Wall clock time and date at job start Mon Mar 30 2020 02:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86797 * 120.00179 * 2 1 4 4 H 1.48497 * 109.46969 * 240.00125 * 3 2 1 5 5 H 1.48505 * 109.46845 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47329 * 120.00091 * 3 2 1 7 7 C 1.38946 * 119.99551 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99550 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00363 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00287 * 180.02562 * 9 7 2 11 11 O 1.21287 * 119.99800 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00345 * 180.02562 * 10 9 7 13 13 C 1.53005 * 109.33860 * 59.48297 * 12 10 9 14 14 C 1.53232 * 109.37855 * 183.47731 * 13 12 10 15 15 C 1.51270 * 108.69741 * 305.66359 * 14 13 12 16 16 O 1.20752 * 120.85299 * 231.23272 * 15 14 13 17 17 C 1.51271 * 118.29945 * 51.25119 * 15 14 13 18 18 C 1.52953 * 109.41572 * 179.97438 * 12 10 9 19 19 H 0.97001 * 119.99856 * 359.97438 * 1 2 3 20 20 H 0.97004 * 119.99876 * 359.97438 * 9 7 2 21 21 H 1.09005 * 109.40932 * 299.85919 * 12 10 9 22 22 H 1.09003 * 109.33509 * 63.60492 * 13 12 10 23 23 H 1.08998 * 109.65336 * 303.54937 * 13 12 10 24 24 H 1.09002 * 109.62686 * 185.85253 * 14 13 12 25 25 H 1.09001 * 109.62522 * 65.47590 * 14 13 12 26 26 H 1.08996 * 109.62720 * 68.36253 * 17 15 14 27 27 H 1.08998 * 109.62860 * 188.74644 * 17 15 14 28 28 H 1.08997 * 109.48509 * 56.37981 * 18 12 10 29 29 H 1.09004 * 109.49182 * 296.34892 * 18 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1020 1.6964 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2100 -3.5579 0.0021 12 6 1.2436 -4.8630 0.0010 13 6 0.3568 -4.9355 -1.2437 14 6 -0.4744 -6.2221 -1.2016 15 6 0.4610 -7.3983 -1.0285 16 8 0.4000 -8.3518 -1.7669 17 6 1.4744 -7.3496 0.0935 18 6 2.2387 -6.0246 0.0018 19 1 -0.4850 0.8401 0.0004 20 1 0.3533 -2.3906 0.0005 21 1 0.6182 -4.9206 0.8919 22 1 0.9849 -4.9375 -2.1347 23 1 -0.3092 -4.0731 -1.2701 24 1 -1.0297 -6.3299 -2.1333 25 1 -1.1701 -6.1812 -0.3635 26 1 0.9613 -7.4109 1.0532 27 1 2.1692 -8.1837 -0.0042 28 1 2.9066 -5.9306 0.8579 29 1 2.8224 -6.0041 -0.9186 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306236846.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:57 Heat of formation + Delta-G solvation = -120.966123 kcal Electronic energy + Delta-G solvation = -13879.220655 eV Core-core repulsion = 11379.421967 eV Total energy + Delta-G solvation = -2499.798688 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.16838 -39.97267 -37.01299 -35.95023 -33.31556 -32.10482 -30.25597 -26.89225 -24.07718 -23.54579 -20.89453 -20.14130 -19.80047 -17.81963 -16.99942 -16.45772 -16.36506 -15.86760 -15.85751 -15.35285 -14.76860 -14.56639 -14.06055 -13.54312 -13.32332 -13.08410 -12.87205 -12.48446 -12.44657 -12.31199 -12.12928 -11.89377 -11.60683 -11.49699 -10.36848 -10.25289 -10.00317 -8.46143 -5.94548 0.95571 1.39998 1.42817 1.53002 2.05257 2.30632 3.10797 3.21067 3.26335 3.70099 3.82710 4.03303 4.12498 4.34486 4.39326 4.49601 4.54277 4.77912 4.84693 5.01703 5.06350 5.09898 5.32209 5.37563 5.42591 6.01043 6.50058 6.60148 7.13087 7.57624 8.12906 8.70630 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.064145 B = 0.007103 C = 0.006605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.405526 B = 3940.935244 C = 4238.385839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.009 4.009 3 Si 0.989 3.011 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.338 4.338 8 H 0.077 0.923 9 N -0.567 5.567 10 C 0.440 3.560 11 O -0.638 6.638 12 C -0.094 4.094 13 C -0.100 4.100 14 C -0.158 4.158 15 C 0.367 3.633 16 O -0.502 6.502 17 C -0.159 4.159 18 C -0.084 4.084 19 H 0.278 0.722 20 H 0.398 0.602 21 H 0.120 0.880 22 H 0.053 0.947 23 H 0.083 0.917 24 H 0.095 0.905 25 H 0.133 0.867 26 H 0.131 0.869 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.981 -8.940 1.255 9.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.209 4.209 3 Si 0.813 3.187 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.467 4.467 8 H 0.095 0.905 9 N -0.203 5.203 10 C 0.228 3.772 11 O -0.526 6.526 12 C -0.115 4.115 13 C -0.138 4.138 14 C -0.195 4.195 15 C 0.246 3.754 16 O -0.379 6.379 17 C -0.196 4.196 18 C -0.122 4.122 19 H 0.088 0.912 20 H 0.233 0.767 21 H 0.137 0.863 22 H 0.072 0.928 23 H 0.101 0.899 24 H 0.113 0.887 25 H 0.151 0.849 26 H 0.149 0.851 27 H 0.112 0.888 28 H 0.094 0.906 29 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.368 -9.259 0.866 9.890 hybrid contribution 0.126 1.096 -0.087 1.107 sum -3.242 -8.162 0.778 8.817 Atomic orbital electron populations 1.69651 1.06694 1.29386 1.49994 1.25977 0.96514 1.02232 0.96190 0.85042 0.77838 0.76916 0.78885 1.19912 1.19473 1.19722 1.19639 0.92720 0.84229 1.50158 0.90466 1.41950 1.09416 1.04612 1.64322 1.20934 0.87982 0.86323 0.81991 1.90486 1.16278 1.88245 1.57610 1.21253 0.97539 0.91263 1.01465 1.21460 0.97769 0.98025 0.96523 1.22293 0.98425 0.92321 1.06497 1.25333 0.82483 0.85424 0.82191 1.90380 1.67751 1.36084 1.43659 1.22324 0.98462 0.98604 1.00229 1.21155 0.96824 0.91223 1.02972 0.91239 0.76702 0.86258 0.92844 0.89876 0.88682 0.84936 0.85104 0.88778 0.90630 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.00 13.05 21.66 0.28 -47.72 15 2 C -0.01 -0.46 5.50 84.92 0.47 0.01 15 3 Si 0.99 42.10 29.55 68.60 2.03 44.12 15 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 15 5 H -0.27 -10.82 7.11 99.48 0.71 -10.12 15 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 7 C -0.34 -18.77 9.68 84.04 0.81 -17.95 15 8 H 0.08 4.59 7.16 -2.91 -0.02 4.57 15 9 N -0.57 -27.95 5.15 -306.99 -1.58 -29.53 15 10 C 0.44 20.00 7.11 87.66 0.62 20.62 15 11 O -0.64 -34.54 15.52 -3.05 -0.05 -34.59 15 12 C -0.09 -2.90 2.42 -11.55 -0.03 -2.92 15 13 C -0.10 -2.70 5.15 30.67 0.16 -2.54 15 14 C -0.16 -3.25 6.16 30.11 0.19 -3.06 15 15 C 0.37 8.89 6.72 29.46 0.20 9.09 15 16 O -0.50 -15.63 17.89 -1.43 -0.03 -15.65 15 17 C -0.16 -3.32 6.17 30.11 0.19 -3.13 15 18 C -0.08 -2.38 4.54 30.66 0.14 -2.24 15 19 H 0.28 13.69 8.31 -92.71 -0.77 12.92 15 20 H 0.40 18.38 7.24 -92.71 -0.67 17.70 15 21 H 0.12 2.98 8.14 -2.38 -0.02 2.96 15 22 H 0.05 1.62 8.14 -2.39 -0.02 1.60 15 23 H 0.08 2.29 7.44 -2.39 -0.02 2.27 15 24 H 0.09 1.89 8.14 -2.39 -0.02 1.87 15 25 H 0.13 1.93 8.14 -2.39 -0.02 1.91 15 26 H 0.13 1.93 8.14 -2.39 -0.02 1.91 15 27 H 0.09 1.89 8.14 -2.39 -0.02 1.88 15 28 H 0.08 2.26 8.00 -2.39 -0.02 2.24 15 29 H 0.05 1.61 8.14 -2.38 -0.02 1.59 15 Total: -1.00 -67.72 251.06 3.88 -63.84 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.49 Total: 21.66 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 2.74 Total: -2.13 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -1.30 Total: -77.25 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -0.07 Total: -50.24 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -67.72 3.88 -63.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306236846.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.127 kcal (2) G-P(sol) polarization free energy of solvation -67.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds