Wall clock time and date at job start Mon Mar 30 2020 03:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35758 * 116.99833 * 2 1 4 4 C 1.35946 * 126.19470 * 179.65207 * 3 2 1 5 5 C 1.39812 * 107.83813 * 180.15550 * 4 3 2 6 6 C 1.50706 * 125.86263 * 179.83276 * 5 4 3 7 7 N 1.46497 * 109.47164 * 94.71394 * 6 5 4 8 8 C 1.36944 * 119.99665 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00106 * 0.02562 * 8 7 6 10 10 C 1.38813 * 119.99679 * 179.97438 * 8 7 6 11 11 N 1.31616 * 119.99683 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99965 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47185 * 89.99660 * 12 10 8 14 14 H 1.48498 * 109.46816 * 209.99370 * 12 10 8 15 15 H 1.48495 * 109.47090 * 329.99426 * 12 10 8 16 16 N 1.30834 * 108.28531 * 359.56739 * 5 4 3 17 17 N 1.35138 * 126.19364 * 359.33309 * 3 2 1 18 18 C 1.46499 * 126.03915 * 0.02562 * 17 3 2 19 19 H 1.08994 * 109.47324 * 171.92211 * 1 2 3 20 20 H 1.09001 * 109.46658 * 291.92100 * 1 2 3 21 21 H 1.08999 * 109.47271 * 51.91827 * 1 2 3 22 22 H 1.07999 * 126.07988 * 0.02562 * 4 3 2 23 23 H 1.09001 * 109.46717 * 334.71806 * 6 5 4 24 24 H 1.09002 * 109.46908 * 214.72193 * 6 5 4 25 25 H 0.96999 * 120.00294 * 0.02562 * 7 6 5 26 26 H 0.97004 * 120.00051 * 180.02562 * 11 10 8 27 27 H 1.09004 * 109.46739 * 277.02610 * 18 17 3 28 28 H 1.09002 * 109.46677 * 37.02100 * 18 17 3 29 29 H 1.08997 * 109.47120 * 157.02237 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 3.3873 1.4269 0.0067 5 6 3.5974 2.8092 0.0076 6 6 4.9375 3.4985 0.0178 7 7 5.3306 3.8221 -1.3558 8 6 6.5202 4.4566 -1.5961 9 1 7.1686 4.7181 -0.7730 10 6 6.8929 4.7628 -2.8977 11 7 8.0365 5.3722 -3.1286 12 14 5.7716 4.3099 -4.3214 13 1 4.8352 5.4307 -4.5899 14 1 6.5903 4.0482 -5.5323 15 1 4.9981 3.0909 -3.9739 16 7 2.4310 3.4016 -0.0076 17 7 1.4359 2.4157 -0.0127 18 6 -0.0100 2.6507 -0.0284 19 1 -0.3634 -1.0174 -0.1444 20 1 -0.3633 0.3837 0.9534 21 1 -0.3634 0.6338 -0.8089 22 1 4.1546 0.6669 0.0125 23 1 5.6821 2.8386 0.4629 24 1 4.8696 4.4161 0.6022 25 1 4.7480 3.5877 -2.0951 26 1 8.2968 5.5865 -4.0382 27 1 -0.3786 2.5793 -1.0518 28 1 -0.5064 1.9025 0.5896 29 1 -0.2208 3.6450 0.3652 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300963049.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:24 Heat of formation + Delta-G solvation = 78.285581 kcal Electronic energy + Delta-G solvation = -13694.699554 eV Core-core repulsion = 11235.833819 eV Total energy + Delta-G solvation = -2458.865735 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.40550 -38.34780 -34.98724 -33.20067 -31.26701 -29.81589 -28.04477 -26.80359 -25.04780 -22.09994 -21.32646 -19.80188 -17.91573 -17.05661 -16.70430 -15.58151 -15.20653 -14.69304 -14.33517 -14.03528 -13.71721 -13.24787 -13.01798 -12.72996 -12.48311 -11.90657 -11.47028 -11.36557 -10.99896 -10.81222 -10.25230 -10.09492 -9.53042 -8.85865 -8.79566 -8.14470 -7.16690 -5.70057 -3.05269 2.01463 2.39984 2.94420 3.01403 3.45789 3.51046 3.52048 4.28962 4.57479 4.67449 4.71158 4.89546 4.99094 5.11913 5.28384 5.54880 5.56131 5.70615 5.83391 6.09962 6.23433 6.52347 6.69374 6.90482 7.43986 7.94979 8.05135 8.48785 9.27275 9.99849 10.20281 11.48162 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.048003 B = 0.007302 C = 0.007043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.160121 B = 3833.741293 C = 3974.352775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.293 6.293 3 C 0.260 3.740 4 C -0.273 4.273 5 C 0.105 3.895 6 C 0.233 3.767 7 N -0.749 5.749 8 C -0.241 4.241 9 H 0.094 0.906 10 C 0.006 3.994 11 N -0.934 5.934 12 Si 0.883 3.117 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.277 1.277 16 N -0.278 5.278 17 N -0.411 5.411 18 C 0.083 3.917 19 H 0.104 0.896 20 H 0.060 0.940 21 H 0.062 0.938 22 H 0.156 0.844 23 H 0.052 0.948 24 H 0.046 0.954 25 H 0.363 0.637 26 H 0.259 0.741 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.314 -10.230 7.046 22.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.200 6.200 3 C 0.093 3.907 4 C -0.303 4.303 5 C -0.062 4.062 6 C 0.104 3.896 7 N -0.395 5.395 8 C -0.371 4.371 9 H 0.112 0.888 10 C -0.189 4.189 11 N -0.582 5.582 12 Si 0.713 3.287 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.203 1.203 16 N -0.103 5.103 17 N -0.205 5.205 18 C -0.058 4.058 19 H 0.123 0.877 20 H 0.078 0.922 21 H 0.080 0.920 22 H 0.173 0.827 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.196 0.804 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.797 -9.318 7.081 22.142 hybrid contribution -0.799 -1.028 -1.183 1.759 sum -19.596 -10.346 5.898 22.931 Atomic orbital electron populations 1.23568 0.78688 1.04798 1.01244 1.86268 1.21084 1.22439 1.90200 1.19619 0.91457 0.78780 1.00851 1.20474 0.91555 0.96861 1.21403 1.22605 0.95116 0.91957 0.96570 1.19072 0.85381 0.96339 0.88764 1.42618 1.22952 1.72485 1.01488 1.19060 0.94579 1.29378 0.94092 0.88829 1.24618 0.96901 1.00559 0.96861 1.69699 1.22015 1.46586 1.19930 0.86555 0.80521 0.78410 0.83202 1.21111 1.21701 1.20315 1.77557 0.95475 1.10429 1.26865 1.48893 1.06718 1.03218 1.61684 1.22334 0.75692 1.04918 1.02862 0.87738 0.92168 0.91989 0.82680 0.93012 0.93627 0.80387 0.93079 0.91038 0.89303 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.42 101.05 0.95 1.04 15 2 O -0.29 -3.79 10.57 -18.98 -0.20 -3.99 15 3 C 0.26 4.08 7.79 -16.92 -0.13 3.95 15 4 C -0.27 -4.81 10.76 -39.82 -0.43 -5.23 15 5 C 0.10 2.04 6.58 -82.43 -0.54 1.50 15 6 C 0.23 4.94 6.82 -5.19 -0.04 4.91 15 7 N -0.75 -19.15 5.40 -61.08 -0.33 -19.48 15 8 C -0.24 -7.08 10.47 -15.06 -0.16 -7.23 15 9 H 0.09 2.86 8.06 -52.49 -0.42 2.44 15 10 C 0.01 0.19 5.50 -17.43 -0.10 0.10 15 11 N -0.93 -29.98 13.97 55.49 0.78 -29.20 15 12 Si 0.88 23.19 27.74 -169.99 -4.71 18.47 15 13 H -0.28 -7.45 7.11 56.52 0.40 -7.04 15 14 H -0.29 -7.61 7.11 56.52 0.40 -7.21 15 15 H -0.28 -7.03 6.52 56.52 0.37 -6.66 15 16 N -0.28 -5.30 12.57 33.66 0.42 -4.88 15 17 N -0.41 -6.27 4.02 -68.28 -0.27 -6.55 15 18 C 0.08 0.79 9.59 59.85 0.57 1.36 15 19 H 0.10 0.53 8.14 -51.93 -0.42 0.11 15 20 H 0.06 0.36 6.45 -51.93 -0.34 0.02 15 21 H 0.06 0.42 5.92 -51.93 -0.31 0.11 15 22 H 0.16 2.51 8.06 -52.49 -0.42 2.09 15 23 H 0.05 1.04 8.14 -51.93 -0.42 0.61 15 24 H 0.05 0.97 8.14 -51.93 -0.42 0.54 15 25 H 0.36 9.38 5.52 -40.82 -0.23 9.15 15 26 H 0.26 7.91 8.31 -40.82 -0.34 7.57 15 27 H 0.07 0.58 7.58 -51.93 -0.39 0.19 15 28 H 0.09 0.57 4.69 -51.93 -0.24 0.32 15 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 15 LS Contribution 249.07 15.07 3.75 3.75 Total: -1.00 -35.18 249.07 -3.64 -38.82 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -3.21 Total: 2.67 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 0.13 Total: 0.39 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.59 Total: -60.11 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: -0.20 Total: -3.99 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -4.71 Total: 18.47 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -35.18 -3.64 -38.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300963049.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.106 kcal (2) G-P(sol) polarization free energy of solvation -35.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds