007 3 C -0.147 4.147 4 C -0.047 4.047 5 O 0.086 5.914 6 N -0.384 5.384 7 C -0.008 4.008 8 C -0.176 4.176 9 C 0.280 3.720 10 H 0.064 0.936 11 O -0.576 6.576 12 C -0.640 4.640 13 H 0.050 0.950 14 C 0.037 3.963 15 N -0.888 5.888 16 Si 1.066 2.934 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.287 1.287 20 H 0.055 0.945 21 H 0.062 0.938 22 H 0.063 0.937 23 H 0.107 0.893 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.182 0.818 28 H 0.356 0.644 29 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.372 7.087 3.141 8.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 C -0.204 4.204 4 C -0.110 4.110 5 O 0.020 5.980 6 N -0.088 5.088 7 C -0.186 4.186 8 C -0.180 4.180 9 C 0.223 3.777 10 H 0.081 0.919 11 O -0.380 6.380 12 C -0.678 4.678 13 H 0.069 0.931 14 C -0.172 4.172 15 N -0.522 5.522 16 Si 0.894 3.106 17 H -0.206 1.206 18 H -0.214 1.214 19 H -0.213 1.213 20 H 0.074 0.926 21 H 0.081 0.919 22 H 0.082 0.918 23 H 0.125 0.875 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.199 0.801 28 H 0.201 0.799 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.563 6.570 2.852 8.492 hybrid contribution 0.235 0.371 1.053 1.141 sum -4.328 6.941 3.905 9.064 Atomic orbital electron populations 1.21815 0.93792 1.02772 1.01774 1.19672 0.96278 0.95136 0.91510 1.21872 1.01435 0.95001 1.02101 1.24001 1.02164 0.98337 0.86468 1.84634 1.55953 1.43692 1.13729 1.73744 1.12504 1.04669 1.17911 1.24712 1.01959 0.99936 0.91984 1.22578 1.01269 0.97029 0.97108 1.17995 0.83551 0.89812 0.86378 0.91882 1.86502 1.36488 1.58709 1.56301 1.22300 1.02087 1.22960 1.20426 0.93118 1.25815 0.99698 0.98564 0.93113 1.70658 1.05736 1.35069 1.40765 0.83595 0.74639 0.75888 0.76472 1.20601 1.21363 1.21295 0.92577 0.91886 0.91805 0.87463 0.92430 0.91779 0.92360 0.80109 0.79855 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.17 37.16 0.34 -1.71 15 2 C -0.01 -0.11 3.32 -91.77 -0.30 -0.41 15 3 C -0.15 -1.94 9.18 37.16 0.34 -1.60 15 4 C -0.05 -0.90 6.00 -35.31 -0.21 -1.11 15 5 O 0.09 1.66 11.20 17.17 0.19 1.85 15 6 N -0.38 -7.72 12.07 30.35 0.37 -7.35 15 7 C -0.01 -0.17 11.56 -17.06 -0.20 -0.36 15 8 C -0.18 -3.80 5.35 -104.42 -0.56 -4.36 15 9 C 0.28 6.86 2.56 -29.03 -0.07 6.79 15 10 H 0.06 1.63 7.48 -51.93 -0.39 1.24 15 11 O -0.58 -14.06 11.86 -35.23 -0.42 -14.48 15 12 C -0.64 -17.08 8.74 -34.44 -0.30 -17.38 15 13 H 0.05 1.38 7.74 -52.49 -0.41 0.97 15 14 C 0.04 1.02 5.40 -17.82 -0.10 0.92 15 15 N -0.89 -25.97 13.53 55.43 0.75 -25.22 15 16 Si 1.07 24.19 29.90 -169.99 -5.08 19.10 15 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 18 H -0.29 -6.30 7.11 56.52 0.40 -5.90 15 19 H -0.29 -6.20 7.11 56.52 0.40 -5.79 15 20 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 21 H 0.06 0.75 8.14 -51.93 -0.42 0.32 15 22 H 0.06 1.01 8.14 -51.93 -0.42 0.58 15 23 H 0.11 1.91 7.24 -51.93 -0.38 1.53 15 24 H 0.06 0.79 8.14 -51.93 -0.42 0.36 15 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 15 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 15 27 H 0.18 3.14 7.78 -52.49 -0.41 2.74 15 28 H 0.36 7.71 8.42 45.56 0.38 8.09 15 29 H 0.28 8.43 6.47 -40.82 -0.26 8.16 15 LS Contribution 255.12 15.07 3.84 3.84 Total: -1.00 -30.06 255.12 -4.20 -34.26 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -2.79 Total: 7.22 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -1.06 Total: -19.23 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 1.12 Total: -32.57 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.23 Total: -12.63 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -5.08 Total: 19.10 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.06 -4.20 -34.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261269070.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.618 kcal (2) G-P(sol) polarization free energy of solvation -30.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds