Wall clock time and date at job start Mon Mar 30 2020 02:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.34139 * 118.70402 * 269.73754 * 3 2 1 5 5 O 1.21229 * 119.36387 * 0.54334 * 4 3 2 6 6 C 1.50589 * 121.27839 * 180.28442 * 4 3 2 7 7 C 1.53240 * 109.27025 * 331.38652 * 6 4 3 8 8 C 1.53243 * 108.56702 * 55.40613 * 7 6 4 9 9 H 1.08995 * 109.52397 * 64.29009 * 8 7 6 10 10 C 1.50700 * 109.51706 * 184.48042 * 8 7 6 11 11 H 1.08000 * 120.00658 * 359.68165 * 10 8 7 12 12 C 1.37883 * 119.99718 * 179.68314 * 10 8 7 13 13 N 1.31514 * 119.99991 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00197 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47075 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46919 * 119.99991 * 14 12 10 17 17 H 1.48500 * 109.47084 * 239.99976 * 14 12 10 18 18 C 1.34141 * 118.70365 * 89.99806 * 3 2 1 19 19 O 1.21226 * 119.36328 * 359.45680 * 18 3 2 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99854 * 1 2 3 22 22 H 1.08996 * 109.46952 * 59.99873 * 1 2 3 23 23 H 1.09001 * 109.47289 * 239.99872 * 2 1 3 24 24 H 1.09004 * 109.47261 * 120.00128 * 2 1 3 25 25 H 1.09002 * 109.63645 * 211.34261 * 6 4 3 26 26 H 1.08997 * 109.29367 * 91.22373 * 6 4 3 27 27 H 1.08996 * 109.62103 * 295.67915 * 7 6 4 28 28 H 1.09007 * 109.61884 * 175.12844 * 7 6 4 29 29 H 0.96999 * 120.00106 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2382 1.9869 -1.1765 5 8 2.0195 1.3841 -2.2054 6 6 2.7460 3.4029 -1.2442 7 6 2.2811 4.1669 0.0002 8 6 2.7466 3.4027 1.2442 9 1 3.8359 3.3933 1.2796 10 6 2.2070 4.0758 2.4799 11 1 1.5978 4.9629 2.3892 12 6 2.4912 3.5591 3.7262 13 7 3.2327 2.4785 3.8366 14 14 1.8231 4.3938 5.2580 15 1 1.0231 5.5817 4.8653 16 1 0.9614 3.4420 6.0043 17 1 2.9530 4.8207 6.1218 18 6 2.2331 1.9887 1.1766 19 8 2.0099 1.3875 2.2054 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.3554 3.8899 -2.1377 26 1 3.8354 3.3936 -1.2800 27 1 1.1935 4.2388 0.0004 28 1 2.7166 5.1662 0.0002 29 1 3.4330 2.1152 4.7134 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261316394.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:39 Heat of formation + Delta-G solvation = -87.923108 kcal Electronic energy + Delta-G solvation = -14654.409771 eV Core-core repulsion = 12156.043935 eV Total energy + Delta-G solvation = -2498.365836 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.25697 -39.41761 -36.41787 -36.02635 -34.15060 -31.57095 -29.97702 -26.11803 -25.17132 -23.73275 -22.80186 -19.01765 -18.77885 -17.91288 -17.55131 -17.00685 -16.41833 -15.34955 -15.12593 -14.92217 -14.82146 -14.65749 -13.78574 -13.48822 -13.37362 -13.21928 -12.96461 -12.75418 -12.34226 -12.19144 -12.05588 -11.40297 -11.13225 -10.96561 -10.53284 -10.42907 -10.27663 -8.07724 -6.19421 0.96122 1.42416 1.45892 1.55595 1.94527 2.29965 2.49862 3.22427 3.52623 4.01663 4.17520 4.18531 4.29127 4.33323 4.37455 4.60543 4.74118 4.88745 4.94152 4.97372 5.02259 5.16238 5.41285 5.52801 5.80310 6.06915 6.45693 6.74423 6.86638 7.46256 7.51785 8.98095 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.040799 B = 0.011706 C = 0.009998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.120584 B = 2391.321973 C = 2800.027460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.084 3.916 3 N -0.578 5.578 4 C 0.523 3.477 5 O -0.555 6.555 6 C -0.132 4.132 7 C -0.102 4.102 8 C 0.028 3.972 9 H 0.052 0.948 10 C -0.551 4.551 11 H 0.070 0.930 12 C 0.028 3.972 13 N -0.872 5.872 14 Si 0.952 3.048 15 H -0.259 1.259 16 H -0.294 1.294 17 H -0.277 1.277 18 C 0.499 3.501 19 O -0.485 6.485 20 H 0.092 0.908 21 H 0.038 0.962 22 H 0.055 0.945 23 H 0.093 0.907 24 H 0.073 0.927 25 H 0.131 0.869 26 H 0.122 0.878 27 H 0.060 0.940 28 H 0.102 0.898 29 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.631 1.171 -7.844 8.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.038 4.038 3 N -0.323 5.323 4 C 0.315 3.685 5 O -0.433 6.433 6 C -0.171 4.171 7 C -0.139 4.139 8 C 0.007 3.993 9 H 0.069 0.931 10 C -0.589 4.589 11 H 0.088 0.912 12 C -0.177 4.177 13 N -0.506 5.506 14 Si 0.778 3.222 15 H -0.183 1.183 16 H -0.221 1.221 17 H -0.203 1.203 18 C 0.290 3.710 19 O -0.353 6.353 20 H 0.111 0.889 21 H 0.057 0.943 22 H 0.075 0.925 23 H 0.112 0.888 24 H 0.091 0.909 25 H 0.149 0.851 26 H 0.139 0.861 27 H 0.079 0.921 28 H 0.121 0.879 29 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.770 0.421 -7.632 7.846 hybrid contribution -0.225 -0.170 1.217 1.249 sum -1.995 0.251 -6.415 6.723 Atomic orbital electron populations 1.21907 0.94179 1.03482 1.01087 1.21618 0.96222 0.82748 1.03196 1.47395 1.60393 1.15865 1.08659 1.21587 0.74648 0.90546 0.81703 1.90618 1.51142 1.67601 1.33925 1.22017 1.04382 0.88829 1.01904 1.21682 1.01139 1.00318 0.90805 1.19066 0.97558 0.86687 0.96000 0.93055 1.21109 1.34899 1.12708 0.90158 0.91192 1.25732 0.94986 0.94780 1.02203 1.70201 1.36153 1.20615 1.23679 0.85604 0.78260 0.78552 0.79757 1.18299 1.22118 1.20316 1.23052 0.75778 0.90992 0.81197 1.90648 1.45146 1.65812 1.33668 0.88945 0.94316 0.92544 0.88830 0.90874 0.85095 0.86054 0.92150 0.87936 0.93682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.84 10.23 71.98 0.74 -4.10 15 2 C 0.08 3.07 5.67 86.38 0.49 3.56 15 3 N -0.58 -23.42 2.53 -757.74 -1.92 -25.34 15 4 C 0.52 18.76 7.48 87.72 0.66 19.41 15 5 O -0.55 -21.30 16.44 -2.87 -0.05 -21.35 15 6 C -0.13 -3.70 6.07 29.89 0.18 -3.51 15 7 C -0.10 -3.37 5.31 30.76 0.16 -3.21 15 8 C 0.03 1.27 2.36 -12.24 -0.03 1.25 15 9 H 0.05 2.47 8.14 -2.39 -0.02 2.45 15 10 C -0.55 -28.56 8.47 25.60 0.22 -28.34 15 11 H 0.07 3.47 7.74 -2.91 -0.02 3.45 15 12 C 0.03 1.51 4.84 84.66 0.41 1.92 15 13 N -0.87 -51.02 10.61 21.45 0.23 -50.79 15 14 Si 0.95 43.36 29.54 68.60 2.03 45.38 15 15 H -0.26 -11.11 7.11 99.48 0.71 -10.40 15 16 H -0.29 -13.80 7.11 99.48 0.71 -13.10 15 17 H -0.28 -12.23 7.11 99.48 0.71 -11.53 15 18 C 0.50 23.96 7.07 87.72 0.62 24.58 15 19 O -0.48 -27.31 12.53 -2.86 -0.04 -27.34 15 20 H 0.09 2.41 8.14 -2.39 -0.02 2.39 15 21 H 0.04 1.42 8.14 -2.39 -0.02 1.40 15 22 H 0.06 1.79 8.14 -2.39 -0.02 1.77 15 23 H 0.09 3.15 7.29 -2.39 -0.02 3.13 15 24 H 0.07 2.87 7.29 -2.38 -0.02 2.86 15 25 H 0.13 2.86 8.14 -2.39 -0.02 2.84 15 26 H 0.12 2.95 8.14 -2.39 -0.02 2.93 15 27 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 28 H 0.10 2.92 8.14 -2.38 -0.02 2.90 15 29 H 0.25 14.44 8.31 -92.71 -0.77 13.67 15 Total: -1.00 -65.95 246.24 4.84 -61.12 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 1.14 Total: 6.77 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 3.44 Total: 11.55 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -1.69 Total: -76.13 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: -0.08 Total: -48.69 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -65.95 4.84 -61.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261316394.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.806 kcal (2) G-P(sol) polarization free energy of solvation -65.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds