Wall clock time and date at job start Mon Mar 30 2020 02:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31463 * 1 3 3 Si 1.86803 * 120.00087 * 2 1 4 4 H 1.48502 * 109.47365 * 240.00523 * 3 2 1 5 5 H 1.48504 * 109.46762 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47145 * 119.99825 * 3 2 1 7 7 C 1.38889 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99260 * 160.68716 * 7 2 1 9 9 N 1.37191 * 119.99735 * 340.41583 * 7 2 1 10 10 C 1.33474 * 117.81637 * 148.78661 * 9 7 2 11 11 O 1.21515 * 118.79905 * 359.38724 * 10 9 7 12 12 O 1.34746 * 122.30785 * 180.29302 * 10 9 7 13 13 C 1.45323 * 116.62003 * 20.51595 * 12 10 9 14 14 C 1.52492 * 109.23322 * 310.83683 * 13 12 10 15 15 H 1.08997 * 110.75443 * 180.63245 * 14 13 12 16 16 C 1.54433 * 110.49836 * 303.85097 * 14 13 12 17 17 C 1.54323 * 104.19572 * 155.12100 * 16 14 13 18 18 C 1.53855 * 106.61594 * 336.95726 * 17 16 14 19 19 C 1.45690 * 117.81427 * 329.04332 * 9 7 2 20 20 H 1.08995 * 110.74015 * 66.55001 * 19 9 7 21 21 H 0.97005 * 119.99910 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.50901 * 190.90556 * 13 12 10 23 23 H 1.09003 * 109.54407 * 70.78853 * 13 12 10 24 24 H 1.09001 * 110.48794 * 273.80186 * 16 14 13 25 25 H 1.08997 * 110.48231 * 36.31302 * 16 14 13 26 26 H 1.08996 * 110.02255 * 96.24954 * 17 16 14 27 27 H 1.09001 * 110.02522 * 217.66913 * 17 16 14 28 28 H 1.09002 * 110.02109 * 240.86330 * 18 17 16 29 29 H 1.09003 * 110.02334 * 119.46607 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 3.1023 1.6965 -1.2126 5 1 1.2836 2.7465 0.0006 6 1 3.1024 1.6964 1.2125 7 6 2.0091 -1.2028 -0.0005 8 1 3.0434 -1.2289 -0.3099 9 7 1.3826 -2.3567 0.3972 10 6 1.7696 -3.5022 -0.1681 11 8 2.6442 -3.4728 -1.0111 12 8 1.2122 -4.6869 0.1505 13 6 -0.1028 -4.6429 0.7675 14 6 -0.0852 -3.6408 1.9168 15 1 -1.0585 -3.5961 2.4053 16 6 1.0225 -4.0005 2.9310 17 6 1.3548 -2.6601 3.6198 18 6 0.9210 -1.5475 2.6497 19 6 0.3353 -2.2492 1.4043 20 1 -0.5239 -1.7058 1.0112 21 1 -0.4850 0.8401 0.0004 22 1 -0.3587 -5.6310 1.1499 23 1 -0.8425 -4.3359 0.0280 24 1 0.6532 -4.7224 3.6593 25 1 1.8985 -4.3941 2.4154 26 1 0.8034 -2.5749 4.5561 27 1 2.4261 -2.5933 3.8094 28 1 1.7824 -0.9425 2.3665 29 1 0.1614 -0.9204 3.1165 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261307906.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:47 Heat of formation + Delta-G solvation = -94.599940 kcal Electronic energy + Delta-G solvation = -15101.432432 eV Core-core repulsion = 12602.777067 eV Total energy + Delta-G solvation = -2498.655365 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.03359 -38.68097 -37.86275 -35.57827 -33.32023 -31.30054 -28.88697 -27.46693 -25.58086 -23.16216 -21.40271 -20.26921 -19.26159 -18.38652 -17.56425 -16.95931 -16.43812 -16.16762 -15.57085 -15.02593 -14.97135 -14.35685 -13.83118 -13.45481 -13.07856 -12.82747 -12.56051 -12.28068 -12.01180 -11.96938 -11.95349 -11.72428 -11.38061 -11.19332 -10.96582 -10.80632 -9.60160 -8.28186 -6.07483 1.38877 1.41739 1.50916 1.91006 2.24185 2.49628 3.00128 3.19209 3.54096 3.70384 3.99046 4.31298 4.37994 4.40920 4.57454 4.70417 4.80857 4.87855 4.92366 5.11411 5.18358 5.33419 5.45369 5.50785 5.62061 5.71910 6.28166 6.64039 7.07995 7.53539 7.90976 8.67950 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.034546 B = 0.014994 C = 0.012456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.326517 B = 1867.001396 C = 2247.438621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.017 3.983 3 Si 0.978 3.022 4 H -0.279 1.279 5 H -0.267 1.267 6 H -0.264 1.264 7 C -0.342 4.342 8 H 0.064 0.936 9 N -0.442 5.442 10 C 0.587 3.413 11 O -0.627 6.627 12 O -0.372 6.372 13 C 0.062 3.938 14 C -0.139 4.139 15 H 0.139 0.861 16 C -0.112 4.112 17 C -0.116 4.116 18 C -0.119 4.119 19 C 0.129 3.871 20 H 0.100 0.900 21 H 0.275 0.725 22 H 0.146 0.854 23 H 0.064 0.936 24 H 0.104 0.896 25 H 0.036 0.964 26 H 0.092 0.908 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.211 -3.122 9.797 11.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.186 4.186 3 Si 0.801 3.199 4 H -0.205 1.205 5 H -0.192 1.192 6 H -0.189 1.189 7 C -0.470 4.470 8 H 0.082 0.918 9 N -0.173 5.173 10 C 0.342 3.658 11 O -0.521 6.521 12 O -0.285 6.285 13 C -0.012 4.012 14 C -0.157 4.157 15 H 0.157 0.843 16 C -0.149 4.149 17 C -0.153 4.153 18 C -0.158 4.158 19 C 0.026 3.974 20 H 0.118 0.882 21 H 0.085 0.915 22 H 0.164 0.836 23 H 0.083 0.917 24 H 0.122 0.878 25 H 0.055 0.945 26 H 0.110 0.890 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.942 -3.253 9.413 11.118 hybrid contribution 0.489 0.975 -0.474 1.189 sum -4.453 -2.278 8.940 10.244 Atomic orbital electron populations 1.69918 1.06720 1.28644 1.46816 1.25913 0.96024 1.01720 0.94991 0.85235 0.78324 0.77247 0.79058 1.20507 1.19151 1.18914 1.19230 0.95675 0.84812 1.47263 0.91804 1.42988 1.35066 1.04145 1.35089 1.18194 0.85045 0.80565 0.81972 1.90724 1.38187 1.85764 1.37448 1.86627 1.35521 1.29262 1.77114 1.23353 0.80302 1.03124 0.94406 1.22867 1.02710 0.93619 0.96527 0.84285 1.22281 0.97053 0.98049 0.97558 1.22119 1.00715 0.93760 0.98726 1.22343 1.00675 0.98232 0.94519 1.22099 0.91687 0.95929 0.87724 0.88213 0.91499 0.83604 0.91722 0.87800 0.94489 0.88991 0.93200 0.93041 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.67 10.95 21.66 0.24 -45.43 15 2 C 0.02 0.88 4.21 84.90 0.36 1.24 15 3 Si 0.98 41.88 29.59 68.60 2.03 43.91 15 4 H -0.28 -12.30 7.11 99.48 0.71 -11.60 15 5 H -0.27 -10.66 7.11 99.48 0.71 -9.96 15 6 H -0.26 -10.91 7.11 99.48 0.71 -10.21 15 7 C -0.34 -19.67 7.57 84.01 0.64 -19.03 15 8 H 0.06 3.99 7.44 -2.91 -0.02 3.97 15 9 N -0.44 -23.45 2.71 -741.73 -2.01 -25.47 15 10 C 0.59 32.86 7.83 129.99 1.02 33.88 15 11 O -0.63 -40.67 16.62 19.86 0.33 -40.34 15 12 O -0.37 -17.19 9.67 -56.49 -0.55 -17.73 15 13 C 0.06 2.02 6.65 71.81 0.48 2.49 15 14 C -0.14 -4.33 3.28 -10.09 -0.03 -4.36 15 15 H 0.14 3.22 8.14 -2.39 -0.02 3.20 15 16 C -0.11 -3.30 6.06 31.53 0.19 -3.11 15 17 C -0.12 -3.50 6.81 31.33 0.21 -3.29 15 18 C -0.12 -4.58 5.95 31.39 0.19 -4.39 15 19 C 0.13 5.47 2.62 46.03 0.12 5.59 15 20 H 0.10 4.68 5.98 -2.39 -0.01 4.66 15 21 H 0.28 13.25 8.31 -92.70 -0.77 12.48 15 22 H 0.15 3.31 8.14 -2.39 -0.02 3.29 15 23 H 0.06 2.11 8.14 -2.39 -0.02 2.09 15 24 H 0.10 2.20 8.14 -2.39 -0.02 2.18 15 25 H 0.04 1.33 6.91 -2.39 -0.02 1.32 15 26 H 0.09 2.13 8.14 -2.39 -0.02 2.11 15 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 15 28 H 0.05 2.32 6.31 -2.39 -0.02 2.30 15 29 H 0.07 2.46 8.14 -2.39 -0.02 2.44 15 Total: -1.00 -70.54 233.80 4.35 -66.19 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 1.15 Total: 9.84 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 3.17 Total: 9.03 kcal Atomic # 7 Polarization: -69.12 SS G_CDS: -1.77 Total: -70.90 kcal Atomic # 8 Polarization: -57.85 SS G_CDS: -0.22 Total: -58.07 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -70.54 4.35 -66.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261307906.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.411 kcal (2) G-P(sol) polarization free energy of solvation -70.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds