Wall clock time and date at job start Mon Mar 30 2020 02:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31463 * 1 3 3 Si 1.86803 * 120.00087 * 2 1 4 4 H 1.48502 * 109.47365 * 240.00523 * 3 2 1 5 5 H 1.48504 * 109.46762 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47145 * 119.99825 * 3 2 1 7 7 C 1.38889 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99260 * 160.68716 * 7 2 1 9 9 N 1.37191 * 119.99735 * 340.41583 * 7 2 1 10 10 C 1.33474 * 117.81637 * 148.78661 * 9 7 2 11 11 O 1.21515 * 118.79905 * 359.38724 * 10 9 7 12 12 O 1.34746 * 122.30785 * 180.29302 * 10 9 7 13 13 C 1.45323 * 116.62003 * 20.51595 * 12 10 9 14 14 C 1.52492 * 109.23322 * 310.83683 * 13 12 10 15 15 H 1.08997 * 110.75443 * 180.63245 * 14 13 12 16 16 C 1.54433 * 110.49836 * 303.85097 * 14 13 12 17 17 C 1.54323 * 104.19572 * 155.12100 * 16 14 13 18 18 C 1.53855 * 106.61594 * 336.95726 * 17 16 14 19 19 C 1.45690 * 117.81427 * 329.04332 * 9 7 2 20 20 H 1.08995 * 110.74015 * 66.55001 * 19 9 7 21 21 H 0.97005 * 119.99910 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.50901 * 190.90556 * 13 12 10 23 23 H 1.09003 * 109.54407 * 70.78853 * 13 12 10 24 24 H 1.09001 * 110.48794 * 273.80186 * 16 14 13 25 25 H 1.08997 * 110.48231 * 36.31302 * 16 14 13 26 26 H 1.08996 * 110.02255 * 96.24954 * 17 16 14 27 27 H 1.09001 * 110.02522 * 217.66913 * 17 16 14 28 28 H 1.09002 * 110.02109 * 240.86330 * 18 17 16 29 29 H 1.09003 * 110.02334 * 119.46607 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 3.1023 1.6965 -1.2126 5 1 1.2836 2.7465 0.0006 6 1 3.1024 1.6964 1.2125 7 6 2.0091 -1.2028 -0.0005 8 1 3.0434 -1.2289 -0.3099 9 7 1.3826 -2.3567 0.3972 10 6 1.7696 -3.5022 -0.1681 11 8 2.6442 -3.4728 -1.0111 12 8 1.2122 -4.6869 0.1505 13 6 -0.1028 -4.6429 0.7675 14 6 -0.0852 -3.6408 1.9168 15 1 -1.0585 -3.5961 2.4053 16 6 1.0225 -4.0005 2.9310 17 6 1.3548 -2.6601 3.6198 18 6 0.9210 -1.5475 2.6497 19 6 0.3353 -2.2492 1.4043 20 1 -0.5239 -1.7058 1.0112 21 1 -0.4850 0.8401 0.0004 22 1 -0.3587 -5.6310 1.1499 23 1 -0.8425 -4.3359 0.0280 24 1 0.6532 -4.7224 3.6593 25 1 1.8985 -4.3941 2.4154 26 1 0.8034 -2.5749 4.5561 27 1 2.4261 -2.5933 3.8094 28 1 1.7824 -0.9425 2.3665 29 1 0.1614 -0.9204 3.1165 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261307906.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:47 Heat of formation + Delta-G solvation = -74.215152 kcal Electronic energy + Delta-G solvation = -15100.548481 eV Core-core repulsion = 12602.777067 eV Total energy + Delta-G solvation = -2497.771414 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.26592 -36.88801 -36.00441 -33.68657 -31.31108 -29.82012 -27.31933 -25.55788 -23.95084 -21.34246 -19.86639 -18.57618 -17.43951 -16.58807 -15.72194 -15.09345 -14.63334 -14.55169 -13.91104 -13.39318 -13.17325 -12.71262 -12.29219 -11.56148 -11.27276 -11.06317 -10.98388 -10.66075 -10.49769 -10.30506 -10.20702 -10.07276 -9.90694 -9.53995 -9.02813 -8.83766 -7.59109 -6.27539 -3.97159 3.19653 3.24972 3.28354 3.76955 4.17004 4.35084 4.79989 4.93157 5.05968 5.27183 5.36165 5.65410 5.68412 5.80649 5.89715 6.12388 6.18441 6.30137 6.38090 6.42875 6.62259 6.79438 7.06688 7.26490 7.39105 7.61906 8.35420 8.65204 9.14116 9.51656 9.93581 10.71486 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.034546 B = 0.014994 C = 0.012456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.326517 B = 1867.001396 C = 2247.438621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.038 3.962 3 Si 0.920 3.080 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.304 4.304 8 H 0.096 0.904 9 N -0.446 5.446 10 C 0.600 3.400 11 O -0.569 6.569 12 O -0.365 6.365 13 C 0.073 3.927 14 C -0.148 4.148 15 H 0.096 0.904 16 C -0.117 4.117 17 C -0.122 4.122 18 C -0.121 4.121 19 C 0.143 3.857 20 H 0.122 0.878 21 H 0.267 0.733 22 H 0.095 0.905 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.522 -3.087 7.645 8.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.165 4.165 3 Si 0.747 3.253 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.432 4.432 8 H 0.114 0.886 9 N -0.177 5.177 10 C 0.354 3.646 11 O -0.459 6.459 12 O -0.279 6.279 13 C -0.002 4.002 14 C -0.167 4.167 15 H 0.114 0.886 16 C -0.154 4.154 17 C -0.159 4.159 18 C -0.160 4.160 19 C 0.039 3.961 20 H 0.139 0.861 21 H 0.078 0.922 22 H 0.114 0.886 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.198 -3.207 7.221 8.524 hybrid contribution 0.067 0.948 0.194 0.970 sum -3.132 -2.259 7.414 8.360 Atomic orbital electron populations 1.69842 1.05991 1.27461 1.48160 1.25269 0.95224 0.99574 0.96479 0.86091 0.79192 0.80841 0.79225 1.19704 1.20961 1.19884 1.19337 0.96290 0.83087 1.44437 0.88637 1.42798 1.34992 1.05032 1.34914 1.17997 0.85001 0.79400 0.82157 1.90800 1.35714 1.84461 1.34916 1.86685 1.33021 1.31483 1.76668 1.22819 0.83050 1.00035 0.94321 1.22789 1.00420 0.96951 0.96539 0.88606 1.22294 0.98521 0.97372 0.97245 1.22138 1.00603 0.95063 0.98123 1.22402 1.01790 0.97351 0.94410 1.21887 0.93602 0.92510 0.88087 0.86086 0.92232 0.88641 0.91684 0.92170 0.91265 0.92734 0.92427 0.89615 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.76 10.95 55.49 0.61 -22.15 15 2 C 0.04 0.99 4.21 -17.47 -0.07 0.91 15 3 Si 0.92 20.39 29.59 -169.99 -5.03 15.36 15 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 15 7 C -0.30 -8.40 7.57 -14.91 -0.11 -8.51 15 8 H 0.10 2.79 7.44 -52.49 -0.39 2.40 15 9 N -0.45 -11.50 2.71 -112.54 -0.31 -11.81 15 10 C 0.60 16.20 7.83 53.48 0.42 16.62 15 11 O -0.57 -17.46 16.62 -19.35 -0.32 -17.79 15 12 O -0.37 -8.42 9.67 -40.69 -0.39 -8.81 15 13 C 0.07 1.29 6.65 36.90 0.25 1.53 15 14 C -0.15 -2.55 3.28 -89.53 -0.29 -2.84 15 15 H 0.10 1.37 8.14 -51.93 -0.42 0.95 15 16 C -0.12 -1.92 6.06 -25.29 -0.15 -2.07 15 17 C -0.12 -2.02 6.81 -25.59 -0.17 -2.19 15 18 C -0.12 -2.40 5.95 -25.51 -0.15 -2.55 15 19 C 0.14 3.10 2.62 -66.99 -0.18 2.93 15 20 H 0.12 2.88 5.98 -51.93 -0.31 2.56 15 21 H 0.27 6.59 8.31 -40.82 -0.34 6.25 15 22 H 0.10 1.31 8.14 -51.93 -0.42 0.89 15 23 H 0.06 1.13 8.14 -51.93 -0.42 0.70 15 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 25 H 0.07 1.31 6.91 -51.93 -0.36 0.95 15 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 15 28 H 0.09 1.92 6.31 -51.93 -0.33 1.59 15 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 LS Contribution 233.80 15.07 3.52 3.52 Total: -1.00 -30.79 233.80 -5.87 -36.66 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -3.48 Total: 1.18 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -0.47 Total: 3.82 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.30 Total: -33.96 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.72 Total: -26.60 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.36 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -30.79 -5.87 -36.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261307906.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.550 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds