Wall clock time and date at job start Mon Mar 30 2020 02:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.34139 * 118.70402 * 269.73754 * 3 2 1 5 5 O 1.21229 * 119.36387 * 0.54334 * 4 3 2 6 6 C 1.50589 * 121.27839 * 180.28442 * 4 3 2 7 7 C 1.53240 * 109.27025 * 331.38652 * 6 4 3 8 8 C 1.53243 * 108.56702 * 55.40613 * 7 6 4 9 9 H 1.08995 * 109.52397 * 64.29009 * 8 7 6 10 10 C 1.50700 * 109.51706 * 184.48042 * 8 7 6 11 11 H 1.08000 * 120.00658 * 359.68165 * 10 8 7 12 12 C 1.37883 * 119.99718 * 179.68314 * 10 8 7 13 13 N 1.31514 * 119.99991 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00197 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47075 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46919 * 119.99991 * 14 12 10 17 17 H 1.48500 * 109.47084 * 239.99976 * 14 12 10 18 18 C 1.34141 * 118.70365 * 89.99806 * 3 2 1 19 19 O 1.21226 * 119.36328 * 359.45680 * 18 3 2 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99854 * 1 2 3 22 22 H 1.08996 * 109.46952 * 59.99873 * 1 2 3 23 23 H 1.09001 * 109.47289 * 239.99872 * 2 1 3 24 24 H 1.09004 * 109.47261 * 120.00128 * 2 1 3 25 25 H 1.09002 * 109.63645 * 211.34261 * 6 4 3 26 26 H 1.08997 * 109.29367 * 91.22373 * 6 4 3 27 27 H 1.08996 * 109.62103 * 295.67915 * 7 6 4 28 28 H 1.09007 * 109.61884 * 175.12844 * 7 6 4 29 29 H 0.96999 * 120.00106 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2382 1.9869 -1.1765 5 8 2.0195 1.3841 -2.2054 6 6 2.7460 3.4029 -1.2442 7 6 2.2811 4.1669 0.0002 8 6 2.7466 3.4027 1.2442 9 1 3.8359 3.3933 1.2796 10 6 2.2070 4.0758 2.4799 11 1 1.5978 4.9629 2.3892 12 6 2.4912 3.5591 3.7262 13 7 3.2327 2.4785 3.8366 14 14 1.8231 4.3938 5.2580 15 1 1.0231 5.5817 4.8653 16 1 0.9614 3.4420 6.0043 17 1 2.9530 4.8207 6.1218 18 6 2.2331 1.9887 1.1766 19 8 2.0099 1.3875 2.2054 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.3554 3.8899 -2.1377 26 1 3.8354 3.3936 -1.2800 27 1 1.1935 4.2388 0.0004 28 1 2.7166 5.1662 0.0002 29 1 3.4330 2.1152 4.7134 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261316394.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:39 Heat of formation + Delta-G solvation = -68.374437 kcal Electronic energy + Delta-G solvation = -14653.562077 eV Core-core repulsion = 12156.043935 eV Total energy + Delta-G solvation = -2497.518142 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.61799 -37.67139 -34.80338 -34.30170 -32.25983 -30.05544 -28.27116 -24.24609 -23.65373 -22.10064 -21.19477 -17.33994 -17.04590 -16.22338 -15.83403 -15.34136 -14.50720 -13.77332 -13.53706 -13.34601 -13.22902 -12.87751 -12.22963 -11.89631 -11.79634 -11.60051 -11.39462 -10.91224 -10.66157 -10.56727 -10.49108 -9.61354 -9.42784 -9.30865 -8.73586 -8.58776 -8.32407 -6.04359 -4.12219 2.56810 3.28293 3.37396 3.39577 3.50799 4.06895 4.42485 4.92739 5.32507 5.45714 5.52540 5.57561 5.70125 5.74952 5.82662 6.07007 6.19414 6.32414 6.36324 6.44796 6.49296 6.61008 6.91679 7.28410 7.82908 7.91154 8.17374 8.40753 8.82820 9.29641 9.53389 11.02038 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.040799 B = 0.011706 C = 0.009998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.120584 B = 2391.321973 C = 2800.027460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.089 3.911 3 N -0.574 5.574 4 C 0.526 3.474 5 O -0.544 6.544 6 C -0.143 4.143 7 C -0.113 4.113 8 C 0.039 3.961 9 H 0.065 0.935 10 C -0.541 4.541 11 H 0.066 0.934 12 C 0.079 3.921 13 N -0.838 5.838 14 Si 0.895 3.105 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.496 3.504 19 O -0.440 6.440 20 H 0.061 0.939 21 H 0.060 0.940 22 H 0.053 0.947 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.274 0.102 -6.465 6.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.033 4.033 3 N -0.319 5.319 4 C 0.317 3.683 5 O -0.421 6.421 6 C -0.182 4.182 7 C -0.151 4.151 8 C 0.018 3.982 9 H 0.082 0.918 10 C -0.579 4.579 11 H 0.084 0.916 12 C -0.129 4.129 13 N -0.471 5.471 14 Si 0.723 3.277 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C 0.286 3.714 19 O -0.304 6.304 20 H 0.080 0.920 21 H 0.079 0.921 22 H 0.072 0.928 23 H 0.098 0.902 24 H 0.105 0.895 25 H 0.114 0.886 26 H 0.117 0.883 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.411 -0.671 -6.208 6.402 hybrid contribution -0.336 0.196 0.868 0.952 sum -1.748 -0.475 -5.340 5.638 Atomic orbital electron populations 1.21984 0.95668 1.01770 1.02231 1.21474 0.94951 0.83604 1.03275 1.47490 1.60430 1.15117 1.08881 1.20938 0.75357 0.89373 0.82679 1.90618 1.50727 1.66890 1.33905 1.21945 1.03025 0.91518 1.01731 1.21800 1.01249 0.99633 0.92437 1.19022 0.98427 0.86430 0.94338 0.91760 1.20682 1.35593 1.12646 0.88951 0.91618 1.24957 0.94524 0.94220 0.99207 1.70058 1.34365 1.19028 1.23680 0.86496 0.78823 0.79408 0.82989 1.19673 1.20998 1.20968 1.23061 0.76626 0.90752 0.80978 1.90669 1.42981 1.64853 1.31911 0.91963 0.92074 0.92764 0.90201 0.89471 0.88581 0.88255 0.91878 0.90389 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 10.23 37.16 0.38 -2.28 15 2 C 0.09 1.66 5.67 -4.04 -0.02 1.63 15 3 N -0.57 -11.84 2.53 -115.78 -0.29 -12.13 15 4 C 0.53 10.04 7.48 -11.32 -0.08 9.96 15 5 O -0.54 -11.16 16.44 5.60 0.09 -11.07 15 6 C -0.14 -2.25 6.07 -27.81 -0.17 -2.42 15 7 C -0.11 -2.03 5.31 -26.48 -0.14 -2.17 15 8 C 0.04 0.90 2.36 -92.85 -0.22 0.68 15 9 H 0.06 1.55 8.14 -51.93 -0.42 1.13 15 10 C -0.54 -14.13 8.47 -34.44 -0.29 -14.42 15 11 H 0.07 1.67 7.74 -52.49 -0.41 1.26 15 12 C 0.08 2.16 4.84 -17.82 -0.09 2.07 15 13 N -0.84 -23.98 10.61 55.43 0.59 -23.39 15 14 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 15 15 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 18 C 0.50 11.86 7.07 -11.32 -0.08 11.78 15 19 O -0.44 -12.07 12.53 5.60 0.07 -12.00 15 20 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 21 H 0.06 1.13 8.14 -51.93 -0.42 0.70 15 22 H 0.05 0.91 8.14 -51.93 -0.42 0.48 15 23 H 0.08 1.39 7.29 -51.93 -0.38 1.02 15 24 H 0.09 1.68 7.29 -51.93 -0.38 1.30 15 25 H 0.10 1.29 8.14 -51.93 -0.42 0.87 15 26 H 0.10 1.41 8.14 -51.93 -0.42 0.98 15 27 H 0.06 1.15 8.14 -51.93 -0.42 0.72 15 28 H 0.08 1.25 8.14 -51.93 -0.42 0.83 15 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 LS Contribution 246.24 15.07 3.71 3.71 Total: -1.00 -30.60 246.24 -5.25 -35.84 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -3.68 Total: -1.79 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -0.71 Total: 4.83 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.30 Total: -35.52 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: 0.16 Total: -23.07 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.60 -5.25 -35.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261316394.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.531 kcal (2) G-P(sol) polarization free energy of solvation -30.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds