Wall clock time and date at job start Mon Mar 30 2020 02:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 110.70379 * 2 1 4 4 C 1.53005 * 117.49651 * 127.91850 * 3 2 1 5 5 C 1.53001 * 59.99977 * 252.51129 * 4 3 2 6 6 C 1.54597 * 110.79721 * 236.66857 * 2 1 3 7 7 C 1.51723 * 102.86618 * 266.88917 * 6 2 1 8 8 O 1.21293 * 126.23902 * 164.79182 * 7 6 2 9 9 N 1.34776 * 107.51556 * 344.79367 * 7 6 2 10 10 C 1.37095 * 124.16116 * 178.82068 * 9 7 6 11 11 H 1.08004 * 119.99861 * 353.91213 * 10 9 7 12 12 C 1.38944 * 120.00320 * 173.91490 * 10 9 7 13 13 N 1.31408 * 119.99710 * 6.00435 * 12 10 9 14 14 Si 1.86794 * 120.00432 * 186.01124 * 12 10 9 15 15 H 1.48505 * 109.47295 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47612 * 119.99777 * 14 12 10 17 17 H 1.48503 * 109.47118 * 239.99725 * 14 12 10 18 18 O 1.41454 * 111.67663 * 358.82120 * 9 7 6 19 19 H 1.09001 * 109.47300 * 182.62709 * 1 2 3 20 20 H 1.09005 * 109.47369 * 62.63116 * 1 2 3 21 21 H 1.09001 * 109.47491 * 302.63062 * 1 2 3 22 22 H 1.08998 * 115.54896 * 273.63011 * 3 2 1 23 23 H 1.08997 * 117.50227 * 359.97438 * 4 3 2 24 24 H 1.09003 * 117.49396 * 145.02465 * 4 3 2 25 25 H 1.09004 * 117.49898 * 252.51644 * 5 4 3 26 26 H 1.08999 * 117.52033 * 107.48038 * 5 4 3 27 27 H 1.09005 * 110.73199 * 25.23214 * 6 2 1 28 28 H 1.09000 * 110.73545 * 148.36308 * 6 2 1 29 29 H 0.97003 * 120.00463 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0709 1.4312 0.0000 4 6 3.1008 1.7971 1.0707 5 6 1.6724 2.3370 1.1670 6 6 2.0789 -0.7941 -1.2075 7 6 2.2738 -2.1860 -0.6360 8 8 2.4426 -3.2051 -1.2719 9 7 2.2254 -2.0836 0.7070 10 6 2.3403 -3.1468 1.5648 11 1 2.3806 -4.1532 1.1750 12 6 2.4049 -2.9296 2.9356 13 7 2.2377 -1.7186 3.4176 14 14 2.7297 -4.3590 4.0935 15 1 2.8806 -5.6093 3.3064 16 1 3.9758 -4.1024 4.8595 17 1 1.5904 -4.5019 5.0352 18 8 2.0413 -0.7440 1.1225 19 1 -0.3634 -1.0266 0.0471 20 1 -0.3634 0.4724 -0.9127 21 1 -0.3634 0.5541 0.8654 22 1 2.1788 1.8930 -0.9814 23 1 3.3927 1.0184 1.7753 24 1 3.8867 2.4998 0.7936 25 1 1.5187 3.3948 0.9532 26 1 1.0246 1.9134 1.9344 27 1 1.3537 -0.8092 -2.0213 28 1 3.0272 -0.3763 -1.5453 29 1 2.2831 -1.5669 4.3746 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261306283.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:58 Heat of formation + Delta-G solvation = -13.375974 kcal Electronic energy + Delta-G solvation = -14649.895509 eV Core-core repulsion = 12154.762279 eV Total energy + Delta-G solvation = -2495.133229 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.41711 -38.70686 -37.15502 -35.26245 -32.94958 -32.12652 -29.34629 -26.69929 -24.33451 -23.05644 -21.98690 -20.56968 -19.76960 -17.44484 -17.24962 -16.48522 -16.30577 -16.12112 -15.53566 -14.81661 -14.61764 -14.35641 -13.67874 -13.55323 -13.21236 -12.81504 -12.79700 -12.70946 -12.31445 -12.18410 -12.04115 -11.84774 -11.22380 -11.16549 -10.85203 -10.41944 -9.69474 -8.42583 -6.06308 1.31725 1.37331 1.52763 1.72165 1.84284 2.33098 2.89789 3.07813 3.34456 3.49806 3.92919 3.94131 4.02562 4.21091 4.35859 4.44563 4.64665 4.79170 4.83551 4.88485 5.02809 5.09149 5.25770 5.26337 5.37158 5.45208 5.85177 6.36661 6.89959 7.29034 7.81665 8.64467 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.031703 B = 0.012992 C = 0.010289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.984050 B = 2154.734286 C = 2720.723626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.080 3.920 3 C -0.140 4.140 4 C -0.179 4.179 5 C -0.157 4.157 6 C -0.147 4.147 7 C 0.405 3.595 8 O -0.622 6.622 9 N -0.311 5.311 10 C -0.361 4.361 11 H 0.107 0.893 12 C 0.003 3.997 13 N -0.861 5.861 14 Si 0.999 3.001 15 H -0.265 1.265 16 H -0.268 1.268 17 H -0.267 1.267 18 O -0.113 6.113 19 H 0.029 0.971 20 H 0.102 0.898 21 H 0.064 0.936 22 H 0.153 0.847 23 H 0.066 0.934 24 H 0.116 0.884 25 H 0.127 0.873 26 H 0.074 0.926 27 H 0.122 0.878 28 H 0.115 0.885 29 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.816 9.540 -2.786 10.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.040 3.960 3 C -0.158 4.158 4 C -0.216 4.216 5 C -0.194 4.194 6 C -0.188 4.188 7 C 0.195 3.805 8 O -0.512 6.512 9 N -0.072 5.072 10 C -0.486 4.486 11 H 0.125 0.875 12 C -0.203 4.203 13 N -0.496 5.496 14 Si 0.820 3.180 15 H -0.189 1.189 16 H -0.193 1.193 17 H -0.192 1.192 18 O -0.116 6.116 19 H 0.049 0.951 20 H 0.121 0.879 21 H 0.083 0.917 22 H 0.170 0.830 23 H 0.084 0.916 24 H 0.135 0.865 25 H 0.145 0.855 26 H 0.092 0.908 27 H 0.140 0.860 28 H 0.133 0.867 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.709 9.231 -2.575 9.735 hybrid contribution 0.045 -0.784 0.660 1.026 sum -1.665 8.447 -1.915 8.820 Atomic orbital electron populations 1.22036 0.93071 1.01151 1.03933 1.22547 0.95027 0.92304 0.86098 1.22310 1.05010 0.91432 0.97063 1.22877 0.93643 1.03175 1.01942 1.22947 0.97309 0.99733 0.99377 1.22875 1.04961 0.91873 0.99049 1.21217 0.85427 0.92119 0.81718 1.90510 1.60076 1.36649 1.63932 1.46045 1.59388 0.97115 1.04650 1.19998 1.54436 0.85584 0.88581 0.87508 1.26273 0.94970 1.00658 0.98377 1.70104 1.43371 1.21832 1.14294 0.84816 0.78543 0.77238 0.77403 1.18894 1.19267 1.19192 1.91459 1.86075 1.04995 1.29073 0.95129 0.87927 0.91718 0.82996 0.91557 0.86539 0.85502 0.90767 0.85976 0.86720 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 8.80 71.98 0.63 -4.24 15 2 C 0.08 3.02 1.11 -10.25 -0.01 3.01 15 3 C -0.14 -4.01 5.14 -10.79 -0.06 -4.06 15 4 C -0.18 -5.59 9.90 30.60 0.30 -5.29 15 5 C -0.16 -4.24 9.75 30.60 0.30 -3.94 15 6 C -0.15 -5.60 6.14 30.72 0.19 -5.41 15 7 C 0.41 21.45 8.15 87.98 0.72 22.17 15 8 O -0.62 -36.94 17.69 -3.07 -0.05 -36.99 15 9 N -0.31 -17.58 3.76 -305.93 -1.15 -18.73 15 10 C -0.36 -21.44 9.97 84.04 0.84 -20.61 15 11 H 0.11 6.47 7.73 -2.91 -0.02 6.44 15 12 C 0.00 0.17 5.50 84.93 0.47 0.64 15 13 N -0.86 -48.35 11.79 21.66 0.26 -48.09 15 14 Si 1.00 42.69 29.56 68.60 2.03 44.72 15 15 H -0.26 -11.19 7.11 99.48 0.71 -10.48 15 16 H -0.27 -10.96 7.11 99.48 0.71 -10.25 15 17 H -0.27 -10.84 7.11 99.48 0.71 -10.13 15 18 O -0.11 -5.72 8.07 -38.46 -0.31 -6.03 15 19 H 0.03 1.19 8.14 -2.39 -0.02 1.17 15 20 H 0.10 2.56 8.14 -2.38 -0.02 2.54 15 21 H 0.06 2.14 7.28 -2.39 -0.02 2.12 15 22 H 0.15 3.19 8.14 -2.39 -0.02 3.17 15 23 H 0.07 2.75 7.10 -2.39 -0.02 2.73 15 24 H 0.12 2.88 8.14 -2.39 -0.02 2.86 15 25 H 0.13 2.47 8.14 -2.38 -0.02 2.45 15 26 H 0.07 2.38 7.61 -2.39 -0.02 2.36 15 27 H 0.12 3.88 7.91 -2.38 -0.02 3.86 15 28 H 0.11 3.86 7.91 -2.39 -0.02 3.84 15 29 H 0.27 14.21 8.31 -92.71 -0.77 13.44 15 Total: -1.00 -72.03 251.21 5.29 -66.74 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 1.14 Total: 16.12 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 3.38 Total: -17.74 kcal Atomic # 7 Polarization: -65.93 SS G_CDS: -0.90 Total: -66.82 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -0.36 Total: -43.02 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -72.03 5.29 -66.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261306283.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.366 kcal (2) G-P(sol) polarization free energy of solvation -72.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds