Wall clock time and date at job start Mon Mar 30 2020 02:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46834 * 2 1 4 4 C 1.50698 * 109.46881 * 119.99698 * 2 1 3 5 5 O 1.34042 * 126.77963 * 299.99620 * 4 2 1 6 6 N 1.20922 * 111.57075 * 180.02562 * 5 4 2 7 7 C 1.30177 * 111.59986 * 359.74802 * 6 5 4 8 8 C 1.35448 * 126.77560 * 120.00875 * 4 2 1 9 9 C 1.50703 * 128.00862 * 359.95455 * 8 4 2 10 10 H 1.08998 * 109.47145 * 35.00642 * 9 8 4 11 11 O 1.42896 * 109.47115 * 155.00787 * 9 8 4 12 12 C 1.50700 * 109.47148 * 275.00620 * 9 8 4 13 13 H 1.08002 * 119.99770 * 0.02562 * 12 9 8 14 14 C 1.37871 * 120.00083 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00147 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00278 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.47228 * 179.97438 * 16 14 12 18 18 H 1.48501 * 109.46793 * 300.00001 * 16 14 12 19 19 H 1.48500 * 109.47000 * 60.00094 * 16 14 12 20 20 H 1.08995 * 109.47464 * 300.00330 * 1 2 3 21 21 H 1.09006 * 109.47239 * 60.00137 * 1 2 3 22 22 H 1.09005 * 109.47083 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47464 * 239.99669 * 2 1 3 24 24 H 1.09003 * 109.46953 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.47172 * 299.99332 * 3 2 1 26 26 H 1.08996 * 109.47065 * 60.00065 * 3 2 1 27 27 H 1.08000 * 126.80043 * 180.24902 * 7 6 5 28 28 H 0.96699 * 114.00348 * 60.00095 * 11 9 8 29 29 H 0.97005 * 119.99661 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0322 -0.7103 1.2305 5 8 1.7937 -0.3728 2.5056 6 7 2.3325 -1.1341 3.2753 7 6 2.9866 -2.0678 2.6468 8 6 2.8141 -1.8158 1.2663 9 6 3.3672 -2.5993 0.1038 10 1 3.6066 -1.9179 -0.7125 11 8 4.5511 -3.2870 0.5131 12 6 2.3407 -3.5997 -0.3616 13 1 1.3834 -3.6616 0.1346 14 6 2.6233 -4.4351 -1.4213 15 7 3.7888 -4.3594 -2.0257 16 14 1.3506 -5.6747 -1.9987 17 1 1.8952 -6.4460 -3.1448 18 1 1.0243 -6.6034 -0.8868 19 1 0.1205 -4.9597 -2.4237 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 3.1299 1.4426 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 3.5510 -2.8739 3.0917 28 1 4.4123 -3.9117 1.2380 29 1 4.4496 -3.7155 -1.7261 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261269070.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:39 Heat of formation + Delta-G solvation = -33.894449 kcal Electronic energy + Delta-G solvation = -14325.562963 eV Core-core repulsion = 11829.539986 eV Total energy + Delta-G solvation = -2496.022977 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -45.87213 -38.46596 -36.81021 -34.59801 -34.30356 -31.79803 -28.66283 -28.05452 -25.42249 -24.39459 -22.74487 -21.29610 -19.48051 -18.44950 -18.20795 -16.97345 -16.39426 -15.77966 -15.43050 -15.11278 -14.65285 -14.41373 -14.29926 -14.06270 -13.04671 -12.74162 -12.62985 -12.28703 -12.25003 -12.20774 -11.95348 -11.80179 -11.75053 -11.25346 -10.69948 -10.50938 -9.85417 -8.62018 -6.49320 0.52311 1.32551 1.55220 1.60412 1.80872 2.15348 2.55652 3.12196 3.37477 3.58508 3.85583 4.03043 4.08490 4.16271 4.34732 4.52349 4.69600 4.78335 4.91756 4.96752 5.04289 5.14401 5.27950 5.33626 5.37073 5.76648 6.08841 6.53535 7.03428 7.25703 7.43765 8.74329 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.030124 B = 0.011300 C = 0.009918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.259200 B = 2477.377835 C = 2822.404084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.013 4.013 3 C -0.140 4.140 4 C -0.028 4.028 5 O 0.091 5.909 6 N -0.391 5.391 7 C -0.007 4.007 8 C -0.214 4.214 9 C 0.288 3.712 10 H 0.041 0.959 11 O -0.586 6.586 12 C -0.641 4.641 13 H 0.043 0.957 14 C -0.008 4.008 15 N -0.915 5.915 16 Si 1.111 2.889 17 H -0.283 1.283 18 H -0.274 1.274 19 H -0.269 1.269 20 H 0.069 0.931 21 H 0.091 0.909 22 H 0.042 0.958 23 H 0.086 0.914 24 H 0.047 0.953 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.203 0.797 28 H 0.367 0.633 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.751 7.707 3.421 10.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.032 4.032 3 C -0.197 4.197 4 C -0.092 4.092 5 O 0.026 5.974 6 N -0.096 5.096 7 C -0.184 4.184 8 C -0.219 4.219 9 C 0.230 3.770 10 H 0.058 0.942 11 O -0.392 6.392 12 C -0.679 4.679 13 H 0.062 0.938 14 C -0.211 4.211 15 N -0.550 5.550 16 Si 0.933 3.067 17 H -0.209 1.209 18 H -0.199 1.199 19 H -0.194 1.194 20 H 0.088 0.912 21 H 0.109 0.891 22 H 0.061 0.939 23 H 0.104 0.896 24 H 0.066 0.934 25 H 0.110 0.890 26 H 0.088 0.912 27 H 0.220 0.780 28 H 0.214 0.786 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.951 7.211 3.158 9.868 hybrid contribution 0.675 0.239 1.006 1.235 sum -5.276 7.450 4.164 10.034 Atomic orbital electron populations 1.21803 0.91883 1.02059 1.03903 1.19869 0.97828 0.96506 0.89008 1.21847 1.00859 0.92937 1.04079 1.24550 1.00077 0.97276 0.87269 1.84630 1.55715 1.43463 1.13548 1.73731 1.12939 1.04878 1.18048 1.25022 1.01712 1.00330 0.91347 1.22347 1.03767 0.98694 0.97044 1.17648 0.83013 0.89311 0.87034 0.94169 1.86446 1.36514 1.59228 1.56963 1.22520 1.02126 1.23140 1.20099 0.93843 1.27176 1.00505 1.00149 0.93289 1.70791 1.06576 1.35776 1.41883 0.83017 0.73107 0.74233 0.76373 1.20869 1.19911 1.19364 0.91211 0.89055 0.93894 0.89618 0.93356 0.89016 0.91183 0.78014 0.78602 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.17 71.98 0.66 -2.99 15 2 C -0.01 -0.39 3.32 -11.54 -0.04 -0.43 15 3 C -0.14 -3.38 9.18 71.98 0.66 -2.72 15 4 C -0.03 -1.07 6.00 25.04 0.15 -0.92 15 5 O 0.09 3.37 11.20 71.61 0.80 4.17 15 6 N -0.39 -15.16 12.07 -59.27 -0.72 -15.88 15 7 C -0.01 -0.26 11.56 85.71 0.99 0.74 15 8 C -0.21 -9.24 5.35 -19.73 -0.11 -9.34 15 9 C 0.29 14.32 2.56 29.10 0.07 14.39 15 10 H 0.04 2.17 7.48 -2.39 -0.02 2.15 15 11 O -0.59 -29.01 11.86 -148.98 -1.77 -30.78 15 12 C -0.64 -34.40 8.74 25.60 0.22 -34.17 15 13 H 0.04 2.35 7.74 -2.91 -0.02 2.33 15 14 C -0.01 -0.45 5.40 84.65 0.46 0.01 15 15 N -0.91 -54.20 13.53 21.45 0.29 -53.91 15 16 Si 1.11 48.07 29.90 68.60 2.05 50.12 15 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 18 H -0.27 -11.17 7.11 99.48 0.71 -10.47 15 19 H -0.27 -10.76 7.11 99.48 0.71 -10.05 15 20 H 0.07 1.64 8.14 -2.39 -0.02 1.62 15 21 H 0.09 1.88 8.14 -2.38 -0.02 1.86 15 22 H 0.04 1.29 8.14 -2.38 -0.02 1.27 15 23 H 0.09 3.06 7.24 -2.39 -0.02 3.04 15 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 15 25 H 0.09 1.72 8.14 -2.39 -0.02 1.70 15 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 15 27 H 0.20 6.77 7.78 -2.91 -0.02 6.74 15 28 H 0.37 15.96 8.42 -74.06 -0.62 15.34 15 29 H 0.27 16.41 6.47 -92.70 -0.60 15.81 15 Total: -1.00 -63.67 255.12 4.44 -59.23 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.70 Total: 22.48 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 3.07 Total: -35.44 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -0.43 Total: -69.79 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.96 Total: -26.61 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.05 Total: 50.12 kcal Total: -63.67 4.44 -59.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261269070.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.340 kcal (2) G-P(sol) polarization free energy of solvation -63.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds