Wall clock time and date at job start Mon Mar 30 2020 03:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29944 * 126.28722 * 2 1 4 4 O 1.21301 * 110.25191 * 180.02562 * 3 2 1 5 5 C 1.33647 * 109.80866 * 359.97438 * 4 3 2 6 6 C 1.50697 * 126.54755 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47239 * 120.02463 * 6 5 4 8 8 C 1.52999 * 109.47283 * 240.02026 * 6 5 4 9 9 N 1.46504 * 109.47650 * 0.02562 * 6 5 4 10 10 C 1.36939 * 120.00094 * 180.02562 * 9 6 5 11 11 H 1.07995 * 119.99958 * 359.97438 * 10 9 6 12 12 C 1.38811 * 119.99349 * 179.97438 * 10 9 6 13 13 N 1.31625 * 119.99531 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 120.00406 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.47093 * 90.00334 * 14 12 10 16 16 H 1.48497 * 109.47042 * 209.99954 * 14 12 10 17 17 H 1.48495 * 109.46891 * 329.99926 * 14 12 10 18 18 N 1.31130 * 106.89825 * 0.22886 * 5 4 3 19 19 H 1.08995 * 109.47083 * 89.97409 * 1 2 3 20 20 H 1.08998 * 109.46792 * 209.97814 * 1 2 3 21 21 H 1.09000 * 109.47104 * 329.96942 * 1 2 3 22 22 H 1.09001 * 109.46801 * 179.97438 * 7 6 5 23 23 H 1.09001 * 109.46998 * 299.99373 * 7 6 5 24 24 H 1.09000 * 109.47050 * 59.99664 * 7 6 5 25 25 H 1.09000 * 109.47160 * 300.00430 * 8 6 5 26 26 H 1.09002 * 109.46719 * 60.00151 * 8 6 5 27 27 H 1.08993 * 109.47839 * 179.97438 * 8 6 5 28 28 H 0.97006 * 119.99455 * 359.97438 * 9 6 5 29 29 H 0.96998 * 119.99497 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7124 -0.0005 5 6 3.5298 -0.6212 -0.0003 6 6 4.7969 -1.4370 -0.0014 7 6 4.8362 -2.3197 1.2478 8 6 4.8344 -2.3194 -1.2507 9 7 5.9553 -0.5401 -0.0020 10 6 7.2227 -1.0586 -0.0035 11 1 7.3684 -2.1287 -0.0038 12 6 8.3202 -0.2086 -0.0046 13 7 9.5385 -0.7070 -0.0066 14 14 8.0682 1.6423 -0.0048 15 1 8.0027 2.1331 1.3952 16 1 9.2022 2.2962 -0.7060 17 1 6.7995 1.9690 -0.7039 18 7 2.3030 -1.0841 -0.0047 19 1 -0.3633 0.0005 -1.0276 20 1 -0.3633 -0.8902 0.5135 21 1 -0.3633 0.8897 0.5143 22 1 5.7525 -2.9101 1.2467 23 1 4.8096 -1.6912 2.1379 24 1 3.9744 -2.9871 1.2483 25 1 3.9726 -2.9867 -1.2502 26 1 4.8064 -1.6905 -2.1406 27 1 5.7510 -2.9091 -1.2517 28 1 5.8244 0.4211 -0.0021 29 1 10.3053 -0.1131 -0.0070 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306324784.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:45 Heat of formation + Delta-G solvation = 56.976015 kcal Electronic energy + Delta-G solvation = -14218.257661 eV Core-core repulsion = 11758.467874 eV Total energy + Delta-G solvation = -2459.789787 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -46.63741 -38.82460 -37.09006 -34.70156 -33.18108 -31.35292 -30.07479 -28.15065 -26.44431 -24.74156 -23.62044 -20.93368 -20.04692 -19.16668 -18.41883 -16.69214 -16.50762 -15.44290 -14.99863 -14.72441 -14.63428 -14.44653 -13.99255 -13.83579 -13.27286 -13.23043 -12.87955 -12.83561 -12.64635 -12.48219 -12.21256 -12.07383 -12.00721 -11.67287 -11.17852 -10.87251 -9.45597 -8.00597 -5.37784 0.03044 1.16291 1.39863 1.42133 1.47168 1.67813 2.47389 2.50466 3.04157 3.31420 3.46913 3.82426 4.09882 4.20464 4.49377 4.59749 4.62841 4.82262 4.84064 4.85826 4.94445 4.97270 5.09493 5.31971 5.38347 5.75456 6.20580 6.94548 7.10622 7.73576 7.91154 9.19015 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.043035 B = 0.009967 C = 0.008565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.482585 B = 2808.728821 C = 3268.154773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.170 3.830 3 N -0.416 5.416 4 O 0.047 5.953 5 C 0.204 3.796 6 C 0.288 3.712 7 C -0.140 4.140 8 C -0.140 4.140 9 N -0.751 5.751 10 C -0.219 4.219 11 H 0.083 0.917 12 C -0.047 4.047 13 N -0.974 5.974 14 Si 0.931 3.069 15 H -0.280 1.280 16 H -0.294 1.294 17 H -0.260 1.260 18 N -0.487 5.487 19 H 0.106 0.894 20 H 0.108 0.892 21 H 0.099 0.901 22 H 0.073 0.927 23 H 0.049 0.951 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.367 0.633 29 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.223 -0.666 0.000 17.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.103 4.103 3 N -0.131 5.131 4 O -0.003 6.003 5 C -0.017 4.017 6 C 0.196 3.804 7 C -0.199 4.199 8 C -0.200 4.200 9 N -0.396 5.396 10 C -0.349 4.349 11 H 0.101 0.899 12 C -0.240 4.240 13 N -0.623 5.623 14 Si 0.760 3.240 15 H -0.207 1.207 16 H -0.221 1.221 17 H -0.185 1.185 18 N -0.222 5.222 19 H 0.125 0.875 20 H 0.127 0.873 21 H 0.118 0.882 22 H 0.092 0.908 23 H 0.068 0.932 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.200 0.800 29 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.665 -0.296 -0.008 17.667 hybrid contribution 0.777 1.332 -0.010 1.542 sum -16.888 1.036 -0.018 16.920 Atomic orbital electron populations 1.20396 0.79398 1.06046 1.05798 1.26884 1.02379 0.82813 0.98261 1.74619 0.89353 1.25139 1.23999 1.85268 1.22999 1.25490 1.66508 1.29323 0.97553 0.81591 0.93243 1.18468 0.76492 0.87201 0.98208 1.22156 1.03319 0.99170 0.95305 1.22156 1.03322 0.99184 0.95312 1.42848 1.01697 1.04215 1.90830 1.18868 0.81433 0.93595 1.41012 0.89929 1.25225 0.94888 1.01157 1.02708 1.69820 0.97858 1.35268 1.59399 0.85764 0.77426 0.82757 0.78070 1.20673 1.22111 1.18538 1.71846 0.98883 1.29525 1.21902 0.87544 0.87334 0.88239 0.90844 0.93193 0.89936 0.89928 0.93296 0.90836 0.79976 0.93276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.97 10.51 71.24 0.75 -0.22 15 2 C 0.17 4.88 8.22 138.46 1.14 6.02 15 3 N -0.42 -14.25 12.16 -60.32 -0.73 -14.99 15 4 O 0.05 1.79 10.41 74.80 0.78 2.57 15 5 C 0.20 7.23 6.74 88.38 0.60 7.82 15 6 C 0.29 10.61 1.11 2.86 0.00 10.61 15 7 C -0.14 -4.66 8.42 71.98 0.61 -4.05 15 8 C -0.14 -4.68 8.42 71.98 0.61 -4.08 15 9 N -0.75 -33.83 4.94 -306.74 -1.51 -35.34 15 10 C -0.22 -11.53 9.15 84.03 0.77 -10.76 15 11 H 0.08 4.57 6.92 -2.91 -0.02 4.55 15 12 C -0.05 -2.68 5.50 84.86 0.47 -2.21 15 13 N -0.97 -59.79 13.97 21.65 0.30 -59.49 15 14 Si 0.93 44.99 27.74 68.60 1.90 46.89 15 15 H -0.28 -13.37 7.11 99.48 0.71 -12.67 15 16 H -0.29 -14.40 7.11 99.48 0.71 -13.69 15 17 H -0.26 -11.84 6.52 99.48 0.65 -11.19 15 18 N -0.49 -15.42 11.55 -303.19 -3.50 -18.92 15 19 H 0.11 1.40 8.14 -2.39 -0.02 1.38 15 20 H 0.11 1.44 8.14 -2.39 -0.02 1.42 15 21 H 0.10 1.38 8.14 -2.39 -0.02 1.36 15 22 H 0.07 2.59 7.27 -2.39 -0.02 2.57 15 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 15 24 H 0.08 2.30 8.14 -2.39 -0.02 2.28 15 25 H 0.08 2.31 8.14 -2.39 -0.02 2.29 15 26 H 0.05 1.67 8.14 -2.39 -0.02 1.65 15 27 H 0.07 2.60 7.27 -2.39 -0.02 2.58 15 28 H 0.37 16.77 4.84 -92.70 -0.45 16.33 15 29 H 0.26 15.27 8.31 -92.71 -0.77 14.50 15 Total: -1.00 -63.94 251.16 2.82 -61.12 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.65 Total: 15.03 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 4.93 Total: 3.13 kcal Atomic # 7 Polarization: -123.29 SS G_CDS: -5.45 Total: -128.74 kcal Atomic # 8 Polarization: 1.79 SS G_CDS: 0.78 Total: 2.57 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.90 Total: 46.89 kcal Total: -63.94 2.82 -61.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306324784.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.100 kcal (2) G-P(sol) polarization free energy of solvation -63.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds