Wall clock time and date at job start Mon Mar 30 2020 03:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35758 * 117.00170 * 2 1 4 4 N 1.35136 * 126.18991 * 359.68942 * 3 2 1 5 5 H 0.96994 * 126.04128 * 359.97438 * 4 3 2 6 6 N 1.40075 * 107.92298 * 179.85167 * 4 3 2 7 7 C 1.30833 * 108.34348 * 0.41719 * 6 4 3 8 8 C 1.35939 * 126.19210 * 180.02562 * 3 2 1 9 9 C 1.50702 * 126.08489 * 359.97438 * 8 3 2 10 10 H 1.09003 * 109.46870 * 0.02562 * 9 8 3 11 11 C 1.50703 * 109.47001 * 120.00371 * 9 8 3 12 12 H 1.08001 * 119.99938 * 0.02562 * 11 9 8 13 13 C 1.37871 * 120.00217 * 180.02562 * 11 9 8 14 14 N 1.31519 * 120.00093 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 120.00266 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47001 * 89.99898 * 15 13 11 17 17 H 1.48492 * 109.47483 * 209.99886 * 15 13 11 18 18 H 1.48499 * 109.47175 * 330.00133 * 15 13 11 19 19 C 1.52994 * 109.47631 * 240.00365 * 9 8 3 20 20 N 1.46911 * 109.46918 * 65.00105 * 19 9 8 21 21 H 1.09001 * 109.47103 * 300.00522 * 1 2 3 22 22 H 1.09004 * 109.47054 * 60.00026 * 1 2 3 23 23 H 1.09000 * 109.47187 * 180.02562 * 1 2 3 24 24 H 1.07990 * 125.86408 * 179.74492 * 7 6 4 25 25 H 0.96995 * 120.00093 * 180.02562 * 14 13 11 26 26 H 1.09000 * 109.47408 * 185.00009 * 19 9 8 27 27 H 1.09000 * 109.47403 * 305.00884 * 19 9 8 28 28 H 1.00896 * 110.99815 * 56.04470 * 20 19 9 29 29 H 1.00890 * 110.99904 * 180.02562 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 7 1.4360 2.4157 -0.0059 5 1 0.4786 2.5713 -0.0113 6 7 2.4310 3.4015 -0.0001 7 6 3.5976 2.8091 0.0000 8 6 3.3874 1.4267 -0.0005 9 6 4.4581 0.3662 -0.0006 10 1 3.9930 -0.6196 -0.0007 11 6 5.3146 0.5173 -1.2314 12 1 5.1048 1.3029 -1.9421 13 6 6.3659 -0.3474 -1.4500 14 7 6.6211 -1.3045 -0.5847 15 14 7.4280 -0.1598 -2.9752 16 1 8.5630 0.7508 -2.6790 17 1 7.9522 -1.4888 -3.3800 18 1 6.6130 0.4080 -4.0791 19 6 5.3284 0.5199 1.2483 20 7 4.5187 0.2545 2.4450 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 4.5579 3.3029 -0.0001 25 1 7.3610 -1.9126 -0.7384 26 1 6.1552 -0.1890 1.2045 27 1 5.7222 1.5352 1.2941 28 1 4.0895 -0.6573 2.3963 29 1 5.0711 0.3501 3.2838 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261279155.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:33 Heat of formation + Delta-G solvation = 12.659397 kcal Electronic energy + Delta-G solvation = -14214.563264 eV Core-core repulsion = 11752.851764 eV Total energy + Delta-G solvation = -2461.711500 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.20164 -38.96977 -36.92945 -33.98723 -32.44804 -31.21895 -29.18208 -27.46201 -25.64102 -22.94731 -22.51236 -20.95441 -19.38672 -18.29685 -16.95482 -16.65878 -16.33138 -16.17011 -15.62973 -15.10625 -14.77748 -14.32576 -14.25492 -13.79142 -13.04000 -12.87727 -12.78987 -12.46170 -12.24272 -12.00236 -11.68227 -11.33844 -11.04444 -10.41572 -10.13522 -9.21698 -8.69243 -7.98617 -6.13150 1.11803 1.46411 1.47451 1.57357 1.82798 2.14927 2.49920 2.52252 3.25030 3.93882 4.18510 4.20427 4.28322 4.59906 4.72832 4.88010 5.05149 5.16300 5.30827 5.59193 5.62195 5.89136 6.03838 6.12588 6.36904 6.66273 6.82526 6.85875 6.90350 7.04108 7.53741 9.02171 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.031257 B = 0.010367 C = 0.010015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.570263 B = 2700.324047 C = 2795.217611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.311 6.311 3 C 0.255 3.745 4 N -0.499 5.499 5 H 0.442 0.558 6 N -0.315 5.315 7 C 0.078 3.922 8 C -0.213 4.213 9 C 0.132 3.868 10 H -0.005 1.005 11 C -0.516 4.516 12 H 0.050 0.950 13 C 0.015 3.985 14 N -0.918 5.918 15 Si 0.952 3.048 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.081 3.919 20 N -0.846 5.846 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.126 0.874 24 H 0.187 0.813 25 H 0.259 0.741 26 H 0.036 0.964 27 H 0.039 0.961 28 H 0.330 0.670 29 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.644 2.941 2.276 10.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.218 6.218 3 C 0.086 3.914 4 N -0.223 5.223 5 H 0.288 0.712 6 N -0.143 5.143 7 C -0.107 4.107 8 C -0.224 4.224 9 C 0.112 3.888 10 H 0.013 0.987 11 C -0.555 4.555 12 H 0.068 0.932 13 C -0.183 4.183 14 N -0.558 5.558 15 Si 0.778 3.222 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.050 4.050 20 N -0.373 5.373 21 H 0.087 0.913 22 H 0.084 0.916 23 H 0.144 0.856 24 H 0.204 0.796 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.140 0.860 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.470 4.208 2.058 11.470 hybrid contribution 1.052 -1.601 -0.584 2.003 sum -9.418 2.607 1.474 9.883 Atomic orbital electron populations 1.23409 0.76258 1.06631 1.02270 1.86348 1.23505 1.22013 1.89913 1.19280 0.91460 0.79291 1.01324 1.46277 1.09329 1.02341 1.64336 0.71150 1.77170 0.96137 1.11741 1.29252 1.23535 0.96967 0.92378 0.97813 1.19535 0.90937 0.95849 1.16103 1.16823 0.89381 0.90062 0.92523 0.98682 1.21471 1.13096 1.14250 1.06696 0.93167 1.25675 0.98614 0.94909 0.99107 1.70007 1.30536 1.18336 1.36889 0.85653 0.79115 0.77224 0.80233 1.19843 1.21167 1.19827 1.21684 0.95583 0.98285 0.89430 1.58885 1.37999 1.35968 1.04498 0.91274 0.91574 0.85625 0.79633 0.93163 0.94641 0.94231 0.85969 0.85723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 10.31 113.37 1.17 1.36 15 2 O -0.31 -11.33 10.32 -90.84 -0.94 -12.26 15 3 C 0.25 10.11 7.76 83.65 0.65 10.75 15 4 N -0.50 -16.64 7.12 -169.18 -1.20 -17.85 15 5 H 0.44 10.73 8.31 -213.34 -1.77 8.95 15 6 N -0.32 -12.03 12.69 -57.06 -0.72 -12.76 15 7 C 0.08 3.24 11.42 85.23 0.97 4.22 15 8 C -0.21 -9.70 4.49 -20.01 -0.09 -9.79 15 9 C 0.13 6.83 2.28 -12.29 -0.03 6.80 15 10 H 0.00 -0.29 7.89 -2.39 -0.02 -0.31 15 11 C -0.52 -28.67 8.42 25.60 0.22 -28.45 15 12 H 0.05 2.79 7.73 -2.91 -0.02 2.77 15 13 C 0.02 0.83 5.29 84.65 0.45 1.28 15 14 N -0.92 -52.45 11.30 21.45 0.24 -52.20 15 15 Si 0.95 43.72 29.54 68.60 2.03 45.75 15 16 H -0.27 -12.12 7.11 99.48 0.71 -11.41 15 17 H -0.29 -12.94 7.11 99.48 0.71 -12.23 15 18 H -0.27 -12.40 7.11 99.48 0.71 -11.69 15 19 C 0.08 3.90 5.96 86.30 0.51 4.41 15 20 N -0.85 -34.47 9.34 -186.71 -1.74 -36.22 15 21 H 0.07 1.23 8.14 -2.39 -0.02 1.21 15 22 H 0.07 1.20 8.14 -2.38 -0.02 1.18 15 23 H 0.13 2.13 8.14 -2.39 -0.02 2.11 15 24 H 0.19 7.19 8.06 -2.92 -0.02 7.17 15 25 H 0.26 14.14 8.31 -92.71 -0.77 13.37 15 26 H 0.04 1.91 5.96 -2.39 -0.01 1.90 15 27 H 0.04 1.88 7.88 -2.39 -0.02 1.86 15 28 H 0.33 13.42 8.99 -89.70 -0.81 12.61 15 29 H 0.33 11.68 9.08 -89.70 -0.81 10.86 15 Total: -1.00 -65.92 254.18 -0.69 -66.61 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: -2.20 Total: 28.35 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: 3.85 Total: -9.42 kcal Atomic # 7 Polarization: -115.60 SS G_CDS: -3.43 Total: -119.03 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -0.94 Total: -12.26 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -65.92 -0.69 -66.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279155.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.265 kcal (2) G-P(sol) polarization free energy of solvation -65.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds