Wall clock time and date at job start Mon Mar 30 2020 03:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35758 * 117.00170 * 2 1 4 4 N 1.35136 * 126.18991 * 359.68942 * 3 2 1 5 5 H 0.96994 * 126.04128 * 359.97438 * 4 3 2 6 6 N 1.40075 * 107.92298 * 179.85167 * 4 3 2 7 7 C 1.30833 * 108.34348 * 0.41719 * 6 4 3 8 8 C 1.35939 * 126.19210 * 180.02562 * 3 2 1 9 9 C 1.50702 * 126.08489 * 359.97438 * 8 3 2 10 10 H 1.09003 * 109.46870 * 0.02562 * 9 8 3 11 11 C 1.50703 * 109.47001 * 120.00371 * 9 8 3 12 12 H 1.08001 * 119.99938 * 0.02562 * 11 9 8 13 13 C 1.37871 * 120.00217 * 180.02562 * 11 9 8 14 14 N 1.31519 * 120.00093 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 120.00266 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47001 * 89.99898 * 15 13 11 17 17 H 1.48492 * 109.47483 * 209.99886 * 15 13 11 18 18 H 1.48499 * 109.47175 * 330.00133 * 15 13 11 19 19 C 1.52994 * 109.47631 * 240.00365 * 9 8 3 20 20 N 1.46911 * 109.46918 * 65.00105 * 19 9 8 21 21 H 1.09001 * 109.47103 * 300.00522 * 1 2 3 22 22 H 1.09004 * 109.47054 * 60.00026 * 1 2 3 23 23 H 1.09000 * 109.47187 * 180.02562 * 1 2 3 24 24 H 1.07990 * 125.86408 * 179.74492 * 7 6 4 25 25 H 0.96995 * 120.00093 * 180.02562 * 14 13 11 26 26 H 1.09000 * 109.47408 * 185.00009 * 19 9 8 27 27 H 1.09000 * 109.47403 * 305.00884 * 19 9 8 28 28 H 1.00896 * 110.99815 * 56.04470 * 20 19 9 29 29 H 1.00890 * 110.99904 * 180.02562 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 7 1.4360 2.4157 -0.0059 5 1 0.4786 2.5713 -0.0113 6 7 2.4310 3.4015 -0.0001 7 6 3.5976 2.8091 0.0000 8 6 3.3874 1.4267 -0.0005 9 6 4.4581 0.3662 -0.0006 10 1 3.9930 -0.6196 -0.0007 11 6 5.3146 0.5173 -1.2314 12 1 5.1048 1.3029 -1.9421 13 6 6.3659 -0.3474 -1.4500 14 7 6.6211 -1.3045 -0.5847 15 14 7.4280 -0.1598 -2.9752 16 1 8.5630 0.7508 -2.6790 17 1 7.9522 -1.4888 -3.3800 18 1 6.6130 0.4080 -4.0791 19 6 5.3284 0.5199 1.2483 20 7 4.5187 0.2545 2.4450 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 4.5579 3.3029 -0.0001 25 1 7.3610 -1.9126 -0.7384 26 1 6.1552 -0.1890 1.2045 27 1 5.7222 1.5352 1.2941 28 1 4.0895 -0.6573 2.3963 29 1 5.0711 0.3501 3.2838 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261279155.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:33 Heat of formation + Delta-G solvation = 37.907552 kcal Electronic energy + Delta-G solvation = -14213.468422 eV Core-core repulsion = 11752.851764 eV Total energy + Delta-G solvation = -2460.616658 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.65553 -37.56571 -35.04746 -32.00005 -30.80143 -29.63869 -27.67348 -26.00274 -23.66712 -21.21925 -20.91731 -19.37030 -17.79539 -16.30977 -15.60968 -14.95772 -14.67192 -14.46196 -14.09992 -13.48154 -13.24436 -12.73969 -12.48349 -11.87136 -11.67860 -11.10299 -11.03297 -10.90545 -10.62496 -10.23913 -9.75573 -9.49301 -9.07550 -8.61659 -8.34375 -7.44142 -7.03669 -5.92649 -3.98658 2.68371 3.26458 3.34712 3.41384 3.45660 3.74417 3.82434 4.50221 5.07442 5.17553 5.34945 5.49042 5.56492 5.91689 6.30869 6.46559 6.83885 6.90871 7.06450 7.24091 7.56239 7.69310 8.01636 8.07351 8.20835 8.31217 8.43649 8.52697 8.63580 9.06427 9.65047 11.11088 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.031257 B = 0.010367 C = 0.010015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.570263 B = 2700.324047 C = 2795.217611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.285 6.285 3 C 0.242 3.758 4 N -0.521 5.521 5 H 0.422 0.578 6 N -0.315 5.315 7 C 0.085 3.915 8 C -0.170 4.170 9 C 0.123 3.877 10 H 0.033 0.967 11 C -0.500 4.500 12 H 0.057 0.943 13 C 0.060 3.940 14 N -0.894 5.894 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.275 1.275 19 C 0.066 3.934 20 N -0.856 5.856 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.102 0.898 24 H 0.180 0.820 25 H 0.259 0.741 26 H 0.064 0.936 27 H 0.041 0.959 28 H 0.328 0.672 29 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.568 2.350 2.448 9.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.192 6.192 3 C 0.075 3.925 4 N -0.242 5.242 5 H 0.264 0.736 6 N -0.142 5.142 7 C -0.100 4.100 8 C -0.181 4.181 9 C 0.103 3.897 10 H 0.051 0.949 11 C -0.539 4.539 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.534 5.534 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.200 1.200 19 C -0.064 4.064 20 N -0.382 5.382 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.121 0.879 24 H 0.196 0.804 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.139 0.861 29 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.352 3.606 2.215 10.265 hybrid contribution 0.870 -1.370 -0.670 1.756 sum -8.482 2.236 1.545 8.907 Atomic orbital electron populations 1.22959 0.79748 1.04333 1.00418 1.86361 1.19826 1.22697 1.90267 1.19371 0.91647 0.78201 1.03253 1.46375 1.08510 1.03512 1.65758 0.73567 1.77219 0.96256 1.11439 1.29313 1.23448 0.96140 0.92925 0.97502 1.19695 0.90181 0.95682 1.12588 1.17105 0.88907 0.91081 0.92593 0.94900 1.21203 1.12472 1.14364 1.05848 0.92441 1.24971 0.97486 0.95167 0.96464 1.69879 1.30151 1.17817 1.35521 0.86603 0.80658 0.77228 0.83582 1.20704 1.21411 1.19969 1.22007 0.96461 0.99351 0.88542 1.59003 1.38453 1.35903 1.04859 0.93310 0.93365 0.87928 0.80351 0.93138 0.91817 0.94092 0.86148 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.31 101.05 1.04 1.30 15 2 O -0.29 -5.37 10.32 -18.98 -0.20 -5.57 15 3 C 0.24 4.94 7.76 -16.92 -0.13 4.81 15 4 N -0.52 -9.28 7.12 30.36 0.22 -9.06 15 5 H 0.42 5.79 8.31 -182.62 -1.52 4.27 15 6 N -0.31 -6.28 12.69 30.61 0.39 -5.89 15 7 C 0.08 1.80 11.42 -17.38 -0.20 1.60 15 8 C -0.17 -3.90 4.49 -104.85 -0.47 -4.37 15 9 C 0.12 3.12 2.28 -92.92 -0.21 2.91 15 10 H 0.03 0.93 7.89 -51.93 -0.41 0.52 15 11 C -0.50 -13.67 8.42 -34.44 -0.29 -13.96 15 12 H 0.06 1.58 7.73 -52.49 -0.41 1.17 15 13 C 0.06 1.63 5.29 -17.82 -0.09 1.54 15 14 N -0.89 -25.15 11.30 55.43 0.63 -24.53 15 15 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 15 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 15 19 C 0.07 1.58 5.96 -3.82 -0.02 1.55 15 20 N -0.86 -17.55 9.34 -10.36 -0.10 -17.65 15 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 15 22 H 0.05 0.52 8.14 -51.93 -0.42 0.09 15 23 H 0.10 1.02 8.14 -51.93 -0.42 0.59 15 24 H 0.18 3.48 8.06 -52.49 -0.42 3.05 15 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 15 26 H 0.06 1.67 5.96 -51.93 -0.31 1.36 15 27 H 0.04 0.96 7.88 -51.93 -0.41 0.55 15 28 H 0.33 6.67 8.99 -39.29 -0.35 6.32 15 29 H 0.32 5.68 9.08 -39.30 -0.36 5.33 15 LS Contribution 254.18 15.07 3.83 3.83 Total: -1.00 -30.82 254.18 -5.22 -36.04 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -4.59 Total: 11.23 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -0.38 Total: -4.61 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 1.13 Total: -57.13 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.20 Total: -5.57 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.82 -5.22 -36.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279155.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.944 kcal (2) G-P(sol) polarization free energy of solvation -30.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds