Wall clock time and date at job start Mon Mar 30 2020 02:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86797 * 120.00179 * 2 1 4 4 H 1.48497 * 109.46969 * 240.00125 * 3 2 1 5 5 H 1.48505 * 109.46845 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47329 * 120.00091 * 3 2 1 7 7 C 1.38946 * 119.99551 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99550 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00363 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00287 * 180.02562 * 9 7 2 11 11 O 1.21287 * 119.99800 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00345 * 180.02562 * 10 9 7 13 13 C 1.53005 * 109.33860 * 59.48297 * 12 10 9 14 14 C 1.53232 * 109.37855 * 183.47731 * 13 12 10 15 15 C 1.51270 * 108.69741 * 305.66359 * 14 13 12 16 16 O 1.20752 * 120.85299 * 231.23272 * 15 14 13 17 17 C 1.51271 * 118.29945 * 51.25119 * 15 14 13 18 18 C 1.52953 * 109.41572 * 179.97438 * 12 10 9 19 19 H 0.97001 * 119.99856 * 359.97438 * 1 2 3 20 20 H 0.97004 * 119.99876 * 359.97438 * 9 7 2 21 21 H 1.09005 * 109.40932 * 299.85919 * 12 10 9 22 22 H 1.09003 * 109.33509 * 63.60492 * 13 12 10 23 23 H 1.08998 * 109.65336 * 303.54937 * 13 12 10 24 24 H 1.09002 * 109.62686 * 185.85253 * 14 13 12 25 25 H 1.09001 * 109.62522 * 65.47590 * 14 13 12 26 26 H 1.08996 * 109.62720 * 68.36253 * 17 15 14 27 27 H 1.08998 * 109.62860 * 188.74644 * 17 15 14 28 28 H 1.08997 * 109.48509 * 56.37981 * 18 12 10 29 29 H 1.09004 * 109.49182 * 296.34892 * 18 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1020 1.6964 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2100 -3.5579 0.0021 12 6 1.2436 -4.8630 0.0010 13 6 0.3568 -4.9355 -1.2437 14 6 -0.4744 -6.2221 -1.2016 15 6 0.4610 -7.3983 -1.0285 16 8 0.4000 -8.3518 -1.7669 17 6 1.4744 -7.3496 0.0935 18 6 2.2387 -6.0246 0.0018 19 1 -0.4850 0.8401 0.0004 20 1 0.3533 -2.3906 0.0005 21 1 0.6182 -4.9206 0.8919 22 1 0.9849 -4.9375 -2.1347 23 1 -0.3092 -4.0731 -1.2701 24 1 -1.0297 -6.3299 -2.1333 25 1 -1.1701 -6.1812 -0.3635 26 1 0.9613 -7.4109 1.0532 27 1 2.1692 -8.1837 -0.0042 28 1 2.9066 -5.9306 0.8579 29 1 2.8224 -6.0041 -0.9186 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306236846.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:57 Heat of formation + Delta-G solvation = -99.887631 kcal Electronic energy + Delta-G solvation = -13878.306623 eV Core-core repulsion = 11379.421967 eV Total energy + Delta-G solvation = -2498.884656 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.90297 -38.36185 -35.63118 -33.99000 -31.48834 -30.87437 -28.95190 -24.98867 -22.97006 -22.11346 -19.37840 -18.79259 -17.93738 -16.20656 -15.59578 -15.30341 -14.71027 -14.61945 -14.17626 -13.81499 -13.40446 -13.00430 -12.57619 -12.27763 -11.86282 -11.61462 -11.26079 -11.09740 -11.09244 -10.76678 -10.46834 -10.42157 -10.21211 -9.54556 -9.26900 -8.38894 -8.01267 -6.45941 -3.86831 2.01157 3.17218 3.23669 3.27965 3.83266 4.12772 4.19546 4.75237 4.84107 4.94169 5.11480 5.25656 5.35467 5.39881 5.54813 5.65111 5.74767 5.86637 5.98691 6.16410 6.18432 6.40243 6.52495 6.59422 7.51316 7.54030 8.01361 8.55906 9.13241 9.49900 10.00864 10.71466 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.064145 B = 0.007103 C = 0.006605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.405526 B = 3940.935244 C = 4238.385839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.303 4.303 8 H 0.102 0.898 9 N -0.559 5.559 10 C 0.443 3.557 11 O -0.595 6.595 12 C -0.104 4.104 13 C -0.105 4.105 14 C -0.168 4.168 15 C 0.364 3.636 16 O -0.469 6.469 17 C -0.170 4.170 18 C -0.088 4.088 19 H 0.273 0.727 20 H 0.393 0.607 21 H 0.087 0.913 22 H 0.070 0.930 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.099 0.901 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.796 -8.581 0.640 9.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.432 4.432 8 H 0.120 0.880 9 N -0.194 5.194 10 C 0.229 3.771 11 O -0.481 6.481 12 C -0.126 4.126 13 C -0.143 4.143 14 C -0.206 4.206 15 C 0.241 3.759 16 O -0.343 6.343 17 C -0.208 4.208 18 C -0.126 4.126 19 H 0.082 0.918 20 H 0.227 0.773 21 H 0.105 0.895 22 H 0.089 0.911 23 H 0.102 0.898 24 H 0.106 0.894 25 H 0.117 0.883 26 H 0.115 0.885 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.157 -8.895 0.246 9.156 hybrid contribution -0.272 1.003 0.103 1.044 sum -2.429 -7.891 0.349 8.264 Atomic orbital electron populations 1.69599 1.05931 1.28355 1.50262 1.25261 0.95628 0.99738 0.97150 0.85922 0.78796 0.80445 0.79103 1.19884 1.20946 1.19878 1.19679 0.93393 0.82336 1.47837 0.87970 1.41898 1.09230 1.04625 1.63641 1.19772 0.88110 0.84754 0.84439 1.90517 1.13975 1.87285 1.56316 1.21238 0.97338 0.94875 0.99105 1.21553 0.98075 0.96371 0.98337 1.22328 0.98758 0.94953 1.04557 1.25005 0.82504 0.85683 0.82708 1.90374 1.66737 1.34629 1.42595 1.22375 0.98766 1.00561 0.99093 1.21237 0.97029 0.90018 1.04305 0.91752 0.77346 0.89464 0.91124 0.89833 0.89430 0.88252 0.88479 0.89508 0.89978 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.88 13.05 55.50 0.72 -23.16 15 2 C 0.02 0.63 5.50 -17.47 -0.10 0.54 15 3 Si 0.93 20.68 29.55 -169.99 -5.02 15.65 15 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 7 C -0.30 -8.26 9.68 -14.94 -0.14 -8.40 15 8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 15 9 N -0.56 -13.65 5.15 -10.97 -0.06 -13.70 15 10 C 0.44 10.02 7.11 -10.98 -0.08 9.94 15 11 O -0.60 -15.70 15.52 5.55 0.09 -15.62 15 12 C -0.10 -1.68 2.42 -91.79 -0.22 -1.91 15 13 C -0.11 -1.51 5.15 -26.61 -0.14 -1.65 15 14 C -0.17 -2.00 6.16 -27.48 -0.17 -2.17 15 15 C 0.36 4.90 6.72 -28.48 -0.19 4.71 15 16 O -0.47 -7.73 17.89 6.01 0.11 -7.62 15 17 C -0.17 -2.03 6.17 -27.48 -0.17 -2.20 15 18 C -0.09 -1.31 4.54 -26.63 -0.12 -1.43 15 19 H 0.27 6.87 8.31 -40.82 -0.34 6.53 15 20 H 0.39 9.10 7.24 -40.82 -0.30 8.80 15 21 H 0.09 1.24 8.14 -51.93 -0.42 0.82 15 22 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 23 H 0.08 1.22 7.44 -51.93 -0.39 0.83 15 24 H 0.09 1.00 8.14 -51.93 -0.42 0.58 15 25 H 0.10 0.97 8.14 -51.93 -0.42 0.55 15 26 H 0.10 0.94 8.14 -51.93 -0.42 0.52 15 27 H 0.09 0.99 8.14 -51.93 -0.42 0.57 15 28 H 0.08 1.27 8.00 -51.93 -0.42 0.85 15 29 H 0.07 1.16 8.14 -51.93 -0.42 0.73 15 LS Contribution 251.06 15.07 3.78 3.78 Total: -1.00 -31.03 251.06 -5.27 -36.31 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -3.57 Total: 6.93 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -1.33 Total: -2.57 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.67 Total: -36.86 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: 0.19 Total: -23.24 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.03 -5.27 -36.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306236846.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.581 kcal (2) G-P(sol) polarization free energy of solvation -31.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds