Wall clock time and date at job start Mon Mar 30 2020 02:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 110.70379 * 2 1 4 4 C 1.53005 * 117.49651 * 127.91850 * 3 2 1 5 5 C 1.53001 * 59.99977 * 252.51129 * 4 3 2 6 6 C 1.54597 * 110.79721 * 236.66857 * 2 1 3 7 7 C 1.51723 * 102.86618 * 266.88917 * 6 2 1 8 8 O 1.21293 * 126.23902 * 164.79182 * 7 6 2 9 9 N 1.34776 * 107.51556 * 344.79367 * 7 6 2 10 10 C 1.37095 * 124.16116 * 178.82068 * 9 7 6 11 11 H 1.08004 * 119.99861 * 353.91213 * 10 9 7 12 12 C 1.38944 * 120.00320 * 173.91490 * 10 9 7 13 13 N 1.31408 * 119.99710 * 6.00435 * 12 10 9 14 14 Si 1.86794 * 120.00432 * 186.01124 * 12 10 9 15 15 H 1.48505 * 109.47295 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47612 * 119.99777 * 14 12 10 17 17 H 1.48503 * 109.47118 * 239.99725 * 14 12 10 18 18 O 1.41454 * 111.67663 * 358.82120 * 9 7 6 19 19 H 1.09001 * 109.47300 * 182.62709 * 1 2 3 20 20 H 1.09005 * 109.47369 * 62.63116 * 1 2 3 21 21 H 1.09001 * 109.47491 * 302.63062 * 1 2 3 22 22 H 1.08998 * 115.54896 * 273.63011 * 3 2 1 23 23 H 1.08997 * 117.50227 * 359.97438 * 4 3 2 24 24 H 1.09003 * 117.49396 * 145.02465 * 4 3 2 25 25 H 1.09004 * 117.49898 * 252.51644 * 5 4 3 26 26 H 1.08999 * 117.52033 * 107.48038 * 5 4 3 27 27 H 1.09005 * 110.73199 * 25.23214 * 6 2 1 28 28 H 1.09000 * 110.73545 * 148.36308 * 6 2 1 29 29 H 0.97003 * 120.00463 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0709 1.4312 0.0000 4 6 3.1008 1.7971 1.0707 5 6 1.6724 2.3370 1.1670 6 6 2.0789 -0.7941 -1.2075 7 6 2.2738 -2.1860 -0.6360 8 8 2.4426 -3.2051 -1.2719 9 7 2.2254 -2.0836 0.7070 10 6 2.3403 -3.1468 1.5648 11 1 2.3806 -4.1532 1.1750 12 6 2.4049 -2.9296 2.9356 13 7 2.2377 -1.7186 3.4176 14 14 2.7297 -4.3590 4.0935 15 1 2.8806 -5.6093 3.3064 16 1 3.9758 -4.1024 4.8595 17 1 1.5904 -4.5019 5.0352 18 8 2.0413 -0.7440 1.1225 19 1 -0.3634 -1.0266 0.0471 20 1 -0.3634 0.4724 -0.9127 21 1 -0.3634 0.5541 0.8654 22 1 2.1788 1.8930 -0.9814 23 1 3.3927 1.0184 1.7753 24 1 3.8867 2.4998 0.7936 25 1 1.5187 3.3948 0.9532 26 1 1.0246 1.9134 1.9344 27 1 1.3537 -0.8092 -2.0213 28 1 3.0272 -0.3763 -1.5453 29 1 2.2831 -1.5669 4.3746 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261306283.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:59 Heat of formation + Delta-G solvation = 7.177501 kcal Electronic energy + Delta-G solvation = -14649.004243 eV Core-core repulsion = 12154.762279 eV Total energy + Delta-G solvation = -2494.241964 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.64910 -37.02183 -35.35008 -33.34262 -31.19295 -30.18329 -27.67945 -24.78287 -22.83699 -21.81518 -20.15421 -18.86115 -17.84694 -15.72988 -15.41426 -14.80663 -14.50114 -14.41344 -13.74936 -13.24429 -12.92948 -12.55862 -12.10239 -11.73040 -11.52121 -11.20382 -11.08198 -11.01357 -10.79802 -10.52474 -10.36981 -10.19581 -9.89430 -9.65730 -9.07943 -8.44800 -7.67636 -6.36575 -3.90226 3.11709 3.21689 3.27542 3.55972 3.76417 4.15825 4.20455 4.91401 4.99947 5.16801 5.33007 5.33835 5.52518 5.62194 5.74492 5.78538 6.01164 6.06567 6.13841 6.29116 6.42660 6.49351 6.67661 6.70877 6.82896 7.41394 7.89086 8.39013 8.96197 9.31421 9.85622 10.70321 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.031703 B = 0.012992 C = 0.010289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.984050 B = 2154.734286 C = 2720.723626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.094 3.906 3 C -0.144 4.144 4 C -0.166 4.166 5 C -0.173 4.173 6 C -0.163 4.163 7 C 0.426 3.574 8 O -0.579 6.579 9 N -0.294 5.294 10 C -0.318 4.318 11 H 0.124 0.876 12 C 0.041 3.959 13 N -0.839 5.839 14 Si 0.926 3.074 15 H -0.266 1.266 16 H -0.278 1.278 17 H -0.279 1.279 18 O -0.093 6.093 19 H 0.060 0.940 20 H 0.060 0.940 21 H 0.063 0.937 22 H 0.111 0.889 23 H 0.114 0.886 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.585 7.684 -2.466 8.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.053 3.947 3 C -0.163 4.163 4 C -0.203 4.203 5 C -0.210 4.210 6 C -0.204 4.204 7 C 0.214 3.786 8 O -0.466 6.466 9 N -0.056 5.056 10 C -0.443 4.443 11 H 0.142 0.858 12 C -0.167 4.167 13 N -0.474 5.474 14 Si 0.752 3.248 15 H -0.190 1.190 16 H -0.203 1.203 17 H -0.205 1.205 18 O -0.095 6.095 19 H 0.079 0.921 20 H 0.079 0.921 21 H 0.082 0.918 22 H 0.129 0.871 23 H 0.133 0.867 24 H 0.104 0.896 25 H 0.106 0.894 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.467 7.344 -2.259 7.822 hybrid contribution -0.012 -0.263 0.563 0.622 sum -1.479 7.081 -1.696 7.430 Atomic orbital electron populations 1.22042 0.94347 1.02595 1.01706 1.22032 0.93804 0.90868 0.88021 1.22179 1.05601 0.93574 0.94974 1.22958 0.91824 1.03357 1.02169 1.22902 0.99327 0.97981 1.00827 1.22866 1.02918 0.96191 0.98432 1.20166 0.86421 0.90129 0.81836 1.90566 1.58459 1.34470 1.63073 1.45905 1.59588 0.96039 1.04090 1.19882 1.51885 0.85238 0.87271 0.85829 1.25361 0.96188 0.97694 0.97481 1.70002 1.43829 1.19996 1.13607 0.85867 0.78161 0.80896 0.79889 1.18967 1.20340 1.20502 1.91502 1.85359 1.06221 1.26433 0.92087 0.92145 0.91790 0.87103 0.86738 0.89573 0.89449 0.88365 0.89030 0.88893 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.80 37.15 0.33 -2.31 15 2 C 0.09 1.83 1.11 -89.78 -0.10 1.73 15 3 C -0.14 -2.32 5.14 -90.61 -0.47 -2.78 15 4 C -0.17 -2.75 9.90 -26.73 -0.26 -3.01 15 5 C -0.17 -2.61 9.75 -26.73 -0.26 -2.87 15 6 C -0.16 -3.24 6.14 -26.54 -0.16 -3.41 15 7 C 0.43 11.05 8.15 -10.48 -0.09 10.97 15 8 O -0.58 -16.65 17.69 5.55 0.10 -16.55 15 9 N -0.29 -8.04 3.76 -10.63 -0.04 -8.08 15 10 C -0.32 -9.06 9.97 -14.94 -0.15 -9.20 15 11 H 0.12 3.53 7.73 -52.48 -0.41 3.13 15 12 C 0.04 1.09 5.50 -17.47 -0.10 1.00 15 13 N -0.84 -23.11 11.79 55.50 0.65 -22.45 15 14 Si 0.93 20.54 29.56 -169.99 -5.02 15.52 15 15 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 16 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 18 O -0.09 -2.32 8.07 -11.40 -0.09 -2.41 15 19 H 0.06 1.20 8.14 -51.93 -0.42 0.78 15 20 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 21 H 0.06 1.10 7.28 -51.93 -0.38 0.72 15 22 H 0.11 1.49 8.14 -51.93 -0.42 1.07 15 23 H 0.11 2.33 7.10 -51.93 -0.37 1.96 15 24 H 0.09 1.20 8.14 -51.93 -0.42 0.78 15 25 H 0.09 1.07 8.14 -51.93 -0.42 0.65 15 26 H 0.10 1.64 7.61 -51.93 -0.40 1.25 15 27 H 0.09 1.60 7.91 -51.93 -0.41 1.19 15 28 H 0.09 1.69 7.91 -51.93 -0.41 1.28 15 29 H 0.27 6.89 8.31 -40.82 -0.34 6.55 15 LS Contribution 251.21 15.07 3.79 3.79 Total: -1.00 -31.56 251.21 -5.49 -37.05 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -3.62 Total: 3.03 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -1.26 Total: -9.89 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: 0.61 Total: -30.53 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.01 Total: -18.96 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -31.56 -5.49 -37.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261306283.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.226 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds