Wall clock time and date at job start Mon Mar 30 2020 03:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29944 * 126.28722 * 2 1 4 4 O 1.21301 * 110.25191 * 180.02562 * 3 2 1 5 5 C 1.33647 * 109.80866 * 359.97438 * 4 3 2 6 6 C 1.50697 * 126.54755 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47239 * 120.02463 * 6 5 4 8 8 C 1.52999 * 109.47283 * 240.02026 * 6 5 4 9 9 N 1.46504 * 109.47650 * 0.02562 * 6 5 4 10 10 C 1.36939 * 120.00094 * 180.02562 * 9 6 5 11 11 H 1.07995 * 119.99958 * 359.97438 * 10 9 6 12 12 C 1.38811 * 119.99349 * 179.97438 * 10 9 6 13 13 N 1.31625 * 119.99531 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 120.00406 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.47093 * 90.00334 * 14 12 10 16 16 H 1.48497 * 109.47042 * 209.99954 * 14 12 10 17 17 H 1.48495 * 109.46891 * 329.99926 * 14 12 10 18 18 N 1.31130 * 106.89825 * 0.22886 * 5 4 3 19 19 H 1.08995 * 109.47083 * 89.97409 * 1 2 3 20 20 H 1.08998 * 109.46792 * 209.97814 * 1 2 3 21 21 H 1.09000 * 109.47104 * 329.96942 * 1 2 3 22 22 H 1.09001 * 109.46801 * 179.97438 * 7 6 5 23 23 H 1.09001 * 109.46998 * 299.99373 * 7 6 5 24 24 H 1.09000 * 109.47050 * 59.99664 * 7 6 5 25 25 H 1.09000 * 109.47160 * 300.00430 * 8 6 5 26 26 H 1.09002 * 109.46719 * 60.00151 * 8 6 5 27 27 H 1.08993 * 109.47839 * 179.97438 * 8 6 5 28 28 H 0.97006 * 119.99455 * 359.97438 * 9 6 5 29 29 H 0.96998 * 119.99497 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7124 -0.0005 5 6 3.5298 -0.6212 -0.0003 6 6 4.7969 -1.4370 -0.0014 7 6 4.8362 -2.3197 1.2478 8 6 4.8344 -2.3194 -1.2507 9 7 5.9553 -0.5401 -0.0020 10 6 7.2227 -1.0586 -0.0035 11 1 7.3684 -2.1287 -0.0038 12 6 8.3202 -0.2086 -0.0046 13 7 9.5385 -0.7070 -0.0066 14 14 8.0682 1.6423 -0.0048 15 1 8.0027 2.1331 1.3952 16 1 9.2022 2.2962 -0.7060 17 1 6.7995 1.9690 -0.7039 18 7 2.3030 -1.0841 -0.0047 19 1 -0.3633 0.0005 -1.0276 20 1 -0.3633 -0.8902 0.5135 21 1 -0.3633 0.8897 0.5143 22 1 5.7525 -2.9101 1.2467 23 1 4.8096 -1.6912 2.1379 24 1 3.9744 -2.9871 1.2483 25 1 3.9726 -2.9867 -1.2502 26 1 4.8064 -1.6905 -2.1406 27 1 5.7510 -2.9091 -1.2517 28 1 5.8244 0.4211 -0.0021 29 1 10.3053 -0.1131 -0.0070 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306324784.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:45 Heat of formation + Delta-G solvation = 78.971605 kcal Electronic energy + Delta-G solvation = -14217.303861 eV Core-core repulsion = 11758.467874 eV Total energy + Delta-G solvation = -2458.835987 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.29822 -37.20513 -35.77030 -32.90912 -31.59808 -29.56509 -29.03647 -26.71177 -24.79551 -23.05582 -22.28499 -19.40997 -18.13870 -17.80778 -16.92574 -15.07766 -14.63388 -13.84371 -13.74661 -13.61509 -13.18092 -12.91853 -12.71889 -12.18970 -11.99499 -11.77568 -11.25130 -11.15030 -11.02560 -10.98943 -10.78801 -10.66240 -10.15841 -9.67144 -9.60013 -9.04697 -7.46667 -5.85543 -3.25571 1.41892 2.43971 3.09399 3.36918 3.42102 3.44984 3.79028 4.22010 4.53841 5.01385 5.16483 5.30752 5.37982 5.40664 5.55573 5.65170 5.76272 6.00028 6.16723 6.18756 6.33896 6.39888 6.42711 6.76847 6.82988 7.80510 8.30614 8.40643 9.05595 9.78132 9.94026 11.31162 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.043035 B = 0.009967 C = 0.008565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.482585 B = 2808.728821 C = 3268.154773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.160 3.840 3 N -0.396 5.396 4 O 0.074 5.926 5 C 0.211 3.789 6 C 0.295 3.705 7 C -0.147 4.147 8 C -0.148 4.148 9 N -0.745 5.745 10 C -0.248 4.248 11 H 0.099 0.901 12 C 0.015 3.985 13 N -0.927 5.927 14 Si 0.876 3.124 15 H -0.281 1.281 16 H -0.289 1.289 17 H -0.273 1.273 18 N -0.489 5.489 19 H 0.085 0.915 20 H 0.089 0.911 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.369 0.631 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.603 -0.706 0.027 14.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.113 4.113 3 N -0.107 5.107 4 O 0.019 5.981 5 C -0.010 4.010 6 C 0.202 3.798 7 C -0.207 4.207 8 C -0.208 4.208 9 N -0.390 5.390 10 C -0.377 4.377 11 H 0.116 0.884 12 C -0.181 4.181 13 N -0.573 5.573 14 Si 0.705 3.295 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.199 1.199 18 N -0.224 5.224 19 H 0.104 0.896 20 H 0.108 0.892 21 H 0.102 0.898 22 H 0.101 0.899 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.203 0.797 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.012 -0.327 0.019 15.016 hybrid contribution 0.129 1.440 -0.020 1.446 sum -14.884 1.113 0.000 14.926 Atomic orbital electron populations 1.20064 0.83261 1.04308 1.03957 1.25899 1.00426 0.83941 1.00985 1.74605 0.89608 1.24235 1.22299 1.85289 1.22000 1.25222 1.65593 1.29496 0.97327 0.81579 0.92551 1.18249 0.77353 0.87309 0.96874 1.22243 1.02612 0.99366 0.96514 1.22244 1.02612 0.99381 0.96527 1.42824 1.01638 1.03716 1.90842 1.18879 0.80161 0.94321 1.44369 0.88370 1.24602 0.94966 0.97325 1.01256 1.69686 0.97062 1.34083 1.56462 0.86677 0.77387 0.87241 0.78154 1.20782 1.21488 1.19912 1.71817 0.99405 1.29098 1.22044 0.89624 0.89220 0.89828 0.89869 0.92671 0.92588 0.92577 0.92712 0.89869 0.79729 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.60 10.51 36.01 0.38 -0.22 15 2 C 0.16 2.54 8.22 -156.37 -1.28 1.26 15 3 N -0.40 -7.18 12.16 30.90 0.38 -6.80 15 4 O 0.07 1.45 10.41 18.09 0.19 1.64 15 5 C 0.21 3.94 6.74 -13.06 -0.09 3.85 15 6 C 0.30 5.65 1.11 -132.97 -0.15 5.50 15 7 C -0.15 -2.57 8.42 37.16 0.31 -2.26 15 8 C -0.15 -2.59 8.42 37.16 0.31 -2.28 15 9 N -0.74 -17.04 4.94 -48.30 -0.24 -17.28 15 10 C -0.25 -6.52 9.15 -15.06 -0.14 -6.66 15 11 H 0.10 2.68 6.92 -52.49 -0.36 2.32 15 12 C 0.02 0.43 5.50 -17.43 -0.10 0.34 15 13 N -0.93 -27.87 13.97 55.49 0.78 -27.09 15 14 Si 0.88 21.65 27.74 -169.99 -4.71 16.93 15 15 H -0.28 -6.95 7.11 56.52 0.40 -6.54 15 16 H -0.29 -7.22 7.11 56.52 0.40 -6.82 15 17 H -0.27 -6.50 6.52 56.52 0.37 -6.13 15 18 N -0.49 -8.43 11.55 -9.87 -0.11 -8.55 15 19 H 0.09 0.75 8.14 -51.93 -0.42 0.33 15 20 H 0.09 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.08 0.75 8.14 -51.93 -0.42 0.32 15 22 H 0.08 1.50 7.27 -51.93 -0.38 1.12 15 23 H 0.05 0.98 8.14 -51.93 -0.42 0.55 15 24 H 0.06 0.86 8.14 -51.93 -0.42 0.43 15 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 26 H 0.05 0.98 8.14 -51.93 -0.42 0.55 15 27 H 0.08 1.51 7.27 -51.93 -0.38 1.13 15 28 H 0.37 8.60 4.84 -40.82 -0.20 8.40 15 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 15 LS Contribution 251.16 15.07 3.78 3.78 Total: -1.00 -30.02 251.16 -4.14 -34.15 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -3.44 Total: 3.68 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -0.75 Total: -0.47 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: 0.80 Total: -59.72 kcal Atomic # 8 Polarization: 1.45 SS G_CDS: 0.19 Total: 1.64 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.93 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.02 -4.14 -34.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306324784.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.126 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds